FC931384

Overview
NameFC931384
Unique NameFC931384
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15321 contig Ccv1_Contig15321:1..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL1_PYRFU (50S ribosomal protein L1P OS=Pyrococcus furiosus GN=rpl1p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 8.393e-14
Identity = 53/190 (27.89%), Postives = 90/190 (47.37%), Query Frame = 1
Query:   91 REAISSIVQYSKETNK-RNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQ-ESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 651
            R+ I   V+ +K   K RNFT+++E+ + LK+ D ++ + RF   V LPH     +K+ ++ D    E A K+GLD +                     Y  F+A   ++ +I R LG  L    K P +V      L   V + K TV+ QLK    +   VG   M +++I +N++  +N ++  L++
Sbjct:    5 RQKIVKAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARKLGLDVISSAELEEIASSPRQARKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVPPTLTDLTPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIEAVLNAIIGKLER 194          

HSP 2 Score: 22.7126 bits (47), Expect = 8.393e-14
Identity = 8/20 (40.00%), Postives = 14/20 (70.00%), Query Frame = 3
Query:  642 VEENWQNVRCLYLKSTMGPS 701
            +E     V+ +Y+K+TMGP+
Sbjct:  192 LERGESQVKSVYVKTTMGPA 211          
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL1_METB6 (50S ribosomal protein L1P OS=Methanoregula boonei (strain 6A8) GN=rpl1p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-13
Identity = 47/188 (25.00%), Postives = 89/188 (47.34%), Query Frame = 1
Query:   94 EAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDY-MDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 651
            EA+++ ++   +  KR F+E+I++ I LKN D  + K R   ++ LP+    K  +C++G    V +A+   +D  +  +                  Y  FLA  +V+ Q+ R LGP L   G+ P  +  Q  +   V   + +VK + K        VG+ +M  +Q+ +N+   +  + S+L++
Sbjct:    9 EAVTTAIE---KAPKRKFSESIDITINLKNIDMAQPKNRIDETILLPNGTGEKTGICVIGRGDIVTQAKDAKVDLILGPDEVERLGGAPREARRVASSYKYFLAETAVMPQVGRFLGPRLGPRGRMPMPIPGQTDIRPIVERLRNSVKIRTKDKTVFSTKVGSTAMTPEQVSENIDAILKRVESVLEQ 193          

HSP 2 Score: 27.335 bits (59), Expect = 1.841e-13
Identity = 10/21 (47.62%), Postives = 17/21 (80.95%), Query Frame = 3
Query:  639 IVEENWQNVRCLYLKSTMGPS 701
            ++E+   NVR +++K+TMGPS
Sbjct:  190 VLEQGHLNVRSVFVKTTMGPS 210          
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL1_METHJ (50S ribosomal protein L1P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl1p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.811e-13
Identity = 46/185 (24.86%), Postives = 86/185 (46.49%), Query Frame = 1
Query:  100 ISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDY-MDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLK 648
            I ++ +  ++  +R FTE++++ I LKN D  + K R   ++ LPH     +K+ +LG    V +A + G++  M  E                  +  FLA   V+  + R LGP L   G+ P  +     +   V   + +VK + K  +   + VG  +M E++I +N+   +  ++S L+
Sbjct:    8 IDALKKAKEQAPERKFTESVDMTINLKNIDMSQPKNRIDETILLPHGNGRVVKIAVLGSGDIVTQARESGVELIMGPEEIERLGGAPREARKIASEHQFFLAETQVMSLVGRWLGPRLGPRGRMPQPIPAGTDIRPIVERLRKSVKIRTKDKMSFSLKVGTTAMSEEEIAENIDAVLKRILSKLE 192          

