FC931395

Overview
NameFC931395
Unique NameFC931395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig602 contig Ccv1_Contig602:18..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_BACHD (Spermidine synthase OS=Bacillus halodurans GN=speE PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.265e-26
Identity = 67/192 (34.90%), Postives = 98/192 (51.04%), Query Frame = 1
Query:  238 KVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            K+K  L   K+++Q++ V E+  +G +LVLDG+V  TEKDE  Y EM+AH+PL + P+PK V                                   SKKY P +A    DPRV + + D    + +     YD I+VDS++PVGPA +L EK F+  IAKAL+  G+     ++ W H  LI  + +  +E
Sbjct:   18 KIKRTLHTEKTDFQQLDVIETEEFGNMLVLDGMVMTTEKDEFVYHEMVAHVPLFTHPNPKHVLVVGGGDGGVIREVLKHPSVEKATLVEIDGKVIEYSKKYLPSIATALNDPRVDVQVDDGFLHIAKA-ESAYDVIMVDSTEPVGPAVKLFEKGFYQGIAKALKEDGIFVAQTDNPWFHGELIRKVYADVQE 208          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_METJA (Probable spermidine synthase OS=Methanocaldococcus jannaschii GN=speE PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25
Identity = 74/232 (31.90%), Postives = 116/232 (50.00%), Query Frame = 1
Query:  115 DAKCHSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICR 705
            D KCH      WF+E            Y NN +    A S++VK+IL++ KS +QE+ + ++  +GK L+LD   Q TE+DE  Y E+I+H+PL + P+P+ V                                    KKY P+L+   ++ +V L I D ++++ +  + +YD IIVD  DPVGPA+ L EK F+  + K L   G++   +ES   +  LI+   +ICR
Sbjct:    6 DFKCHI-----WFTE------------YHNNNV----ALSVRVKDILYREKSGFQEIEIIDTYDFGKALILDNTFQTTERDEFIYHELISHIPLFTHPNPRNVLVIGGGDGGTVREVVKHKSVETVDFVELDEKVIEACKKYMPKLSCEIDNEKVNLIITDGIKYVAETEK-KYDVIIVDCPDPVGPAKGLFEKEFYKNVFKCLNDDGIMVQQSESPLYNLDLIQ---NICR 212          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_ALKOO (Spermidine synthase OS=Alkaliphilus oremlandii (strain OhILAs) GN=speE PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.605e-25
Identity = 68/190 (35.79%), Postives = 94/190 (49.47%), Query Frame = 1
Query:  211 MWPGEAH------SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 657
            +W  E H      S+KV   L+ G+SE+Q + VFES  +GK   LDG++ +TEKDE  Y +MI H+P+ + P  K V                                    K+Y P+ A   EDPRV ++  D ++F+R     EYD IIVDS+DP GP + L  K F+    KAL+  G+L N  ES
Sbjct:    3 LWYTEQHTEDVRFSIKVDNQLYSGQSEFQRIDVFESKEFGKFFTLDGLMMVTEKDEFIYHDMITHIPMATNPKIKNVLVIGAGDGGTVRELTRYETIENIDMVEIDKLVVDICKEYLPQTASKLEDPRVHIYYEDGLKFVR-TKENEYDLIIVDSTDPFGPGEGLFTKEFYGNCFKALKEDGILVNQHES 191          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_BACSK (Spermidine synthase OS=Bacillus clausii (strain KSM-K16) GN=speE PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.150e-25
Identity = 69/222 (31.08%), Postives = 109/222 (49.10%), Query Frame = 1
Query:  148 WFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            WF+E Q+  ++ G TM              K+K  L   K+++Q++ + E+  +G +L+LDG+V  TEKDE  Y EM+ H+PL + P+PK V                                   SK Y P +A   ED RV + + D    + Q    EYD I+VDS++PVGPA +L E+ F++ I+KAL+  G+     ++ W H  L+ ++    +E
Sbjct:    4 WFTEKQT--ERFGITM--------------KIKRTLHTEKTDFQQLDMVETEEFGNMLLLDGMVMTTEKDEFVYHEMVTHVPLFTHPNPKHVLVVGGGDGGAIREILKHPSVEKATLVDIDGKVIEYSKTYLPTIACALEDERVDVKVADGFMHIAQ-SANEYDVIMVDSTEPVGPAAKLFERGFYEGISKALKEDGIFVAQTDNPWFHQELVSNVYKDVKE 208          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_MOOTA (Spermidine synthase OS=Moorella thermoacetica (strain ATCC 39073) GN=speE PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.032e-25
