FC931395

Overview
NameFC931395
Unique NameFC931395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig602 contig Ccv1_Contig602:18..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_BACCN (Spermidine synthase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=speE PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.312e-22
Identity = 59/192 (30.73%), Postives = 96/192 (50.00%), Query Frame = 1
Query:  238 KVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            ++   L   ++E+Q++ + E+  +G +L+LDG+V  TEKDE  Y EM+AH+PL + P+P+ V                                   SKKY P +A   +  RV + +GD    + +    EYD I+VDS++PVGPA  L  K F+  I+KAL+  G+     ++ W    LI +++   +E
Sbjct:   18 RINRTLHTEQTEFQKLDMVETEEFGNMLILDGMVMTTEKDEFVYHEMVAHVPLFTHPNPENVLVVGGGDGGVIREVLKHPSVKKATLVEIDGKVIEYSKKYLPSIAGALDHERVEVKVGDGFLHIAE-SENEYDVIMVDSTEPVGPAVNLFTKGFYAGISKALKEDGIFVAQTDNPWFTPELITNVVKDVKE 208          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_XANOR (Spermidine synthase OS=Xanthomonas oryzae pv. oryzae GN=speE PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21
Identity = 63/205 (30.73%), Postives = 98/205 (47.80%), Query Frame = 1
Query:  181 TGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM 690
            T    Y  +    G A   ++   L + +S +Q++ ++++  +GK++++DG V LT +D   Y EMI+H  L + P+PK V                                   S+KYFPEL     D R  L   D V ++   P G  D +IVDS+DPVGPA+ L  K F+++  KAL+  G+L   +ES      LI++M
Sbjct:    3 TNDNWYIEHFQPTGSAIGFRISGKLDEVQSLFQKIEIYQTTDWGKLMLIDGAVMLTSRDNFFYHEMISHPALFTHPTPKRVVIIGGGDCGTLREVLKHPGVESATQCDIDEQVTRMSEKYFPELCDSNHDARAELLFDDGVAYMANCPAGSVDIVIVDSTDPVGPAEGLFNKAFYESCFKALKDDGLLVQQSESPLALLDLIKEM 207          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_XANOP (Spermidine synthase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=speE PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21
Identity = 63/205 (30.73%), Postives = 98/205 (47.80%), Query Frame = 1
Query:  181 TGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM 690
            T    Y  +    G A   ++   L + +S +Q++ ++++  +GK++++DG V LT +D   Y EMI+H  L + P+PK V                                   S+KYFPEL     D R  L   D V ++   P G  D +IVDS+DPVGPA+ L  K F+++  KAL+  G+L   +ES      LI++M
Sbjct:    3 TNDNWYIEHFQPTGSAIGFRISGKLDEVQSLFQKIEIYQTTDWGKLMLIDGAVMLTSRDNFFYHEMISHPALFTHPTPKRVVIIGGGDCGTLREVLKHPGVESATQCDIDEQVTRMSEKYFPELCDSNHDARAELLFDDGVAYMANCPAGSVDIVIVDSTDPVGPAEGLFNKAFYESCFKALKDDGLLVQQSESPLALLDLIKEM 207          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_XANOM (Spermidine synthase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=speE PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21
Identity = 63/205 (30.73%), Postives = 98/205 (47.80%), Query Frame = 1
Query:  181 TGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM 690
            T    Y  +    G A   ++   L + +S +Q++ ++++  +GK++++DG V LT +D   Y EMI+H  L + P+PK V                                   S+KYFPEL     D R  L   D V ++   P G  D +IVDS+DPVGPA+ L  K F+++  KAL+  G+L   +ES      LI++M
Sbjct:    3 TNDNWYIEHFQPTGSAIGFRISGKLDEVQSLFQKIEIYQTTDWGKLMLIDGAVMLTSRDNFFYHEMISHPALFTHPTPKRVVIIGGGDCGTLREVLKHPGVESATQCDIDEQVTRMSEKYFPELCDSNHDARAELLFDDGVAYMANCPAGSVDIVIVDSTDPVGPAEGLFNKAFYESCFKALKDDGLLVQQSESPLALLDLIKEM 207          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_XANCP (Spermidine synthase OS=Xanthomonas campestris pv. campestris GN=speE PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 62/205 (30.24%), Postives = 98/205 (47.80%), Query Frame = 1