HSP 2 Score: 24.2534 bits (51), Expect = 6.811e-13
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  663 VRCLYLKSTMGPS 701
            VR +Y+K+TMGPS
Sbjct:  198 VRSVYIKTTMGPS 210          
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL1_UNCMA (50S ribosomal protein L1P OS=Uncultured methanogenic archaeon RC-I GN=rpl1p PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 9.296e-12
Identity = 47/191 (24.61%), Postives = 83/191 (43.46%), Query Frame = 1
Query:   85 ALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYM-DVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 651
            A +E + ++ +      KRNF+E+++L I LKN D  + K R    + LP      +KV +    +    AEK G DY+   E                   + F+A  + +  I + LG  L   GK P  +  Q  + + +   K ++K + K  L     +G  +M  ++I +N+   +  L + L+K
Sbjct:    2 ARKETVEAVKKALASRPKRNFSESVDLAINLKNIDMSQPKNRVDEDIILPSGLGKTIKVAVFAKGEVAVNAEKAGADYVFPPEEIEKLGADKPRAKKLASEVNFFIAETAYMPTIGKRLGTVLGPRGKMPAPLPPQADVTALITRQKKSIKIRSKDRLTFHATIGTETMTPEEIAENIDAIIKRLETKLEK 192          

HSP 2 Score: 26.9498 bits (58), Expect = 9.296e-12
Identity = 9/20 (45.00%), Postives = 16/20 (80.00%), Query Frame = 3
Query:  642 VEENWQNVRCLYLKSTMGPS 701
            +E+  QN+  +Y+K+TMGP+
Sbjct:  190 LEKGKQNIHAIYVKTTMGPA 209          
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL1_METJA (50S ribosomal protein L1P OS=Methanocaldococcus jannaschii GN=rpl1p PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.472e-11
Identity = 51/189 (26.98%), Postives = 84/189 (44.44%), Query Frame = 1
Query:   91 REAISSIVQYSKETNK-RNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 651
            REA+   V+ ++E  K RNFT++ E    LK  D +K + R    V LPH    + K+ ++G     ++AE++GL  +  E                  +  F+A   ++  I R +G  L   GK P  V    +++  V   K TV    +      V VGN  M ++QI  N++  +N +    +K
Sbjct:    3 REALLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPANANIKPLVERLKKTVVINTRDKPYFQVLVGNEKMTDEQIVDNIEAVLNVVAKKYEK 191          
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL1_METKA (50S ribosomal protein L1P OS=Methanopyrus kandleri GN=rpl1p PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 2.642e-11
Identity = 42/195 (21.54%), Postives = 83/195 (42.56%), Query Frame = 1
Query:   73 LQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYD-PQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKT 654
            +  + L E +  +V+YS     R F ET+++ + +K  D     +R    V LPH     + VC++ + +   EAE+ G   ++ E                  +  F A   ++  + R+LGP L   GK    V     + + +     T + +++    +   +G  +ME +Q+ +N    +  + S L+K+
Sbjct:    3 ITEEDLIEPLRKVVEYSPP---RRFLETVDMIVNVKGVDLSDPSQRIDKEVVLPHGRGKPVNVCVIAEGEMAREAEEAGATVINREKLEELAENVREAKKIARRHEFFYAQVDLMPDVGRVLGPVLGPRGKMAKPVPPNADIRALIERAHRTARVRMRDQPVIHTVIGARNMEPEQLAENAMAVLREITSELEKS 194          

HSP 2 Score: 26.5646 bits (57), Expect = 2.642e-11
Identity = 8/20 (40.00%), Postives = 16/20 (80.00%), Query Frame = 3
Query:  642 VEENWQNVRCLYLKSTMGPS 701
            +E++W  +  +Y+K+TMGP+
Sbjct:  191 LEKSWAQIDSVYVKTTMGPA 210          
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL1_METST (50S ribosomal protein L1P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl1p PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 7.510e-11
Identity = 45/193 (23.32%), Postives = 89/193 (46.11%), Query Frame = 1
Query:   79 SDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYM-DVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 651
            +  + EA+  +++ SK    RNFT++I++ I + + D  K + R    V LP+     +K+  + + +   +AE+ G D + + E                  Y  F+A   ++  + R LGP L    K P  +    + E+ +   ++T+K ++K    +   VG+  M E Q+ +N+   ++ L   L+K
Sbjct:    2 TQVIEEAVKKVLEESKP---RNFTQSIDVVITINDLDINKPENRLDEEVLLPNGRGKDVKIAFIAEGELAYQAEQAGADLVINKEKLEELGKNRPEAKKLANSYDFFVAQTDLMPTVGRFLGPVLGPRKKMPKPIPASANPETILGRLRSTIKIRVKDQPIIQSIVGSEDMTEAQVAENIDAIMDVLDRNLEK 191          

