FC931395

Overview
NameFC931395
Unique NameFC931395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig602 contig Ccv1_Contig602:18..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPDE_NICSY (Spermidine synthase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 5.874e-68
Identity = 127/228 (55.70%), Postives = 160/228 (70.18%), Query Frame = 1
Query:  130 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            S+V+ GWFSE               +P+WPGEAHSLKV++ILF+GKS+YQ V+VF+S  YGKVLVLDG++QLTE+DECAYQEMIAHLPLCSIP+PK V                                   SK++FP++AVG+EDPRV LHIGD V FL+ V  G YDA+IVDSSDP+GPAQEL EKPFF++IA+ALRPGGV+   AES+WLH H+IE++++ CR+
Sbjct:   19 SSVLPGWFSEI--------------SPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMIAHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVVEVSKQFFPDVAVGYEDPRVNLHIGDGVAFLKNVAAGTYDAVIVDSSDPIGPAQELFEKPFFESIARALRPGGVVSTQAESIWLHMHIIEEIVANCRQ 232          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPD2_ARATH (Spermidine synthase 2 OS=Arabidopsis thaliana GN=SPDSYN2 PE=1 SV=2)

HSP 1 Score: 251.906 bits (642), Expect = 2.468e-66
Identity = 123/233 (52.79%), Postives = 157/233 (67.38%), Query Frame = 1
Query:  115 DAKCHSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            +  C S+++ GWFSE               +PMWPGEAHSLKV++ILF+GKS+YQ+V+VF+S  YGKVLVLDG++QLTE+DECAYQEMI HLPLCSI +PK V                                   +K+YFP +AVG+EDPRV L IGD V FL+    G YDA+IVDSSDP+GPA+EL EKPFF+++ +ALRPGGV+C  AES+WLH  +IED++S CR+
Sbjct:   40 EPSCMSSIIPGWFSEI--------------SPMWPGEAHSLKVEKILFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSISNPKKVLVIGGGDGGVLREVARHSSVEQIDICEIDKMVVDVAKQYFPNVAVGYEDPRVNLIIGDGVAFLKNAAEGTYDAVIVDSSDPIGPAKELFEKPFFESVNRALRPGGVVCTQAESLWLHMDIIEDIVSNCRD 258          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: PMT3_TOBAC (Putrescine N-methyltransferase 3 OS=Nicotiana tabacum GN=PMT3 PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.553e-52
Identity = 106/228 (46.49%), Postives = 139/228 (60.96%), Query Frame = 1
Query:  130 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            +++  GWFSE  +              +WPGEA SLKV+++LF+GKS+YQ+V++FES  YGKVL LDG +Q TE     Y EMI HLPL SIP+PK V                                   S+K+FP LA  F DPRV L +GD   F++    G YDAIIVDSSDP+GPA++L E+PFF+ +AKALRPGGV+C  AES+WLH H+I+ +I+ CR+
Sbjct:   88 NSIKPGWFSEFSA--------------LWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEMLRYPTIEKIDIVEIDDVVVDVSRKFFPYLAANFSDPRVTLVLGDGAAFVKAAQAGYYDAIIVDSSDPIGPAKDLFERPFFEAVAKALRPGGVVCTQAESIWLHMHIIKQIIANCRQ 301          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: PMT1_TOBAC (Putrescine N-methyltransferase 1 OS=Nicotiana tabacum GN=PMT1 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.028e-52
Identity = 106/227 (46.70%), Postives = 138/227 (60.79%), Query Frame = 1
Query:  133 TVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            ++  GWFSE  +              +WPGEA SLKV+++LF+GKS+YQ+V++FES  YGKVL LDG +Q TE     Y EMI HLPL SIP+PK V                                   S+K+FP LA  F DPRV L +GD   F++    G YDAIIVDSSDP+GPA++L E+PFF+ +AKALRPGGV+C  AES+WLH H+I+ +I+ CR+
Sbjct:   83 SIKPGWFSEFSA--------------LWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEMLRYPSIEKIDIVEIDDVVVDVSRKFFPYLAANFNDPRVTLVLGDGAAFVKAAQAGYYDAIIVDSSDPIGPAKDLFERPFFEAVAKALRPGGVVCTQAESIWLHMHIIKQIIANCRQ 295          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: PMT4_TOBAC (Putrescine N-methyltransferase 4 OS=Nicotiana tabacum GN=PMT4 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.708e-52
