FC931388 | Citrus Genome Database

Overview


Name	FC931388
Unique Name	FC931388
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	744

Libraries


Library Name	Type
PostHarvP1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig9336	contig	Ccv1_Contig9336:82..826.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC931388 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.088e-35
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 3

Query:  216 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 443
            MQIFVKTLTGKTITLEVESSDT++NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 136.732 bits (343), Expect = 1.251e-31
Identity = 67/71 (94.37%), Postives = 71/71 (100.00%), Query Frame = 3

Query:    3 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 215
            +TLTGKTITLEVESSDT++NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 116.316 bits (290), Expect = 1.521e-29
Identity = 56/63 (88.89%), Postives = 61/63 (96.83%), Query Frame = 3

Query:  444 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYTFRR 632
            MQIFVKTLTGKTITLEVESSDT++NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADY  ++
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 63

HSP 4 Score: 33.8834 bits (76), Expect = 1.521e-29
Identity = 15/17 (88.24%), Postives = 17/17 (100.00%), Query Frame = 2

Query:  620 HIQKESTLHLVLRLKGG 670
            +IQKESTLHLVLRL+GG
Sbjct:   60 NIQKESTLHLVLRLRGG 76

[Close]

BLAST of FC931388 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.258e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3

Query:  216 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 443
            MQIFVKTLTGKTI LEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 136.346 bits (342), Expect = 1.634e-31
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 3

Query:    3 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 215
            +TLTGKTI LEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 115.931 bits (289), Expect = 1.981e-29
Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = 3

Query:  444 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYTFRR 632
            MQIFVKTLTGKTI LEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY  ++
Sbjct:    1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 63

HSP 4 Score: 33.8834 bits (76), Expect = 1.981e-29
Identity = 15/17 (88.24%), Postives = 17/17 (100.00%), Query Frame = 2

Query:  620 HIQKESTLHLVLRLKGG 670
            +IQKESTLHLVLRL+GG
Sbjct:   60 NIQKESTLHLVLRLRGG 76

[Close]

BLAST of FC931388 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.258e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3

Query:  216 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 443
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 136.346 bits (342), Expect = 1.634e-31
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 3

Query:    3 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 215
            +TLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 115.931 bits (289), Expect = 1.981e-29
Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = 3

Query:  444 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYTFRR 632
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADY  ++
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 63

HSP 4 Score: 33.8834 bits (76), Expect = 1.981e-29
Identity = 15/17 (88.24%), Postives = 17/17 (100.00%), Query Frame = 2

Query:  620 HIQKESTLHLVLRLKGG 670
            +IQKESTLHLVLRL+GG
Sbjct:   60 NIQKESTLHLVLRLRGG 76

[Close]

BLAST of FC931388 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.209e-34
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 3

Query:  216 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 443
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 135.961 bits (341), Expect = 2.134e-31
Identity = 67/71 (94.37%), Postives = 71/71 (100.00%), Query Frame = 3

Query:    3 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 215
            +TLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 115.546 bits (288), Expect = 2.580e-29
Identity = 56/63 (88.89%), Postives = 61/63 (96.83%), Query Frame = 3

Query:  444 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYTFRR 632
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY  ++
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 63

HSP 4 Score: 33.8834 bits (76), Expect = 2.580e-29
Identity = 15/17 (88.24%), Postives = 17/17 (100.00%), Query Frame = 2

Query:  620 HIQKESTLHLVLRLKGG 670
            +IQKESTLHLVLRL+GG
Sbjct:   60 NIQKESTLHLVLRLRGG 76

[Close]

BLAST of FC931388 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.209e-34
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 3

Query:  216 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 443
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 135.961 bits (341), Expect = 2.134e-31
Identity = 67/71 (94.37%), Postives = 71/71 (100.00%), Query Frame = 3

Query:    3 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 215
            +TLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 115.546 bits (288), Expect = 2.580e-29
Identity = 56/63 (88.89%), Postives = 61/63 (96.83%), Query Frame = 3

Query:  444 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYTFRR 632
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY  ++
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 63

HSP 4 Score: 33.8834 bits (76), Expect = 2.580e-29
Identity = 15/17 (88.24%), Postives = 17/17 (100.00%), Query Frame = 2

Query:  620 HIQKESTLHLVLRLKGG 670
            +IQKESTLHLVLRL+GG
Sbjct:   60 NIQKESTLHLVLRLRGG 76

[Close]

BLAST of FC931388 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.579e-34
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 3

Query:  216 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 443
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 135.576 bits (340), Expect = 2.787e-31
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = 3

Query:    3 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 215
            +TLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 115.161 bits (287), Expect = 3.359e-29
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 3

Query:  444 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYTFRR 632
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADY  ++
Sbjct:    1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 63

HSP 4 Score: 33.8834 bits (76), Expect = 3.359e-29
Identity = 15/17 (88.24%), Postives = 17/17 (100.00%), Query Frame = 2

Query:  620 HIQKESTLHLVLRLKGG 670
            +IQKESTLHLVLRL+GG
Sbjct:   60 NIQKESTLHLVLRLRGG 76

[Close]

BLAST of FC931388 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.579e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3

Query:  216 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 443
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 135.576 bits (340), Expect = 2.787e-31
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = 3

