FC931384
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL1_PYRFU (50S ribosomal protein L1P OS=Pyrococcus furiosus GN=rpl1p PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 8.393e-14 Identity = 53/190 (27.89%), Postives = 90/190 (47.37%), Query Frame = 1 Query: 91 REAISSIVQYSKETNK-RNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQ-ESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 651 R+ I V+ +K K RNFT+++E+ + LK+ D ++ + RF V LPH +K+ ++ D E A K+GLD + Y F+A ++ +I R LG L K P +V L V + K TV+ QLK + VG M +++I +N++ +N ++ L++ Sbjct: 5 RQKIVKAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARKLGLDVISSAELEEIASSPRQARKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVPPTLTDLTPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIEAVLNAIIGKLER 194 HSP 2 Score: 22.7126 bits (47), Expect = 8.393e-14 Identity = 8/20 (40.00%), Postives = 14/20 (70.00%), Query Frame = 3 Query: 642 VEENWQNVRCLYLKSTMGPS 701 +E V+ +Y+K+TMGP+ Sbjct: 192 LERGESQVKSVYVKTTMGPA 211
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL1_METB6 (50S ribosomal protein L1P OS=Methanoregula boonei (strain 6A8) GN=rpl1p PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-13 Identity = 47/188 (25.00%), Postives = 89/188 (47.34%), Query Frame = 1 Query: 94 EAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDY-MDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 651 EA+++ ++ + KR F+E+I++ I LKN D + K R ++ LP+ K +C++G V +A+ +D + + Y FLA +V+ Q+ R LGP L G+ P + Q + V + +VK + K VG+ +M +Q+ +N+ + + S+L++ Sbjct: 9 EAVTTAIE---KAPKRKFSESIDITINLKNIDMAQPKNRIDETILLPNGTGEKTGICVIGRGDIVTQAKDAKVDLILGPDEVERLGGAPREARRVASSYKYFLAETAVMPQVGRFLGPRLGPRGRMPMPIPGQTDIRPIVERLRNSVKIRTKDKTVFSTKVGSTAMTPEQVSENIDAILKRVESVLEQ 193 HSP 2 Score: 27.335 bits (59), Expect = 1.841e-13 Identity = 10/21 (47.62%), Postives = 17/21 (80.95%), Query Frame = 3 Query: 639 IVEENWQNVRCLYLKSTMGPS 701 ++E+ NVR +++K+TMGPS Sbjct: 190 VLEQGHLNVRSVFVKTTMGPS 210
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL1_METHJ (50S ribosomal protein L1P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl1p PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 6.811e-13 Identity = 46/185 (24.86%), Postives = 86/185 (46.49%), Query Frame = 1 Query: 100 ISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDY-MDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLK 648 I ++ + ++ +R FTE++++ I LKN D + K R ++ LPH +K+ +LG V +A + G++ M E + FLA V+ + R LGP L G+ P + + V + +VK + K + + VG +M E++I +N+ + ++S L+ Sbjct: 8 IDALKKAKEQAPERKFTESVDMTINLKNIDMSQPKNRIDETILLPHGNGRVVKIAVLGSGDIVTQARESGVELIMGPEEIERLGGAPREARKIASEHQFFLAETQVMSLVGRWLGPRLGPRGRMPQPIPAGTDIRPIVERLRKSVKIRTKDKMSFSLKVGTTAMSEEEIAENIDAVLKRILSKLE 192 HSP 2 Score: 24.2534 bits (51), Expect = 6.811e-13 Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 3 Query: 663 VRCLYLKSTMGPS 701 VR +Y+K+TMGPS Sbjct: 198 VRSVYIKTTMGPS 210