Identity = 67/198 (33.84%), Postives = 102/198 (51.52%), Query Frame = 1
Query:  193 MYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLI 681
            ++F+    P  A S+++ + L   K+ YQE+ V ++ AYG++L+LD I+Q T KDE  Y EMIAH+PL + P+P+T                                    +++Y PE+A G +D RV +   D +E +RQ     YD IIVDS+DP+GPA  L    F+  + +AL+  GV     ES   ++ LI
Sbjct:    4 IWFSELQTPDLAISVRLNQTLHHEKTPYQELAVVDTEAYGRMLLLDNIIQTTVKDEFFYHEMIAHVPLNTHPNPRTALVIGGGDGGVVREIVKHPSIEKVTLVEIDARVVANAREYLPEIACGLDDARVEIRFEDGIEHVRQ-RENTYDVIIVDSTDPIGPAVGLFSAEFYRNVYRALKADGVFVAQTESPIFNSRLI 200          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_THISH (Spermidine synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=speE PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.986e-24
Identity = 63/187 (33.69%), Postives = 97/187 (51.87%), Query Frame = 1
Query:  226 AHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLI 681
            A SL++KE L + ++ +Q++ ++E+  +G ++V+DG V LT++D   Y EM++H  L S   PK V                                   ++KYFPEL    +DPR +L   D +++++    G  D II+DS+DPVGPA+ L    F+    KAL PGG+L   +ES  LHT  I
Sbjct:   16 AFSLRMKEKLHEEQTPFQKIEIYETEGFGTLMVIDGCVMLTDRDNFIYHEMMSHPVLYSHSDPKNVLIIGGGDCGTLREVLKHPEVKSATQVDIDERVTRLAEKYFPELCDSNDDPRAKLLFDDGIKYVQDAAPGSLDVIIIDSTDPVGPAEGLFSTAFYRDCIKALGPGGLLVQQSESPLLHTDSI 202          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_CLOPS (Spermidine synthase OS=Clostridium perfringens (strain SM101 / Type A) GN=speE PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23
Identity = 68/215 (31.63%), Postives = 103/215 (47.91%), Query Frame = 1
Query:  211 MWPGEAH------SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHL---------IEDMISICR 705
            +W  E H      S+KV E L+ GKS++Q + VF+S  +G    LDG++ +TEKDE  Y +MI H+P+ + P+ K V                                    ++Y P+ A   +DPRV L   D ++F+R V   +YD IIVDS+DP GP + L  + F+    KAL+  G+L N  ES +   +          I++   +CR
Sbjct:    3 LWYTEEHTDKVRFSIKVDEQLYSGKSDFQRIDVFKSQEFGTFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKNVLVIGAGDGGTVRELTRYETIEKIDMVEIDKLVVDVCREYLPQTANKLDDPRVSLFFEDGLKFVRSV-ENKYDLIIVDSTDPFGPGEGLFTREFYGNCFKALKEDGILVNQHESPYYEEYARGMKRAHKRIKECFPVCR 216          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_CLOPE (Spermidine synthase OS=Clostridium perfringens GN=speE PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23
Identity = 68/215 (31.63%), Postives = 103/215 (47.91%), Query Frame = 1
Query:  211 MWPGEAH------SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHL---------IEDMISICR 705
            +W  E H      S+KV E L+ GKS++Q + VF+S  +G    LDG++ +TEKDE  Y +MI H+P+ + P+ K V                                    ++Y P+ A   +DPRV L   D ++F+R V   +YD IIVDS+DP GP + L  + F+    KAL+  G+L N  ES +   +          I++   +CR
Sbjct:    3 LWYTEEHTDKVRFSIKVDEQLYSGKSDFQRIDVFKSQEFGTFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKNVLVIGAGDGGTVRELTRYETIEKIDMVEIDKLVVDVCREYLPQTANKLDDPRVSLFFEDGLKFVRSV-ENKYDLIIVDSTDPFGPGEGLFTREFYGNCFKALKEDGILVNQHESPYYEEYARGMKRAHKRIKECFPVCR 216          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_CLOP1 (Spermidine synthase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=speE PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23
Identity = 68/215 (31.63%), Postives = 103/215 (47.91%), Query Frame = 1
