FC931395
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_BACHD (Spermidine synthase OS=Bacillus halodurans GN=speE PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 7.265e-26 Identity = 67/192 (34.90%), Postives = 98/192 (51.04%), Query Frame = 1 Query: 238 KVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708 K+K L K+++Q++ V E+ +G +LVLDG+V TEKDE Y EM+AH+PL + P+PK V SKKY P +A DPRV + + D + + YD I+VDS++PVGPA +L EK F+ IAKAL+ G+ ++ W H LI + + +E Sbjct: 18 KIKRTLHTEKTDFQQLDVIETEEFGNMLVLDGMVMTTEKDEFVYHEMVAHVPLFTHPNPKHVLVVGGGDGGVIREVLKHPSVEKATLVEIDGKVIEYSKKYLPSIATALNDPRVDVQVDDGFLHIAKA-ESAYDVIMVDSTEPVGPAVKLFEKGFYQGIAKALKEDGIFVAQTDNPWFHGELIRKVYADVQE 208
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_METJA (Probable spermidine synthase OS=Methanocaldococcus jannaschii GN=speE PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25 Identity = 74/232 (31.90%), Postives = 116/232 (50.00%), Query Frame = 1 Query: 115 DAKCHSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICR 705 D KCH WF+E Y NN + A S++VK+IL++ KS +QE+ + ++ +GK L+LD Q TE+DE Y E+I+H+PL + P+P+ V KKY P+L+ ++ +V L I D ++++ + + +YD IIVD DPVGPA+ L EK F+ + K L G++ +ES + LI+ +ICR Sbjct: 6 DFKCHI-----WFTE------------YHNNNV----ALSVRVKDILYREKSGFQEIEIIDTYDFGKALILDNTFQTTERDEFIYHELISHIPLFTHPNPRNVLVIGGGDGGTVREVVKHKSVETVDFVELDEKVIEACKKYMPKLSCEIDNEKVNLIITDGIKYVAETEK-KYDVIIVDCPDPVGPAKGLFEKEFYKNVFKCLNDDGIMVQQSESPLYNLDLIQ---NICR 212
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_ALKOO (Spermidine synthase OS=Alkaliphilus oremlandii (strain OhILAs) GN=speE PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.605e-25 Identity = 68/190 (35.79%), Postives = 94/190 (49.47%), Query Frame = 1 Query: 211 MWPGEAH------SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 657 +W E H S+KV L+ G+SE+Q + VFES +GK LDG++ +TEKDE Y +MI H+P+ + P K V K+Y P+ A EDPRV ++ D ++F+R EYD IIVDS+DP GP + L K F+ KAL+ G+L N ES Sbjct: 3 LWYTEQHTEDVRFSIKVDNQLYSGQSEFQRIDVFESKEFGKFFTLDGLMMVTEKDEFIYHDMITHIPMATNPKIKNVLVIGAGDGGTVRELTRYETIENIDMVEIDKLVVDICKEYLPQTASKLEDPRVHIYYEDGLKFVR-TKENEYDLIIVDSTDPFGPGEGLFTKEFYGNCFKALKEDGILVNQHES 191
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_BACSK (Spermidine synthase OS=Bacillus clausii (strain KSM-K16) GN=speE PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 6.150e-25 Identity = 69/222 (31.08%), Postives = 109/222 (49.10%), Query Frame = 1 Query: 148 WFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708 WF+E Q+ ++ G TM K+K L K+++Q++ + E+ +G +L+LDG+V TEKDE Y EM+ H+PL + P+PK V SK Y P +A ED RV + + D + Q EYD I+VDS++PVGPA +L E+ F++ I+KAL+ G+ ++ W H L+ ++ +E Sbjct: 4 WFTEKQT--ERFGITM--------------KIKRTLHTEKTDFQQLDMVETEEFGNMLLLDGMVMTTEKDEFVYHEMVTHVPLFTHPNPKHVLVVGGGDGGAIREILKHPSVEKATLVDIDGKVIEYSKTYLPTIACALEDERVDVKVADGFMHIAQ-SANEYDVIMVDSTEPVGPAAKLFERGFYEGISKALKEDGIFVAQTDNPWFHQELVSNVYKDVKE 208
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_MOOTA (Spermidine synthase OS=Moorella thermoacetica (strain ATCC 39073) GN=speE PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 8.032e-25 Identity = 67/198 (33.84%), Postives = 102/198 (51.52%), Query Frame = 1 Query: 193 MYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLI 681 ++F+ P A S+++ + L K+ YQE+ V ++ AYG++L+LD I+Q T KDE Y EMIAH+PL + P+P+T +++Y PE+A G +D RV + D +E +RQ YD IIVDS+DP+GPA L F+ + +AL+ GV ES ++ LI Sbjct: 4 IWFSELQTPDLAISVRLNQTLHHEKTPYQELAVVDTEAYGRMLLLDNIIQTTVKDEFFYHEMIAHVPLNTHPNPRTALVIGGGDGGVVREIVKHPSIEKVTLVEIDARVVANAREYLPEIACGLDDARVEIRFEDGIEHVRQ-RENTYDVIIVDSTDPIGPAVGLFSAEFYRNVYRALKADGVFVAQTESPIFNSRLI 200