Query:  181 TGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM 690
            T    Y  +    G A   ++   L + +S +Q++ ++++  +GK++++DG V LT +D   Y EMI+H  L +  +PK V                                   S+KYFPEL    +D R  L   D V ++   P G  D +IVDS+DPVGPA+ L  K F+++  KAL+  G+L   +ES      LI++M
Sbjct:    3 TNDNWYIEHFQPTGSAIGYRISGKLDEVQSPFQKIEIYQTTDWGKLMIIDGAVMLTSRDNFFYHEMISHPALFTHAAPKRVVIIGGGDCGTLREVLKHPGVESATQCDIDEQVTRMSEKYFPELCDSNDDARAELLFDDGVAYMANCPAGSVDIVIVDSTDPVGPAEGLFNKSFYESCFKALKDDGILVQQSESPLALLDLIKEM 207          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_XANCB (Spermidine synthase OS=Xanthomonas campestris pv. campestris (strain B100) GN=speE PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 62/205 (30.24%), Postives = 98/205 (47.80%), Query Frame = 1
Query:  181 TGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM 690
            T    Y  +    G A   ++   L + +S +Q++ ++++  +GK++++DG V LT +D   Y EMI+H  L +  +PK V                                   S+KYFPEL    +D R  L   D V ++   P G  D +IVDS+DPVGPA+ L  K F+++  KAL+  G+L   +ES      LI++M
Sbjct:    3 TNDNWYIEHFQPTGSAIGYRISGKLDEVQSPFQKIEIYQTTDWGKLMIIDGAVMLTSRDNFFYHEMISHPALFTHAAPKRVVIIGGGDCGTLREVLKHPGVESATQCDIDEQVTRMSEKYFPELCDSNDDARAELLFDDGVAYMANCPAGSVDIVIVDSTDPVGPAEGLFNKSFYESCFKALKDDGILVQQSESPLALLDLIKEM 207          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_XANC8 (Spermidine synthase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=speE PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 62/205 (30.24%), Postives = 98/205 (47.80%), Query Frame = 1
Query:  181 TGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM 690
            T    Y  +    G A   ++   L + +S +Q++ ++++  +GK++++DG V LT +D   Y EMI+H  L +  +PK V                                   S+KYFPEL    +D R  L   D V ++   P G  D +IVDS+DPVGPA+ L  K F+++  KAL+  G+L   +ES      LI++M
Sbjct:    3 TNDNWYIEHFQPTGSAIGYRISGKLDEVQSPFQKIEIYQTTDWGKLMIIDGAVMLTSRDNFFYHEMISHPALFTHAAPKRVVIIGGGDCGTLREVLKHPGVESATQCDIDEQVTRMSEKYFPELCDSNDDARAELLFDDGVAYMANCPAGSVDIVIVDSTDPVGPAEGLFNKSFYESCFKALKDDGILVQQSESPLALLDLIKEM 207          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_BACWK (Spermidine synthase OS=Bacillus weihenstephanensis (strain KBAB4) GN=speE PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 59/192 (30.73%), Postives = 95/192 (49.48%), Query Frame = 1
Query:  238 KVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            ++   L   ++E+Q++ + E+  +G +L+LDG+V  TEKDE  Y EM+AH+PL + P+P+ V                                   SK+Y P +A   +D RV + +GD    + +    EYD I+VDS++PVGPA  L  K F+  I+KAL+  G+     ++ W    LI  +    +E
Sbjct:   18 RINRTLHTEQTEFQKLDMVETEEFGNMLILDGMVMTTEKDEFVYHEMVAHVPLFTHPNPENVLVVGGGDGGVIREVLKHPSVKKATLVEIDGKVIEYSKQYLPSIAGALDDERVEVKVGDGFLHIAE-SENEYDVIMVDSTEPVGPAVNLFTKGFYAGISKALKEDGIFVAQTDNPWFTPELITTVFKDVKE 208          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_NITOC (Spermidine synthase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=speE PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.852e-21
Identity = 56/192 (29.17%), Postives = 93/192 (48.44%), Query Frame = 1
Query:  220 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM 690
