FC931395
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPDE_NICSY (Spermidine synthase OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 257.299 bits (656), Expect = 5.874e-68 Identity = 127/228 (55.70%), Postives = 160/228 (70.18%), Query Frame = 1 Query: 130 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708 S+V+ GWFSE +P+WPGEAHSLKV++ILF+GKS+YQ V+VF+S YGKVLVLDG++QLTE+DECAYQEMIAHLPLCSIP+PK V SK++FP++AVG+EDPRV LHIGD V FL+ V G YDA+IVDSSDP+GPAQEL EKPFF++IA+ALRPGGV+ AES+WLH H+IE++++ CR+ Sbjct: 19 SSVLPGWFSEI--------------SPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMIAHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVVEVSKQFFPDVAVGYEDPRVNLHIGDGVAFLKNVAAGTYDAVIVDSSDPIGPAQELFEKPFFESIARALRPGGVVSTQAESIWLHMHIIEEIVANCRQ 232
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPD2_ARATH (Spermidine synthase 2 OS=Arabidopsis thaliana GN=SPDSYN2 PE=1 SV=2) HSP 1 Score: 251.906 bits (642), Expect = 2.468e-66 Identity = 123/233 (52.79%), Postives = 157/233 (67.38%), Query Frame = 1 Query: 115 DAKCHSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708 + C S+++ GWFSE +PMWPGEAHSLKV++ILF+GKS+YQ+V+VF+S YGKVLVLDG++QLTE+DECAYQEMI HLPLCSI +PK V +K+YFP +AVG+EDPRV L IGD V FL+ G YDA+IVDSSDP+GPA+EL EKPFF+++ +ALRPGGV+C AES+WLH +IED++S CR+ Sbjct: 40 EPSCMSSIIPGWFSEI--------------SPMWPGEAHSLKVEKILFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSISNPKKVLVIGGGDGGVLREVARHSSVEQIDICEIDKMVVDVAKQYFPNVAVGYEDPRVNLIIGDGVAFLKNAAEGTYDAVIVDSSDPIGPAKELFEKPFFESVNRALRPGGVVCTQAESLWLHMDIIEDIVSNCRD 258
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: PMT3_TOBAC (Putrescine N-methyltransferase 3 OS=Nicotiana tabacum GN=PMT3 PE=3 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 1.553e-52 Identity = 106/228 (46.49%), Postives = 139/228 (60.96%), Query Frame = 1 Query: 130 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708 +++ GWFSE + +WPGEA SLKV+++LF+GKS+YQ+V++FES YGKVL LDG +Q TE Y EMI HLPL SIP+PK V S+K+FP LA F DPRV L +GD F++ G YDAIIVDSSDP+GPA++L E+PFF+ +AKALRPGGV+C AES+WLH H+I+ +I+ CR+ Sbjct: 88 NSIKPGWFSEFSA--------------LWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEMLRYPTIEKIDIVEIDDVVVDVSRKFFPYLAANFSDPRVTLVLGDGAAFVKAAQAGYYDAIIVDSSDPIGPAKDLFERPFFEAVAKALRPGGVVCTQAESIWLHMHIIKQIIANCRQ 301
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: PMT1_TOBAC (Putrescine N-methyltransferase 1 OS=Nicotiana tabacum GN=PMT1 PE=2 SV=1) HSP 1 Score: 205.682 bits (522), Expect = 2.028e-52 Identity = 106/227 (46.70%), Postives = 138/227 (60.79%), Query Frame = 1 Query: 133 TVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708 ++ GWFSE + +WPGEA SLKV+++LF+GKS+YQ+V++FES YGKVL LDG +Q TE Y EMI HLPL SIP+PK V S+K+FP LA F DPRV L +GD F++ G YDAIIVDSSDP+GPA++L E+PFF+ +AKALRPGGV+C AES+WLH H+I+ +I+ CR+ Sbjct: 83 SIKPGWFSEFSA--------------LWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEMLRYPSIEKIDIVEIDDVVVDVSRKFFPYLAANFNDPRVTLVLGDGAAFVKAAQAGYYDAIIVDSSDPIGPAKDLFERPFFEAVAKALRPGGVVCTQAESIWLHMHIIKQIIANCRQ 295
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: PMT4_TOBAC (Putrescine N-methyltransferase 4 OS=Nicotiana tabacum GN=PMT4 PE=3 SV=1) HSP 1 Score: 203.756 bits (517), Expect = 7.708e-52 Identity = 106/228 (46.49%), Postives = 138/228 (60.53%), Query Frame = 1 Query: 130 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708 +++ GWFSE + +WPGEA SLKV+++LF+GKS+YQ+V++FES YGKVL LDG +Q TE Y EMI HLPL SIP+PK V S+K FP LA F DPRV L +GD F++ G YDAIIVDSSDP+GPA++L E+PFF+ +AKALRPGGV+C AES+WLH H+I+ +I+ CR+ Sbjct: 126 NSIKLGWFSEFSA--------------LWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEMLRYPTIEKIDIVEIDDVVVDVSRKSFPYLAANFNDPRVTLVLGDGAAFVKAAQAGYYDAIIVDSSDPIGPAKDLFERPFFEAVAKALRPGGVVCTQAESIWLHMHIIKQIIANCRQ 339