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL1_UNCMA (50S ribosomal protein L1P OS=Uncultured methanogenic archaeon RC-I GN=rpl1p PE=3 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 9.296e-12 Identity = 47/191 (24.61%), Postives = 83/191 (43.46%), Query Frame = 1 Query: 85 ALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYM-DVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 651 A +E + ++ + KRNF+E+++L I LKN D + K R + LP +KV + + AEK G DY+ E + F+A + + I + LG L GK P + Q + + + K ++K + K L +G +M ++I +N+ + L + L+K Sbjct: 2 ARKETVEAVKKALASRPKRNFSESVDLAINLKNIDMSQPKNRVDEDIILPSGLGKTIKVAVFAKGEVAVNAEKAGADYVFPPEEIEKLGADKPRAKKLASEVNFFIAETAYMPTIGKRLGTVLGPRGKMPAPLPPQADVTALITRQKKSIKIRSKDRLTFHATIGTETMTPEEIAENIDAIIKRLETKLEK 192 HSP 2 Score: 26.9498 bits (58), Expect = 9.296e-12 Identity = 9/20 (45.00%), Postives = 16/20 (80.00%), Query Frame = 3 Query: 642 VEENWQNVRCLYLKSTMGPS 701 +E+ QN+ +Y+K+TMGP+ Sbjct: 190 LEKGKQNIHAIYVKTTMGPA 209
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL1_METJA (50S ribosomal protein L1P OS=Methanocaldococcus jannaschii GN=rpl1p PE=1 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.472e-11 Identity = 51/189 (26.98%), Postives = 84/189 (44.44%), Query Frame = 1 Query: 91 REAISSIVQYSKETNK-RNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 651 REA+ V+ ++E K RNFT++ E LK D +K + R V LPH + K+ ++G ++AE++GL + E + F+A ++ I R +G L GK P V +++ V K TV + V VGN M ++QI N++ +N + +K Sbjct: 3 REALLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPANANIKPLVERLKKTVVINTRDKPYFQVLVGNEKMTDEQIVDNIEAVLNVVAKKYEK 191
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL1_METKA (50S ribosomal protein L1P OS=Methanopyrus kandleri GN=rpl1p PE=3 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 2.642e-11 Identity = 42/195 (21.54%), Postives = 83/195 (42.56%), Query Frame = 1 Query: 73 LQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYD-PQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKT 654 + + L E + +V+YS R F ET+++ + +K D +R V LPH + VC++ + + EAE+ G ++ E + F A ++ + R+LGP L GK V + + + T + +++ + +G +ME +Q+ +N + + S L+K+ Sbjct: 3 ITEEDLIEPLRKVVEYSPP---RRFLETVDMIVNVKGVDLSDPSQRIDKEVVLPHGRGKPVNVCVIAEGEMAREAEEAGATVINREKLEELAENVREAKKIARRHEFFYAQVDLMPDVGRVLGPVLGPRGKMAKPVPPNADIRALIERAHRTARVRMRDQPVIHTVIGARNMEPEQLAENAMAVLREITSELEKS 194 HSP 2 Score: 26.5646 bits (57), Expect = 2.642e-11 Identity = 8/20 (40.00%), Postives = 16/20 (80.00%), Query Frame = 3 Query: 642 VEENWQNVRCLYLKSTMGPS 701 +E++W + +Y+K+TMGP+ Sbjct: 191 LEKSWAQIDSVYVKTTMGPA 210
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL1_METST (50S ribosomal protein L1P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl1p PE=3 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 7.510e-11 Identity = 45/193 (23.32%), Postives = 89/193 (46.11%), Query Frame = 1 Query: 79 SDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYM-DVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 651 + + EA+ +++ SK RNFT++I++ I + + D K + R V LP+ +K+ + + + +AE+ G D + + E Y F+A ++ + R LGP L K P + + E+ + ++T+K ++K + VG+ M E Q+ +N+ ++ L L+K Sbjct: 2 TQVIEEAVKKVLEESKP---RNFTQSIDVVITINDLDINKPENRLDEEVLLPNGRGKDVKIAFIAEGELAYQAEQAGADLVINKEKLEELGKNRPEAKKLANSYDFFVAQTDLMPTVGRFLGPVLGPRKKMPKPIPASANPETILGRLRSTIKIRVKDQPIIQSIVGSEDMTEAQVAENIDAIMDVLDRNLEK 191 HSP 2 Score: 25.7942 bits (55), Expect = 7.510e-11 Identity = 9/21 (42.86%), Postives = 16/21 (76.19%), Query Frame = 3 Query: 642 VEENWQNVRCLYLKSTMGPST 704 +E+ + ++ +YLK+TMGP T Sbjct: 189 LEKGSKQIKAMYLKTTMGPVT 209 The following BLAST results are available for this feature:
BLAST of FC931384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 37
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931384 ID=FC931384; Name=FC931384; organism=Citrus clementina; type=EST; length=744bpback to top |