FC931395

Overview
NameFC931395
Unique NameFC931395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig602 contig Ccv1_Contig602:18..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_BACSU (Spermidine synthase OS=Bacillus subtilis GN=speE PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21
Identity = 59/188 (31.38%), Postives = 95/188 (50.53%), Query Frame = 1
Query:  232 SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM 690
            ++KV + L   ++E+Q + + E+  +G +L LDG+V  +EKDE  Y EM+AH+PL + P+P+ V                                   SKK+ P +A   +DPRV + + D    + +    +YD I+VDS++PVGPA  L  K F+  IAKAL+  G+     ++ W    LI ++
Sbjct:   17 TMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK-SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNV 203          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_BACC1 (Spermidine synthase OS=Bacillus cereus (strain ATCC 10987) GN=speE PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21
Identity = 58/192 (30.21%), Postives = 95/192 (49.48%), Query Frame = 1
Query:  238 KVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            ++   L   ++E+Q++ + E+  +G +L+LDG+V  TEKDE  Y EM+AH+PL + P+P+ V                                   SK+Y P +A   ++ RV + +GD    + +    EYD I+VDS++PVGPA  L  K F+  I+KAL+  G+     ++ W    LI  +    +E
Sbjct:   18 RINRTLHTEQTEFQKLDMVETEEFGNMLILDGMVMTTEKDEFVYHEMVAHVPLFTHPNPENVLVVGGGDGGVIREVLKHPSVKKATLVEIDGKVIEYSKQYLPSIAGALDNERVEVKVGDGFLHIAE-SENEYDVIMVDSTEPVGPAVNLFTKGFYAGISKALKEDGIFVAQTDNPWFTPELITTVFKDVKE 208          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE1_BACCR (Spermidine synthase 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=speE1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21
Identity = 58/192 (30.21%), Postives = 95/192 (49.48%), Query Frame = 1
Query:  238 KVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            ++   L   ++E+Q++ + E+  +G +L+LDG+V  TEKDE  Y EM+AH+PL + P+P+ V                                   SK+Y P +A   ++ RV + +GD    + +    EYD I+VDS++PVGPA  L  K F+  I+KAL+  G+     ++ W    LI  +    +E
Sbjct:   18 RINRTLHTEQTEFQKLDMVETEEFGNMLILDGMVMTTEKDEFVYHEMVAHVPLFTHPNPENVLIVGGGDGGVIREVLKHPSVKKATLVEIDGKVIEYSKQYLPSIAGALDNERVEVKVGDGFLHIAE-SENEYDVIMVDSTEPVGPAVNLFTKGFYAGISKALKEDGIFVAQTDNPWFTPELITTVFKDVKE 208          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE1_BACAN (Spermidine synthase 1 OS=Bacillus anthracis GN=speE1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21
Identity = 58/192 (30.21%), Postives = 95/192 (49.48%), Query Frame = 1
Query:  238 KVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            ++   L   ++E+Q++ + E+  +G +L+LDG+V  TEKDE  Y EM+AH+PL + P+P+ V                                   SK+Y P +A   ++ RV + +GD    + +    EYD I+VDS++PVGPA  L  K F+  I+KAL+  G+     ++ W    LI  +    +E
Sbjct:   18 RINRTLHTEQTEFQKLDMVETEEFGNMLILDGMVMTTEKDEFVYHEMVAHVPLFTHPNPENVLVVGGGDGGVIREVLKHPSVKKATLVEIDGKVIEYSKQYLPSIAGALDNERVEVKVGDGFLHIAE-SENEYDVIMVDSTEPVGPAVNLFTKGFYAGISKALKEDGIFVAQTDNPWFTPELITTVFKDVKE 208          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_XANAC (Spermidine synthase OS=Xanthomonas axonopodis pv. citri GN=speE PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.036e-21