HSP 2 Score: 25.7942 bits (55), Expect = 7.510e-11
Identity = 9/21 (42.86%), Postives = 16/21 (76.19%), Query Frame = 3
Query:  642 VEENWQNVRCLYLKSTMGPST 704
            +E+  + ++ +YLK+TMGP T
Sbjct:  189 LEKGSKQIKAMYLKTTMGPVT 209          
The following BLAST results are available for this feature:
BLAST of FC931384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL1_PYRFU8.393e-1427.8950S ribosomal protein L1P OS=Pyrococcus furiosus G... [more]
RL1_METB61.841e-1325.0050S ribosomal protein L1P OS=Methanoregula boonei ... [more]
RL1_METHJ6.811e-1324.8650S ribosomal protein L1P OS=Methanospirillum hung... [more]
RL1_UNCMA9.296e-1224.6150S ribosomal protein L1P OS=Uncultured methanogen... [more]
RL1_METJA2.472e-1126.9850S ribosomal protein L1P OS=Methanocaldococcus ja... [more]
RL1_METKA2.642e-1121.5450S ribosomal protein L1P OS=Methanopyrus kandleri... [more]
RL1_METST7.510e-1123.3250S ribosomal protein L1P OS=Methanosphaera stadtm... [more]

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Properties
Property NameValue
Genbank descriptionC34104E09EF PostHarvP1 Citrus clementina cDNA clone C34104E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931384 ID=FC931384; Name=FC931384; organism=Citrus clementina; type=EST; length=744bp
GTAGGGTTTCTTTTTCGTCTTCGAAGAAAAAAAAATCTGTAAAGGACTCC
AAGCGCTTCAATCATGAGCAAGCTTCAGAGTGATGCACTGAGAGAGGCCA
TCTCTAGTATTGTGCAATACTCTAAGGAGACAAATAAGAGGAACTTCACC
GAGACTATTGAGCTTCAGATTGGTCTCAAGAACTATGATCCACAAAAGGA
CAAGCGTTTCAGTGGCTCTGTTAAGTTGCCTCACATTCCCCGCCCCAAGA
TGAAGGTCTGCATGCTTGGTGATGCTCAACATGTTGAAGAGGCCGAGAAG
ATTGGTTTGGACTACATGGATGTTGAAGGATTGAAAAAATTGAACAAGAA
CAAGAAATTGGTGAAGAAACTTGCCAAGAAATATCATGCTTTCTTGGCAT
CAGAGTCTGTCATCAAGCAGATTCCTCGTTTGTTGGGTCCTGGTCTCAAC
AAGGCAGGAAAGTTCCCTACCCTTGTTACTCACCAAGAATCCCTGGAGTC
CAAAGTCAACGAGACTAAGGCAACAGTGAAGTTCCAATTGAAGAAGGTGC
TTTGCATGGGAGTTGCTGTCGGAAACCTTTCAATGGAGGAGAAGCAGATC
TTCCAGAATGTTCAAATGAGTGTTAACTTCCTTGTCTCATTGTTGAAGAA
AACTGGCAGAATGTCAGGTGCCTCTATCTGAAGAGTACCATGGGTCCTTC
AACCGCATCTTTTAGAAATCTGCTTTATGTGAGTTTGTAGGGAA
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