Query:  211 MWPGEAH------SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHL---------IEDMISICR 705
            +W  E H      S+KV E L+ GKS++Q + VF+S  +G    LDG++ +TEKDE  Y +MI H+P+ + P+ K V                                    ++Y P+ A   +DPRV L   D ++F+R V   +YD IIVDS+DP GP + L  + F+    KAL+  G+L N  ES +   +          I++   +CR
Sbjct:    3 LWYTEEHTDKVRFSIKVDEQLYSGKSDFQRIDVFKSQEFGTFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKNVLVIGAGDGGTVRELTRYETIEKIDMVEIDKLVVDVCREYLPQTANKLDDPRVSLFFEDGLKFVRSV-ENKYDLIIVDSTDPFGPGEGLFTREFYGNCFKALKEDGILVNQHESPYYEEYARGMKRAHKRIKECFPVCR 216          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_METCA (Spermidine synthase OS=Methylococcus capsulatus GN=speE PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.978e-23
Identity = 62/198 (31.31%), Postives = 101/198 (51.01%), Query Frame = 1
Query:  220 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            G A SLK++  L + ++ +Q + ++++ ++GK++V+DG   ++++D   Y EM+ H  L + P+PKTV                                   +++YFPEL     DPR  L   D ++++++ P G  D IIVDS+DPVGPA+ L  + FF    + LR  G+L   +ES   H  LI  M  I R+
Sbjct:   16 GSALSLKIRAKLHEEQTPFQRIEIYDTESFGKLMVIDGCTMVSDRDNFLYHEMMTHPVLYTHPAPKTVWIIGGGDCGSLREVLKHSEVEKAVQIDIDERVTRLAERYFPELCEANGDPRAELLFIDGIQWVKEAPDGCVDVIIVDSTDPVGPAEGLFNEAFFRQCHRCLRTDGILVQQSESPLFHLPLIASMHRIMRQ 213          
The following BLAST results are available for this feature:
BLAST of FC931395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
SPEE_BACHD7.265e-2634.90Spermidine synthase OS=Bacillus halodurans GN=speE... [more]
SPEE_METJA2.761e-2531.90Probable spermidine synthase OS=Methanocaldococcus... [more]
SPEE_ALKOO3.605e-2535.79Spermidine synthase OS=Alkaliphilus oremlandii (st... [more]
SPEE_BACSK6.150e-2531.08Spermidine synthase OS=Bacillus clausii (strain KS... [more]
SPEE_MOOTA8.032e-2533.84Spermidine synthase OS=Moorella thermoacetica (str... [more]
SPEE_THISH3.986e-2433.69Spermidine synthase OS=Thioalkalivibrio sp. (strai... [more]
SPEE_CLOPS1.160e-2331.63Spermidine synthase OS=Clostridium perfringens (st... [more]
SPEE_CLOPE1.160e-2331.63Spermidine synthase OS=Clostridium perfringens GN=... [more]
SPEE_CLOP11.160e-2331.63Spermidine synthase OS=Clostridium perfringens (st... [more]
SPEE_METCA1.978e-2331.31Spermidine synthase OS=Methylococcus capsulatus GN... [more]

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Properties
Property NameValue
Genbank descriptionC34104F08EF PostHarvP1 Citrus clementina cDNA clone C34104F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931395 ID=FC931395; Name=FC931395; organism=Citrus clementina; type=EST; length=712bp
GGAAAAGGTTTGGGATGCCAGAAGACTATGGATGGGAAGGAGAGTAACAA
GAATGGTTCAGCGGGGGCAATCCCTTCTTGTTGCTTGAAAGCAAGGGCTT
CAGCCCCAGAGCTTGATGCCAAATGCCACTCCACTGTTGTTTCTGGGTGG
TTTTCAGAATCTCAGTCTACCTCTGATAAAACTGGCAAAACAATGTACTT
CAACAATCCAATGTGGCCAGGAGAGGCCCATTCATTGAAAGTAAAAGAAA
TTTTATTCAAGGGAAAGTCTGAGTACCAAGAGGTCCTGGTTTTTGAGTCA
TTGGCATATGGGAAAGTGCTTGTTCTTGATGGAATTGTTCAACTAACGGA
GAAAGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTTTGTT
CGATTCCATCTCCGAAAACCGTTTCTAAAAAGTATTTTCCTGAGCTAGCT
GTTGGTTTTGAGGATCCTCGTGTACGACTGCACATTGGTGATGCTGTTGA
ATTCCTACGGCAAGTGCCCAGAGGGGAATATGATGCAATTATTGTTGATT
CATCAGACCCTGTAGGTCCTGCTCAAGAGCTTGTAGAGAAGCCATTTTTT
GACACAATTGCTAAAGCATTAAGGCCTGGAGGTGTCCTCTGTAACATGGC
AGAAAGTATGTGGCTTCATACTCACCTTATTGAGGACATGATTTCTATTT
GTCGTGAAACAT
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