Identity = 60/192 (31.25%), Postives = 93/192 (48.44%), Query Frame = 1
Query:  220 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM 690
            G A   ++   L + +S +Q++ ++++  +GK++++DG V LT +D   Y EMI+H  L + P+PK V                                   S+KYFPEL     D R  L   D V ++     G  D +IVDS+DPVGPA+ L  K F+++  KAL+  G+L   +ES      LI +M
Sbjct:   16 GSAIGFRISGKLDEVQSPFQKIEIYQTTDWGKLMLIDGAVMLTSRDNFFYHEMISHPALFTHPAPKRVVIIGGGDCGTLREVLKHPGVESATQCDIDEQVTRMSEKYFPELCDSNHDARAELLFDDGVAYMANCQAGSVDIVIVDSTDPVGPAEGLFNKAFYESCFKALKDDGILVQQSESPLALLDLINEM 207          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_ALHEH (Spermidine synthase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=speE PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.036e-21
Identity = 60/189 (31.75%), Postives = 93/189 (49.21%), Query Frame = 1
Query:  220 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVS-----------------------------------KKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLI 681
            G A SL+V+E L + ++ +Q + V+E+ A+G++LV+DG V LT +D   Y EM++H  L + P P+ V+                                   ++YFPEL    +DPR  L   D V +++  P G  D +IVDS+DPVG A+ L    F   + + L   G++   +ES  LH   I
Sbjct:   16 GMAFSLRVREKLHEERTAFQHIEVYETEAWGRLLVIDGCVMLTSRDNFVYHEMMSHPALFTHPDPRRVAIIGGGDCGMLREVLKHPGIESVVQVDIDAGVTRAAERYFPELTEANDDPRATLLFDDGVAWIQDQPAGSLDVVIVDSTDPVGVAEGLFGPGFLGQVYRVLGDQGLMVQQSESPILHRDTI 204          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_CLOBB (Spermidine synthase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=speE PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.190e-21
Identity = 63/190 (33.16%), Postives = 90/190 (47.37%), Query Frame = 1
Query:  211 MWPGEAH------SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 657
            +W  E H      S+KV   L+  +S++Q + + ES  +GK   LDG++ +TEKDE  Y +MI H+P+ + P+ K V                                    KKY P+ A   E+ RV +   D ++F+R     EYD IIVDS+DP GP + L  K F+    KAL   G+L N  ES
Sbjct:    3 LWYTEKHTEYVKFSIKVDRELYTEQSKFQRIDILESKEFGKFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKNVLVIGAGDGGTIRELTRYKTIEKIDMVEIDERVVEVCKKYLPKTAGKLEEERVNIVYEDGLKFVRN-KENEYDLIIVDSTDPFGPGEGLFTKEFYGNCYKALSEDGILVNQHES 191          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_CLOB8 (Spermidine synthase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=speE PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 61/190 (32.11%), Postives = 92/190 (48.42%), Query Frame = 1
Query:  211 MWPGEAH------SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 657
            +W  E H      S+KV++ +   K+E+Q + V E+  +G+   LDG++ +TEKDE  Y +MI H+P+ + P+ K V                                    ++YFP  +   +D RV +   D ++F+R     EYD IIVDS+DP GP + L  K F+    KALR  G+L N  ES
Sbjct:    3 LWYTEQHTENVRFSIKVEKEIHTEKTEFQRIDVLEAKEFGRFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKNVLVIGAGDGGTIRELTRYSTVEKIDMVEIDKRVVDICREYFPLTSCKLDDKRVNVFYEDGLKFIRD-KEDEYDLIIVDSTDPFGPGEGLFTKEFYGNCYKALREDGILVNQHES 191          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_XYLFT (Spermidine synthase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=speE PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.047e-20