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: PMT2_TOBAC (Putrescine N-methyltransferase 2 OS=Nicotiana tabacum GN=PMT2 PE=3 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 2.243e-51 Identity = 105/223 (47.09%), Postives = 135/223 (60.54%), Query Frame = 1 Query: 145 GWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708 GWFSE + +WPGEA SLKV+++LF+GKS+YQ+V++FES YGKVL LDG +Q TE Y EMI HLPL SIP+PK V S+K+FP LA F DPRV L +GD F++ YDAIIVDSSDP+GPA++L E+PFF+ +AKALRPGGV+C AES+WLH H+I+ +I+ CR+ Sbjct: 65 GWFSEFSA--------------LWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEMLRYPTIEKIDIVEIDDVVVDVSRKFFPYLAANFNDPRVTLVLGDGAAFVKAAQAEYYDAIIVDSSDPIGPAKDLFERPFFEAVAKALRPGGVVCTQAESIWLHMHIIKQIIANCRQ 273
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_DICDI (Spermidine synthase OS=Dictyostelium discoideum GN=spsA PE=3 SV=2) HSP 1 Score: 181.415 bits (459), Expect = 4.096e-45 Identity = 94/226 (41.59%), Postives = 131/226 (57.96%), Query Frame = 1 Query: 136 VVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708 + +GWFSE WPG + SL+V+++L KSEYQ+ LVF+S ++G VLVLDG++Q TE+DE AYQEMI H+PL S PSPK V S+ + P + VGF+ P+V L IGD +EF+RQ +GE+D II DSSDP+GPAQ L E+ +++ + AL PGG++C+ ESMWLH I+ + + C+E Sbjct: 4 IQNGWFSEISE--------------FWPGNSFSLEVEKVLHHEKSEYQDFLVFKSKSFGNVLVLDGVIQATERDEFAYQEMITHIPLFSHPSPKRVLVVGGGDGGVLREVVKHPLVESVTLCEIDKGVIEASRNFLPNMRVGFDHPKVTLFIGDGMEFMRQ-RKGEFDVIITDSSDPIGPAQGLFERAYYELLKAALAPGGIVCSQCESMWLHLDTIKGLTTFCKE 214
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_SCHPO (Spermidine synthase OS=Schizosaccharomyces pombe GN=SPBC12C2.07c PE=2 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 3.468e-44 Identity = 96/225 (42.67%), Postives = 130/225 (57.78%), Query Frame = 1 Query: 127 HSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMIS 696 H + GWF E N MWPG+A +LKVK++L+ GKS+YQ+VLVFES YG VLVLDG +Q TE+DE +YQEMIAHL L S P+PK V SK+Y PE++ GF P+V++HIGD +FL+ + +D II DSSDP GPA+ L +KP+F ++ ALR GGV+ AE MW+H +I ++++ Sbjct: 8 HPLIKDGWFREI--------------NNMWPGQAMTLKVKKVLYAGKSKYQDVLVFESETYGHVLVLDGAIQATERDEFSYQEMIAHLALNSHPNPKKVLVIGGGDGGVLREVVKHECVEEAILCDIDEDVIKVSKQYLPEMSAGFNHPKVKVHIGDGFKFLQDY-QNTFDVIITDSSDPDGPAEALFQKPYFQLLSDALRGGGVITTQAECMWIHLGVISNVLT 217
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_YEAST (Spermidine synthase OS=Saccharomyces cerevisiae GN=SPE3 PE=1 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 3.834e-43 Identity = 95/229 (41.48%), Postives = 126/229 (55.02%), Query Frame = 1 Query: 127 HSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708 H T+V GWF E T MWPG+A +LKV+++L KS+YQ+VL+F+S YG VLVLD ++Q TE+DE AYQEMIAHL L S P+PK V SK+Y PE+A + P+V+ HIGD +FLR + +D II DSSDP GPA+ L +K +F + AL GV+ AESMW+H +I+D+ C E Sbjct: 7 HPTIVDGWFREISDT-------------MWPGQAMTLKVEKVLHHEKSKYQDVLIFKSTTYGNVLVLDNVIQATERDEFAYQEMIAHLALNSHPNPKKVLVIGGGDGGVLREVVKHDSVEEAWLCDIDEAVIRLSKEYLPEMAASYSHPKVKTHIGDGFQFLRDY-QNTFDVIITDSSDPEGPAETLFQKEYFQLLNSALTEKGVITTQAESMWIHLPIIKDLKKACSE 221
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_NEUCR (Spermidine synthase OS=Neurospora crassa GN=spe-3 PE=3 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 1.781e-40 Identity = 89/229 (38.86%), Postives = 125/229 (54.59%), Query Frame = 1 Query: 127 HSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708 H T+ GWF E + MWPG+A +LKV+++L KS YQ+VL+F+S +G VLVLD ++Q TE+DE +YQEMI HL + S P+PK V SK++ P ++ GFE P+V++H+GD +FL + +D II DSSDP GPA+ L +KP+F + ALR GGV+ AE+ WLH LI + C+E Sbjct: 6 HPTIQDGWFREISN--------------MWPGQAMTLKVEKVLHHEKSLYQDVLIFKSTDHGNVLVLDNVIQCTERDEFSYQEMITHLAMNSHPNPKKVLVIGGGDGGVLREVVKHDCVEEAILCDIDEAVIRLSKQFLPHMSAGFEHPKVKVHVGDGFKFLEDF-KNTFDVIITDSSDPEGPAESLFQKPYFQLLHDALREGGVITTQAENQWLHLPLITKLKKDCKE 219 The following BLAST results are available for this feature:
BLAST of FC931395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 124
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931395 ID=FC931395; Name=FC931395; organism=Citrus clementina; type=EST; length=712bpback to top |