FC931330

Overview
NameFC931330
Unique NameFC931330
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15157 contig Ccv1_Contig15157:240..947. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931330 vs. ExPASy Swiss-Prot
Match: PIP_MYCGE (Putative proline iminopeptidase OS=Mycoplasma genitalium GN=pip PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.757e-32
Identity = 69/155 (44.52%), Postives = 89/155 (57.42%), Query Frame = 2
Query:  227 GILKVSDIHTIYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIPR 691
            G L V D H +Y+   GNP G PV+++HGGPG GT     ++FD +   IIL DQRG GKS  +    +N T  L+ D E LRQ L I  W +FGGSWGS LAL Y++ HP  V  + LR +FL R+K+      G     YP   + F D IP+
Sbjct:    9 GYLNVGDNHQLYYWTQGNPNGKPVLYIHGGPGSGTDEGCLKYFDLETTWIILLDQRGCGKSKTNDIFYENNTDKLVSDFEILRQKLNIKNWTLFGGSWGSALALVYAIKHPQVVDKIFLRALFLAREKDWSEALMGLGKMFYPYEHQRFMDSIPK 163          
BLAST of FC931330 vs. ExPASy Swiss-Prot
Match: PIP_MYCPN (Putative proline iminopeptidase OS=Mycoplasma pneumoniae GN=pip PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.505e-31
Identity = 68/159 (42.77%), Postives = 95/159 (59.75%), Query Frame = 2
Query:  215 PYSTGILKVSDIHTIYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIPR 691
            P  +G LKV + H +Y+  +GNP G   +++HGGPG GT     ++FD D   +IL DQRG G+S     L  NTT DL+ D+E LRQHL++  W +FGGSWGSTLAL Y++ HP  V  + LR +FL R+++      G     YP   ++    IP+
Sbjct:    5 PKQSGYLKVGNGHEVYFWTAGNPQGKSALYVHGGPGSGTDAGCLKYFDLDTTYVILLDQRGCGQSKAVNPLLHNTTQDLVGDLEALRQHLKLERWTLFGGSWGSTLALVYAITHPQVVEQVFLRALFLGREQDWAEMLLGLGKLFYPYEHQTLLKAIPQ 163          
The following BLAST results are available for this feature:
BLAST of FC931330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PIP_MYCGE6.757e-3244.52Putative proline iminopeptidase OS=Mycoplasma geni... [more]
PIP_MYCPN1.505e-3142.77Putative proline iminopeptidase OS=Mycoplasma pneu... [more]

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Properties
Property NameValue
Genbank descriptionC34104A01EF PostHarvP1 Citrus clementina cDNA clone C34104A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931330 ID=FC931330; Name=FC931330; organism=Citrus clementina; type=EST; length=708bp
GACTTCACGTACTTCCTCGCTTCCTCACACCTCCACTTTATCTCGTCTCA
GGTTCCTCCCTTCATCCCATCAGAATTTCACTCTCGCAGGGAGGAAGGAT
TTAGTAATACGTGCACAAAATTTTGGGGTTAAGAGTGAGCCAAAGCTCAT
TGATATGATGGAATCAGGAAAGGAATTACCAGAATTGAATACGAATCTTT
ATCCTTATGTAGAGCCATACAGTACAGGCATTTTGAAGGTTTCTGATATT
CACACAATCTACTGGGAGCAGTCTGGAAACCCTACCGGGCATCCTGTTGT
GTTTCTTCATGGAGGTCCAGGAGGAGGCACTACACCAAGTAATCGAAGAT
TCTTTGATCCCGATTTTTACCGTATCATTTTATTTGATCAGCGAGGTGCA
GGAAAAAGTACCCCTCATGCTTGCTTGGATCAAAACACCACATGGGATCT
CATTGATGACATTGAAAAGTTGAGACAACACCTAGAAATTCCAGAATGGC
AGGTATTTGGTGGATCATGGGGAAGCACACTTGCTCTTGCATACAGCCTG
GCACACCCCGACAAGGTTACTGGCTTGGTCCTCAGGGGGATCTTTCTTTT
GCGAAAGAAAGAGATTGATTGGTTTTATGAGGGTGGTGCTGCTGCTATAT
ACCCTGATGCATGGGAGTCATTCAGAGACCTCATTCCNAGAAATGAAAGA
AGTGTTTT
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