FC931386

Overview
NameFC931386
Unique NameFC931386
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9598 contig Ccv1_Contig9598:5..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931386 vs. ExPASy Swiss-Prot
Match: EF1G2_ARATH (Probable elongation factor 1-gamma 2 OS=Arabidopsis thaliana GN=At1g57720 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 52/173 (30.06%), Postives = 85/173 (49.13%), Query Frame = 2 
Query:  179 HKKEALLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFPD---KGTQLTCPGKPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENE-AKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPV-KKLFDARPHVSAWAADITSRPAWAKVL 682
            +K    L +NP G+VPVLE  +  +FES AI +Y++++  D    G+ L       A +  W +  +L+ D  ++ L W   + P  G     A  EE   + L + L+     L+ + +L   S TL D+  + N+NL   T + KK   A PHV  +   + ++P + KVL
Sbjct:   40 NKSPEFLKMNPIGKVPVLETPEGPIFESNAIARYVSRKNGDNSLNGSSLI----EYAHIEQWIDFSSLEID--ANMLKW---FAPRMGYAPFSAPAEEAAISALKRGLEALNTHLASNTFLVGHSVTLADIVTICNLNLGFATVMTKKFTSAFPHVERYFWTMVNQPEFKKVL 203
The following BLAST results are available for this feature:
BLAST of FC931386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
EF1G2_ARATH8.165e-1130.06Probable elongation factor 1-gamma 2 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC34104E11EF PostHarvP1 Citrus clementina cDNA clone C34104E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931386 ID=FC931386; Name=FC931386; organism=Citrus clementina; type=EST; length=690bp
ACCTCTCACAAGTCAAGTCACAACTCACAATAACAAGCGAGGGAAGGAAG
ACCCAAAGATGGCAGGCATCAAGGTCCACGGTTCTGTTTTCTCAACTGCT
ACGCAGCGAGTTTTCGCATCCCTCTACGAGAAGGAGCTCGAATACGAGCT
TGTCCCCGTAGACATGAAGGCTGGTGAACACAAAAAGGAGGCCCTCCTTT
CTTTGAATCCATTCGGTCAAGTTCCGGTGCTTGAACACGGCGACCAGAAG
CTCTTCGAATCAAGGGCAATCACCCAATACATCGCCCAGGAGTTTCCAGA
CAAAGGCACCCAGTTAACATGCCCAGGCAAGCCCATCGCCCCGTTATTGG
TATGGAAGGAGGTGGAGGCACTCCAGTTCGACCCCCCATCATCGAAGCTC
AACTGGGAGCTCGTGTACAAGCCAATGTTTGGAATGACCACTGATCCAGC
TGCGGTTGAAGAAAATGAAGCTAAGCTTGCCAAAATTTTAGATGTTTACG
AGGCCCGTTTGTCTCAGTCCAAATACTTGGCGTGCGACAGCTTCACCTTG
GTCGATTTGCATCATCTCCCCAATATTAATTTGTTGTTGGGGACGCCTGT
CAAGAAGCTGTTTGATGCACGCCCCCATGTTAGCGCATGGGCAGCTGATA
TCACTTCCAGACCGGCTTGGGCTAAGGTCCTTGCCTTGCT
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