Identity = 106/228 (46.49%), Postives = 138/228 (60.53%), Query Frame = 1
Query:  130 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            +++  GWFSE  +              +WPGEA SLKV+++LF+GKS+YQ+V++FES  YGKVL LDG +Q TE     Y EMI HLPL SIP+PK V                                   S+K FP LA  F DPRV L +GD   F++    G YDAIIVDSSDP+GPA++L E+PFF+ +AKALRPGGV+C  AES+WLH H+I+ +I+ CR+
Sbjct:  126 NSIKLGWFSEFSA--------------LWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEMLRYPTIEKIDIVEIDDVVVDVSRKSFPYLAANFNDPRVTLVLGDGAAFVKAAQAGYYDAIIVDSSDPIGPAKDLFERPFFEAVAKALRPGGVVCTQAESIWLHMHIIKQIIANCRQ 339          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: PMT2_TOBAC (Putrescine N-methyltransferase 2 OS=Nicotiana tabacum GN=PMT2 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.243e-51
Identity = 105/223 (47.09%), Postives = 135/223 (60.54%), Query Frame = 1
Query:  145 GWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            GWFSE  +              +WPGEA SLKV+++LF+GKS+YQ+V++FES  YGKVL LDG +Q TE     Y EMI HLPL SIP+PK V                                   S+K+FP LA  F DPRV L +GD   F++      YDAIIVDSSDP+GPA++L E+PFF+ +AKALRPGGV+C  AES+WLH H+I+ +I+ CR+
Sbjct:   65 GWFSEFSA--------------LWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEMLRYPTIEKIDIVEIDDVVVDVSRKFFPYLAANFNDPRVTLVLGDGAAFVKAAQAEYYDAIIVDSSDPIGPAKDLFERPFFEAVAKALRPGGVVCTQAESIWLHMHIIKQIIANCRQ 273          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_DICDI (Spermidine synthase OS=Dictyostelium discoideum GN=spsA PE=3 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 4.096e-45
Identity = 94/226 (41.59%), Postives = 131/226 (57.96%), Query Frame = 1
Query:  136 VVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            + +GWFSE                  WPG + SL+V+++L   KSEYQ+ LVF+S ++G VLVLDG++Q TE+DE AYQEMI H+PL S PSPK V                                   S+ + P + VGF+ P+V L IGD +EF+RQ  +GE+D II DSSDP+GPAQ L E+ +++ +  AL PGG++C+  ESMWLH   I+ + + C+E
Sbjct:    4 IQNGWFSEISE--------------FWPGNSFSLEVEKVLHHEKSEYQDFLVFKSKSFGNVLVLDGVIQATERDEFAYQEMITHIPLFSHPSPKRVLVVGGGDGGVLREVVKHPLVESVTLCEIDKGVIEASRNFLPNMRVGFDHPKVTLFIGDGMEFMRQ-RKGEFDVIITDSSDPIGPAQGLFERAYYELLKAALAPGGIVCSQCESMWLHLDTIKGLTTFCKE 214          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_SCHPO (Spermidine synthase OS=Schizosaccharomyces pombe GN=SPBC12C2.07c PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.468e-44
Identity = 96/225 (42.67%), Postives = 130/225 (57.78%), Query Frame = 1
Query:  127 HSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMIS 696
            H  +  GWF E               N MWPG+A +LKVK++L+ GKS+YQ+VLVFES  YG VLVLDG +Q TE+DE +YQEMIAHL L S P+PK V                                   SK+Y PE++ GF  P+V++HIGD  +FL+   +  +D II DSSDP GPA+ L +KP+F  ++ ALR GGV+   AE MW+H  +I ++++
Sbjct:    8 HPLIKDGWFREI--------------NNMWPGQAMTLKVKKVLYAGKSKYQDVLVFESETYGHVLVLDGAIQATERDEFSYQEMIAHLALNSHPNPKKVLVIGGGDGGVLREVVKHECVEEAILCDIDEDVIKVSKQYLPEMSAGFNHPKVKVHIGDGFKFLQDY-QNTFDVIITDSSDPDGPAEALFQKPYFQLLSDALRGGGVITTQAECMWIHLGVISNVLT 217          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_YEAST (Spermidine synthase OS=Saccharomyces cerevisiae GN=SPE3 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.834e-43
Identity = 95/229 (41.48%), Postives = 126/229 (55.02%), Query Frame = 1