Query:    3 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 215
            +TLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 115.161 bits (287), Expect = 3.359e-29
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 3

Query:  444 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYTFRR 632
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY  ++
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 63

HSP 4 Score: 33.8834 bits (76), Expect = 3.359e-29
Identity = 15/17 (88.24%), Postives = 17/17 (100.00%), Query Frame = 2

Query:  620 HIQKESTLHLVLRLKGG 670
            +IQKESTLHLVLRL+GG
Sbjct:   60 NIQKESTLHLVLRLRGG 76

[Close]

BLAST of FC931388 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.062e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3

Query:  216 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 443
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 135.191 bits (339), Expect = 3.640e-31
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = 3

Query:    3 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 215
            +TLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 114.775 bits (286), Expect = 4.374e-29
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 3

Query:  444 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYTFRR 632
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY  ++
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 63

HSP 4 Score: 33.8834 bits (76), Expect = 4.374e-29
Identity = 15/17 (88.24%), Postives = 17/17 (100.00%), Query Frame = 2

Query:  620 HIQKESTLHLVLRLKGG 670
            +IQKESTLHLVLRL+GG
Sbjct:   60 NIQKESTLHLVLRLRGG 76

[Close]

BLAST of FC931388 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.062e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3

Query:  216 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 443
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 135.191 bits (339), Expect = 3.640e-31
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = 3

Query:    3 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 215
            +TLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 114.775 bits (286), Expect = 4.374e-29
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 3

Query:  444 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYTFRR 632
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY  ++
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 63

HSP 4 Score: 33.8834 bits (76), Expect = 4.374e-29
Identity = 15/17 (88.24%), Postives = 17/17 (100.00%), Query Frame = 2

Query:  620 HIQKESTLHLVLRLKGG 670
            +IQKESTLHLVLRL+GG
Sbjct:   60 NIQKESTLHLVLRLRGG 76

[Close]

BLAST of FC931388 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.062e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3

Query:  216 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 443
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 135.191 bits (339), Expect = 3.640e-31
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = 3

Query:    3 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 215
            +TLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 114.775 bits (286), Expect = 4.374e-29
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 3

Query:  444 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYTFRR 632
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY  ++
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 63

HSP 4 Score: 33.8834 bits (76), Expect = 4.374e-29
Identity = 15/17 (88.24%), Postives = 17/17 (100.00%), Query Frame = 2

Query:  620 HIQKESTLHLVLRLKGG 670
            +IQKESTLHLVLRL+GG
Sbjct:   60 NIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of FC931388 vs. ExPASy Swiss-Prot

BLAST of FC931388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99


Match Name	E-value	Identity	Description
UBIQ_ACECL	7.088e-35	96.05	Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1	[more]
UBIQ_TRYCR	9.258e-35	97.37	Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1	[more]
UBIQ_ACACA	9.258e-35	97.37	Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1	[more]
UBIQ_GEOCY	1.209e-34	96.05	Ubiquitin OS=Geodia cydonium PE=3 SV=1	[more]
UBIQ_CAEEL	1.209e-34	96.05	Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ...	[more]
UBIQ_EUPEU	1.579e-34	96.05	Ubiquitin OS=Euplotes eurystomus PE=3 SV=1	[more]
UBIQ_AGLNE	1.579e-34	96.05	Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1	[more]
UBIQ_XENLA	2.062e-34	96.05	Ubiquitin OS=Xenopus laevis PE=1 SV=1	[more]
UBIQ_SPOFR	2.062e-34	96.05	Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1	[more]
UBIQ_RAT	2.062e-34	96.05	Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1	[more]

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Properties


Property Name	Value
Genbank description	C34104F01EF PostHarvP1 Citrus clementina cDNA clone C34104F01, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC931388 ID=FC931388; Name=FC931388; organism=Citrus clementina; type=EST; length=744bp
GTGAAACCCTAACCGGCAAGACCATTACTCTCGAAGTCGAGAGCTCCGAC
ACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCC
GGACCAGCAGCGTCTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGCA
CCTTGGCCGATTACAATATCCAAAAGGAATCGACGCTTCATCTGGTGCTT
CGTCTCCGTGGAGGCATGCAGATCTTCGTGAAAACCCTAACCGGCAAGAC
CATTACTCTCGAAGTTGAGAGCTCCGACACGATCGACAACGTCAAGGCCA
AGATCCAGGACAAGGAAGGGATTCCGCCGGACCAGCAGAGGCTGATCTTC
GCCGGAAAGCAACTCGAGGACGGCCGCACCTTGGCCGATTACAATATCCA
GAAGGAATCAACTCTTCACCTCGTGCTTCGTCTCCGTGGGGGCATGCAGA
TATTCGTCAAAACCCTAACGGGAAAGACGATTACCCTCGAAGTCGAGAGC
TCCGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGAT
TCCGCCGGACCAGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGATG
GAAGGACGCTCGCGGATTACACATTCAGAAGGAATCAACTCTTCATCTGG
TTTTGCGTCTGAAGGGTGGCATGCAGATTTTTGTTAGACATTGACCGGGA
AGACGATTACCTGGAGGTAGAGAGTCTGATACATTGACATGTCA