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_THISH (Spermidine synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=speE PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.986e-24 Identity = 63/187 (33.69%), Postives = 97/187 (51.87%), Query Frame = 1 Query: 226 AHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLI 681 A SL++KE L + ++ +Q++ ++E+ +G ++V+DG V LT++D Y EM++H L S PK V ++KYFPEL +DPR +L D +++++ G D II+DS+DPVGPA+ L F+ KAL PGG+L +ES LHT I Sbjct: 16 AFSLRMKEKLHEEQTPFQKIEIYETEGFGTLMVIDGCVMLTDRDNFIYHEMMSHPVLYSHSDPKNVLIIGGGDCGTLREVLKHPEVKSATQVDIDERVTRLAEKYFPELCDSNDDPRAKLLFDDGIKYVQDAAPGSLDVIIIDSTDPVGPAEGLFSTAFYRDCIKALGPGGLLVQQSESPLLHTDSI 202
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_CLOPS (Spermidine synthase OS=Clostridium perfringens (strain SM101 / Type A) GN=speE PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23 Identity = 68/215 (31.63%), Postives = 103/215 (47.91%), Query Frame = 1 Query: 211 MWPGEAH------SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHL---------IEDMISICR 705 +W E H S+KV E L+ GKS++Q + VF+S +G LDG++ +TEKDE Y +MI H+P+ + P+ K V ++Y P+ A +DPRV L D ++F+R V +YD IIVDS+DP GP + L + F+ KAL+ G+L N ES + + I++ +CR Sbjct: 3 LWYTEEHTDKVRFSIKVDEQLYSGKSDFQRIDVFKSQEFGTFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKNVLVIGAGDGGTVRELTRYETIEKIDMVEIDKLVVDVCREYLPQTANKLDDPRVSLFFEDGLKFVRSV-ENKYDLIIVDSTDPFGPGEGLFTREFYGNCFKALKEDGILVNQHESPYYEEYARGMKRAHKRIKECFPVCR 216
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_CLOPE (Spermidine synthase OS=Clostridium perfringens GN=speE PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23 Identity = 68/215 (31.63%), Postives = 103/215 (47.91%), Query Frame = 1 Query: 211 MWPGEAH------SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHL---------IEDMISICR 705 +W E H S+KV E L+ GKS++Q + VF+S +G LDG++ +TEKDE Y +MI H+P+ + P+ K V ++Y P+ A +DPRV L D ++F+R V +YD IIVDS+DP GP + L + F+ KAL+ G+L N ES + + I++ +CR Sbjct: 3 LWYTEEHTDKVRFSIKVDEQLYSGKSDFQRIDVFKSQEFGTFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKNVLVIGAGDGGTVRELTRYETIEKIDMVEIDKLVVDVCREYLPQTANKLDDPRVSLFFEDGLKFVRSV-ENKYDLIIVDSTDPFGPGEGLFTREFYGNCFKALKEDGILVNQHESPYYEEYARGMKRAHKRIKECFPVCR 216
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_CLOP1 (Spermidine synthase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=speE PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23 Identity = 68/215 (31.63%), Postives = 103/215 (47.91%), Query Frame = 1 Query: 211 MWPGEAH------SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHL---------IEDMISICR 705 +W E H S+KV E L+ GKS++Q + VF+S +G LDG++ +TEKDE Y +MI H+P+ + P+ K V ++Y P+ A +DPRV L D ++F+R V +YD IIVDS+DP GP + L + F+ KAL+ G+L N ES + + I++ +CR Sbjct: 3 LWYTEEHTDKVRFSIKVDEQLYSGKSDFQRIDVFKSQEFGTFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKNVLVIGAGDGGTVRELTRYETIEKIDMVEIDKLVVDVCREYLPQTANKLDDPRVSLFFEDGLKFVRSV-ENKYDLIIVDSTDPFGPGEGLFTREFYGNCFKALKEDGILVNQHESPYYEEYARGMKRAHKRIKECFPVCR 216
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_METCA (Spermidine synthase OS=Methylococcus capsulatus GN=speE PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.978e-23 Identity = 62/198 (31.31%), Postives = 101/198 (51.01%), Query Frame = 1 Query: 220 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708 G A SLK++ L + ++ +Q + ++++ ++GK++V+DG ++++D Y EM+ H L + P+PKTV +++YFPEL DPR L D ++++++ P G D IIVDS+DPVGPA+ L + FF + LR G+L +ES H LI M I R+ Sbjct: 16 GSALSLKIRAKLHEEQTPFQRIEIYDTESFGKLMVIDGCTMVSDRDNFLYHEMMTHPVLYTHPAPKTVWIIGGGDCGSLREVLKHSEVEKAVQIDIDERVTRLAERYFPELCEANGDPRAELLFIDGIQWVKEAPDGCVDVIIVDSTDPVGPAEGLFNEAFFRQCHRCLRTDGILVQQSESPLFHLPLIASMHRIMRQ 213 The following BLAST results are available for this feature:
BLAST of FC931395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 124
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931395 ID=FC931395; Name=FC931395; organism=Citrus clementina; type=EST; length=712bpback to top |