FC931395
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_SULIK (Probable spermidine synthase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=speE PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12 Identity = 56/186 (30.11%), Postives = 85/186 (45.70%), Query Frame = 1 Query: 217 PGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSP---------------------KTV---------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPV--GPAQELVEKPFFDTIAKALRPGGVLCNMAES 657 P E H ++++ + K+ YQ V + E +GK L++DG VQ T DE Y E++ H L S+P P K+V +KKY E G FED R L I D ++F+ + + +YDAII+D +DP+ + L K F++ + L GG + A S Sbjct: 13 PYEFHGHLIEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKYLYEWHQGAFEDKRTSLVITDGLKFINET-KDKYDAIILDLTDPIKDSTSYMLYTKEFYEKLRGILNQGGGIVTQATS 197
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_SULIA (Probable spermidine synthase OS=Sulfolobus islandicus (strain M.16.27) GN=speE PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12 Identity = 56/186 (30.11%), Postives = 85/186 (45.70%), Query Frame = 1 Query: 217 PGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSP---------------------KTV---------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPV--GPAQELVEKPFFDTIAKALRPGGVLCNMAES 657 P E H ++++ + K+ YQ V + E +GK L++DG VQ T DE Y E++ H L S+P P K+V +KKY E G FED R L I D ++F+ + + +YDAII+D +DP+ + L K F++ + L GG + A S Sbjct: 13 PYEFHGHLIEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKYLYEWHQGAFEDKRTSLVITDGLKFINET-KDKYDAIILDLTDPIKDSTSYMLYTKEFYEKLRGILNQGGGIVTQATS 197
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_SULSO (Probable spermidine synthase OS=Sulfolobus solfataricus GN=speE PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.737e-11 Identity = 55/186 (29.57%), Postives = 86/186 (46.24%), Query Frame = 1 Query: 217 PGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPS-PKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPV--GPAQELVEKPFFDTIAKALRPGGVLCNMAES 657 P E H ++++L + K+ YQ V + E +GK L++DG VQ T DE Y E++ H L S+ PK+V +KKY E G FED R L I D ++F+++ + +YDAII+D +DP+ + L K F++ + + L G + A S Sbjct: 13 PYEFHGHLIEKVLAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLTKPPKSVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKYLYEWHQGAFEDKRTNLVITDGLKFIKET-KEKYDAIILDLTDPIKNSTSYMLYTKEFYEKLREILNERGGIVTQATS 197
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_PYRCJ (Probable spermidine synthase OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=speE PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.269e-11 Identity = 48/179 (26.82%), Postives = 82/179 (45.81%), Query Frame = 1 Query: 235 LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRG--EYDAIIVDSSDPVGP--AQELVEKPFFDTIAKALRPGGVLCNMA 651 +K+ I KS YQE+++ ++ YG+VL+LD +Q + DE Y E + H + + P+P+ V S+ Y P++ G F+DPR ++ I D ++ + + +YD II+D +DP A++L + FF I + L GV+ A Sbjct: 22 IKINAIHSVKKSPYQEIIIADTEDYGRVLILDDYIQSSYVDEQYYHESLVHPAMATHPNPRDVLILGGGEGATLREALKHGTVKRAVMVDIDRDVVELSRAYLPQMHQGAFDDPRAKVVIQDGFVYVEEAIKAGDKYDVIIMDLTDPYSSDIAKQLYTREFFAKIRRILNDDGVVVTQA 200 The following BLAST results are available for this feature:
BLAST of FC931395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 124
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931395 ID=FC931395; Name=FC931395; organism=Citrus clementina; type=EST; length=712bpback to top |