            G A SL ++E L    + YQ + ++++  +G+++V+DG + L+ +D   Y EM+AH  L + P P+ V                                   ++KYFPEL    +DPR   H GD + F+ + P    D II+DS+DP+G A+ L +  F+    + L   G+L + +ES  +H  L+  M
Sbjct:   17 GLAFSLAIREKLHAETTPYQYIEIYQTETFGRLMVIDGFIMLSGRDNFFYHEMMAHPVLFTHPHPQRVLIIGGGDCGTLREVLKHDVVEKVQQVEIDERVTRLAEKYFPELCQSNDDPRAHFHFGDGLRFVAEAPANSVDVIIIDSTDPIGSAEGLFQASFYADCQRLLGEKGILVHQSESPLIHLDLLNKM 208          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_EUBR3 (Spermidine synthase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=speE PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.125e-21
Identity = 59/184 (32.07%), Postives = 93/184 (50.54%), Query Frame = 1
Query:  211 MWPGEAHSLKVK------EILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPK-----------------------------------TVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVL 639
            MW  + H++ VK      E LF G+S+YQ++ VF+S  +GK++ LDG +  ++ DE  Y EM+ H+P+   P+ K                                    V +++FPE+A G ED R+ +   D + FLR+    EYD II DS+DP+G  + L  K F+ +  KAL+  G++
Sbjct:    3 MWFSQYHTVNVKLDVRIQEQLFSGQSDYQKIDVFKSYEFGKMVALDGEIVFSDTDEFIYDEMVTHVPMAVHPNAKRILIIGGGDGGVAKELIKYPSVEHIDVVETDKMFVDVCRRFFPEVACGLEDERISMFYDDGLRFLRR-KHDEYDLIINDSTDPLGHTEGLFTKEFYGSCYKALKDDGIM 185          
The following BLAST results are available for this feature:
BLAST of FC931395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
SPEE_BACCN8.312e-2230.73Spermidine synthase OS=Bacillus cereus subsp. cyto... [more]
SPEE_XANOR1.086e-2130.73Spermidine synthase OS=Xanthomonas oryzae pv. oryz... [more]
SPEE_XANOP1.086e-2130.73Spermidine synthase OS=Xanthomonas oryzae pv. oryz... [more]
SPEE_XANOM1.086e-2130.73Spermidine synthase OS=Xanthomonas oryzae pv. oryz... [more]
SPEE_XANCP1.418e-2130.24Spermidine synthase OS=Xanthomonas campestris pv. ... [more]
SPEE_XANCB1.418e-2130.24Spermidine synthase OS=Xanthomonas campestris pv. ... [more]
SPEE_XANC81.418e-2130.24Spermidine synthase OS=Xanthomonas campestris pv. ... [more]
SPEE_BACWK1.418e-2130.73Spermidine synthase OS=Bacillus weihenstephanensis... [more]
SPEE_NITOC1.852e-2129.17Spermidine synthase OS=Nitrosococcus oceani (strai... [more]
SPEE_EUBR34.125e-2132.07Spermidine synthase OS=Eubacterium rectale (strain... [more]

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Properties
Property NameValue
Genbank descriptionC34104F08EF PostHarvP1 Citrus clementina cDNA clone C34104F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931395 ID=FC931395; Name=FC931395; organism=Citrus clementina; type=EST; length=712bp
GGAAAAGGTTTGGGATGCCAGAAGACTATGGATGGGAAGGAGAGTAACAA
GAATGGTTCAGCGGGGGCAATCCCTTCTTGTTGCTTGAAAGCAAGGGCTT
CAGCCCCAGAGCTTGATGCCAAATGCCACTCCACTGTTGTTTCTGGGTGG
TTTTCAGAATCTCAGTCTACCTCTGATAAAACTGGCAAAACAATGTACTT
CAACAATCCAATGTGGCCAGGAGAGGCCCATTCATTGAAAGTAAAAGAAA
TTTTATTCAAGGGAAAGTCTGAGTACCAAGAGGTCCTGGTTTTTGAGTCA
TTGGCATATGGGAAAGTGCTTGTTCTTGATGGAATTGTTCAACTAACGGA
GAAAGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTTTGTT
CGATTCCATCTCCGAAAACCGTTTCTAAAAAGTATTTTCCTGAGCTAGCT
GTTGGTTTTGAGGATCCTCGTGTACGACTGCACATTGGTGATGCTGTTGA
ATTCCTACGGCAAGTGCCCAGAGGGGAATATGATGCAATTATTGTTGATT
CATCAGACCCTGTAGGTCCTGCTCAAGAGCTTGTAGAGAAGCCATTTTTT
GACACAATTGCTAAAGCATTAAGGCCTGGAGGTGTCCTCTGTAACATGGC
AGAAAGTATGTGGCTTCATACTCACCTTATTGAGGACATGATTTCTATTT
GTCGTGAAACAT
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