Query:  127 HSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            H T+V GWF E   T             MWPG+A +LKV+++L   KS+YQ+VL+F+S  YG VLVLD ++Q TE+DE AYQEMIAHL L S P+PK V                                   SK+Y PE+A  +  P+V+ HIGD  +FLR   +  +D II DSSDP GPA+ L +K +F  +  AL   GV+   AESMW+H  +I+D+   C E
Sbjct:    7 HPTIVDGWFREISDT-------------MWPGQAMTLKVEKVLHHEKSKYQDVLIFKSTTYGNVLVLDNVIQATERDEFAYQEMIAHLALNSHPNPKKVLVIGGGDGGVLREVVKHDSVEEAWLCDIDEAVIRLSKEYLPEMAASYSHPKVKTHIGDGFQFLRDY-QNTFDVIITDSSDPEGPAETLFQKEYFQLLNSALTEKGVITTQAESMWIHLPIIKDLKKACSE 221          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_NEUCR (Spermidine synthase OS=Neurospora crassa GN=spe-3 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.781e-40
Identity = 89/229 (38.86%), Postives = 125/229 (54.59%), Query Frame = 1
Query:  127 HSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            H T+  GWF E  +              MWPG+A +LKV+++L   KS YQ+VL+F+S  +G VLVLD ++Q TE+DE +YQEMI HL + S P+PK V                                   SK++ P ++ GFE P+V++H+GD  +FL    +  +D II DSSDP GPA+ L +KP+F  +  ALR GGV+   AE+ WLH  LI  +   C+E
Sbjct:    6 HPTIQDGWFREISN--------------MWPGQAMTLKVEKVLHHEKSLYQDVLIFKSTDHGNVLVLDNVIQCTERDEFSYQEMITHLAMNSHPNPKKVLVIGGGDGGVLREVVKHDCVEEAILCDIDEAVIRLSKQFLPHMSAGFEHPKVKVHVGDGFKFLEDF-KNTFDVIITDSSDPEGPAESLFQKPYFQLLHDALREGGVITTQAENQWLHLPLITKLKKDCKE 219          
The following BLAST results are available for this feature:
BLAST of FC931395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
SPDE_NICSY5.874e-6855.70Spermidine synthase OS=Nicotiana sylvestris PE=2 S... [more]
SPD2_ARATH2.468e-6652.79Spermidine synthase 2 OS=Arabidopsis thaliana GN=S... [more]
PMT3_TOBAC1.553e-5246.49Putrescine N-methyltransferase 3 OS=Nicotiana taba... [more]
PMT1_TOBAC2.028e-5246.70Putrescine N-methyltransferase 1 OS=Nicotiana taba... [more]
PMT4_TOBAC7.708e-5246.49Putrescine N-methyltransferase 4 OS=Nicotiana taba... [more]
PMT2_TOBAC2.243e-5147.09Putrescine N-methyltransferase 2 OS=Nicotiana taba... [more]
SPEE_DICDI4.096e-4541.59Spermidine synthase OS=Dictyostelium discoideum GN... [more]
SPEE_SCHPO3.468e-4442.67Spermidine synthase OS=Schizosaccharomyces pombe G... [more]
SPEE_YEAST3.834e-4341.48Spermidine synthase OS=Saccharomyces cerevisiae GN... [more]
SPEE_NEUCR1.781e-4038.86Spermidine synthase OS=Neurospora crassa GN=spe-3 ... [more]

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Properties
Property NameValue
Genbank descriptionC34104F08EF PostHarvP1 Citrus clementina cDNA clone C34104F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931395 ID=FC931395; Name=FC931395; organism=Citrus clementina; type=EST; length=712bp
GGAAAAGGTTTGGGATGCCAGAAGACTATGGATGGGAAGGAGAGTAACAA
GAATGGTTCAGCGGGGGCAATCCCTTCTTGTTGCTTGAAAGCAAGGGCTT
CAGCCCCAGAGCTTGATGCCAAATGCCACTCCACTGTTGTTTCTGGGTGG
TTTTCAGAATCTCAGTCTACCTCTGATAAAACTGGCAAAACAATGTACTT
CAACAATCCAATGTGGCCAGGAGAGGCCCATTCATTGAAAGTAAAAGAAA
TTTTATTCAAGGGAAAGTCTGAGTACCAAGAGGTCCTGGTTTTTGAGTCA
TTGGCATATGGGAAAGTGCTTGTTCTTGATGGAATTGTTCAACTAACGGA
GAAAGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTTTGTT
CGATTCCATCTCCGAAAACCGTTTCTAAAAAGTATTTTCCTGAGCTAGCT
GTTGGTTTTGAGGATCCTCGTGTACGACTGCACATTGGTGATGCTGTTGA
ATTCCTACGGCAAGTGCCCAGAGGGGAATATGATGCAATTATTGTTGATT
CATCAGACCCTGTAGGTCCTGCTCAAGAGCTTGTAGAGAAGCCATTTTTT
GACACAATTGCTAAAGCATTAAGGCCTGGAGGTGTCCTCTGTAACATGGC
AGAAAGTATGTGGCTTCATACTCACCTTATTGAGGACATGATTTCTATTT
GTCGTGAAACAT
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