FC931395

Overview
NameFC931395
Unique NameFC931395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig602 contig Ccv1_Contig602:18..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_SULIK (Probable spermidine synthase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=speE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12
Identity = 56/186 (30.11%), Postives = 85/186 (45.70%), Query Frame = 1
Query:  217 PGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSP---------------------KTV---------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPV--GPAQELVEKPFFDTIAKALRPGGVLCNMAES 657
            P E H   ++++  + K+ YQ V + E   +GK L++DG VQ T  DE  Y E++ H  L S+P P                     K+V               +KKY  E   G FED R  L I D ++F+ +  + +YDAII+D +DP+    +  L  K F++ +   L  GG +   A S
Sbjct:   13 PYEFHGHLIEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKYLYEWHQGAFEDKRTSLVITDGLKFINET-KDKYDAIILDLTDPIKDSTSYMLYTKEFYEKLRGILNQGGGIVTQATS 197          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_SULIA (Probable spermidine synthase OS=Sulfolobus islandicus (strain M.16.27) GN=speE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12
Identity = 56/186 (30.11%), Postives = 85/186 (45.70%), Query Frame = 1
Query:  217 PGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSP---------------------KTV---------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPV--GPAQELVEKPFFDTIAKALRPGGVLCNMAES 657
            P E H   ++++  + K+ YQ V + E   +GK L++DG VQ T  DE  Y E++ H  L S+P P                     K+V               +KKY  E   G FED R  L I D ++F+ +  + +YDAII+D +DP+    +  L  K F++ +   L  GG +   A S
Sbjct:   13 PYEFHGHLIEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKYLYEWHQGAFEDKRTSLVITDGLKFINET-KDKYDAIILDLTDPIKDSTSYMLYTKEFYEKLRGILNQGGGIVTQATS 197          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_SULSO (Probable spermidine synthase OS=Sulfolobus solfataricus GN=speE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 55/186 (29.57%), Postives = 86/186 (46.24%), Query Frame = 1
Query:  217 PGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPS-PKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPV--GPAQELVEKPFFDTIAKALRPGGVLCNMAES 657
            P E H   ++++L + K+ YQ V + E   +GK L++DG VQ T  DE  Y E++ H  L S+   PK+V                                   +KKY  E   G FED R  L I D ++F+++  + +YDAII+D +DP+    +  L  K F++ + + L   G +   A S
Sbjct:   13 PYEFHGHLIEKVLAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLTKPPKSVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKYLYEWHQGAFEDKRTNLVITDGLKFIKET-KEKYDAIILDLTDPIKNSTSYMLYTKEFYEKLREILNERGGIVTQATS 197          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_PYRCJ (Probable spermidine synthase OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=speE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.269e-11
Identity = 48/179 (26.82%), Postives = 82/179 (45.81%), Query Frame = 1
Query:  235 LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRG--EYDAIIVDSSDPVGP--AQELVEKPFFDTIAKALRPGGVLCNMA 651
            +K+  I    KS YQE+++ ++  YG+VL+LD  +Q +  DE  Y E + H  + + P+P+ V                                   S+ Y P++  G F+DPR ++ I D   ++ +  +   +YD II+D +DP     A++L  + FF  I + L   GV+   A
Sbjct:   22 IKINAIHSVKKSPYQEIIIADTEDYGRVLILDDYIQSSYVDEQYYHESLVHPAMATHPNPRDVLILGGGEGATLREALKHGTVKRAVMVDIDRDVVELSRAYLPQMHQGAFDDPRAKVVIQDGFVYVEEAIKAGDKYDVIIMDLTDPYSSDIAKQLYTREFFAKIRRILNDDGVVVTQA 200          
The following BLAST results are available for this feature:
BLAST of FC931395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
SPEE_SULIK2.680e-1230.11Probable spermidine synthase OS=Sulfolobus islandi... [more]
SPEE_SULIA2.680e-1230.11Probable spermidine synthase OS=Sulfolobus islandi... [more]
SPEE_SULSO1.737e-1129.57Probable spermidine synthase OS=Sulfolobus solfata... [more]
SPEE_PYRCJ2.269e-1126.82Probable spermidine synthase OS=Pyrobaculum calidi... [more]

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Properties
Property NameValue
Genbank descriptionC34104F08EF PostHarvP1 Citrus clementina cDNA clone C34104F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931395 ID=FC931395; Name=FC931395; organism=Citrus clementina; type=EST; length=712bp
GGAAAAGGTTTGGGATGCCAGAAGACTATGGATGGGAAGGAGAGTAACAA
GAATGGTTCAGCGGGGGCAATCCCTTCTTGTTGCTTGAAAGCAAGGGCTT
CAGCCCCAGAGCTTGATGCCAAATGCCACTCCACTGTTGTTTCTGGGTGG
TTTTCAGAATCTCAGTCTACCTCTGATAAAACTGGCAAAACAATGTACTT
CAACAATCCAATGTGGCCAGGAGAGGCCCATTCATTGAAAGTAAAAGAAA
TTTTATTCAAGGGAAAGTCTGAGTACCAAGAGGTCCTGGTTTTTGAGTCA
TTGGCATATGGGAAAGTGCTTGTTCTTGATGGAATTGTTCAACTAACGGA
GAAAGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTTTGTT
CGATTCCATCTCCGAAAACCGTTTCTAAAAAGTATTTTCCTGAGCTAGCT
GTTGGTTTTGAGGATCCTCGTGTACGACTGCACATTGGTGATGCTGTTGA
ATTCCTACGGCAAGTGCCCAGAGGGGAATATGATGCAATTATTGTTGATT
CATCAGACCCTGTAGGTCCTGCTCAAGAGCTTGTAGAGAAGCCATTTTTT
GACACAATTGCTAAAGCATTAAGGCCTGGAGGTGTCCTCTGTAACATGGC
AGAAAGTATGTGGCTTCATACTCACCTTATTGAGGACATGATTTCTATTT
GTCGTGAAACAT
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