Identity = 61/205 (29.76%), Postives = 97/205 (47.32%), Query Frame = 1
Query:  181 TGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM 690
            T  T +  +    G A   +V   L + +S +Q++ ++ S  +GK++V+DG + LT +D   Y EMI+H  L +  +PK V                                   ++K+FPEL     DPR  L   D V ++   P    D IIVDS+DPVGPA+ L  + F+++  +AL+  G+L   +ES      LI++M
Sbjct:    3 TNDTWFTEHFQTTGSAIGFRVTGKLDEVQSPFQKIEIYNSTDWGKLMVIDGALMLTSRDNFLYHEMISHPALFTHTAPKCVVIIGGGDCGTLREVLKHPDIEQVTQCDIDEQVTRMAEKHFPELCTSNNDPRATLLFSDGVAYMADCPTNSVDVIIVDSTDPVGPAKGLFNRTFYESCFRALKNDGLLIQQSESPLALLELIKEM 207          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_XYLF2 (Spermidine synthase OS=Xylella fastidiosa (strain M23) GN=speE PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.047e-20
Identity = 61/205 (29.76%), Postives = 97/205 (47.32%), Query Frame = 1
Query:  181 TGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM 690
            T  T +  +    G A   +V   L + +S +Q++ ++ S  +GK++V+DG + LT +D   Y EMI+H  L +  +PK V                                   ++K+FPEL     DPR  L   D V ++   P    D IIVDS+DPVGPA+ L  + F+++  +AL+  G+L   +ES      LI++M
Sbjct:    3 TNDTWFTEHFQTTGSAIGFRVTGKLDEVQSPFQKIEIYNSTDWGKLMVIDGALMLTSRDNFLYHEMISHPALFTHTAPKCVVIIGGGDCGTLREVLKHPDIEQVTQCDIDEQVTRMAEKHFPELCTSNNDPRATLLFSDGVAYMADCPTNSVDVIIVDSTDPVGPAKGLFNRTFYESCFRALKNDGLLIQQSESPLALLELIKEM 207          
The following BLAST results are available for this feature:
BLAST of FC931395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
SPEE_BACSU5.388e-2131.38Spermidine synthase OS=Bacillus subtilis GN=speE P... [more]
SPEE_BACC15.388e-2130.21Spermidine synthase OS=Bacillus cereus (strain ATC... [more]
SPEE1_BACCR5.388e-2130.21Spermidine synthase 1 OS=Bacillus cereus (strain A... [more]
SPEE1_BACAN5.388e-2130.21Spermidine synthase 1 OS=Bacillus anthracis GN=spe... [more]
SPEE_XANAC7.036e-2131.25Spermidine synthase OS=Xanthomonas axonopodis pv. ... [more]
SPEE_ALHEH7.036e-2131.75Spermidine synthase OS=Alkalilimnicola ehrlichei (... [more]
SPEE_CLOBB9.190e-2133.16Spermidine synthase OS=Clostridium botulinum (stra... [more]
SPEE_CLOB81.200e-2032.11Spermidine synthase OS=Clostridium beijerinckii (s... [more]
SPEE_XYLFT2.047e-2029.76Spermidine synthase OS=Xylella fastidiosa (strain ... [more]
SPEE_XYLF22.047e-2029.76Spermidine synthase OS=Xylella fastidiosa (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC34104F08EF PostHarvP1 Citrus clementina cDNA clone C34104F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931395 ID=FC931395; Name=FC931395; organism=Citrus clementina; type=EST; length=712bp
GGAAAAGGTTTGGGATGCCAGAAGACTATGGATGGGAAGGAGAGTAACAA
GAATGGTTCAGCGGGGGCAATCCCTTCTTGTTGCTTGAAAGCAAGGGCTT
CAGCCCCAGAGCTTGATGCCAAATGCCACTCCACTGTTGTTTCTGGGTGG
TTTTCAGAATCTCAGTCTACCTCTGATAAAACTGGCAAAACAATGTACTT
CAACAATCCAATGTGGCCAGGAGAGGCCCATTCATTGAAAGTAAAAGAAA
TTTTATTCAAGGGAAAGTCTGAGTACCAAGAGGTCCTGGTTTTTGAGTCA
TTGGCATATGGGAAAGTGCTTGTTCTTGATGGAATTGTTCAACTAACGGA
GAAAGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTTTGTT
CGATTCCATCTCCGAAAACCGTTTCTAAAAAGTATTTTCCTGAGCTAGCT
GTTGGTTTTGAGGATCCTCGTGTACGACTGCACATTGGTGATGCTGTTGA
ATTCCTACGGCAAGTGCCCAGAGGGGAATATGATGCAATTATTGTTGATT
CATCAGACCCTGTAGGTCCTGCTCAAGAGCTTGTAGAGAAGCCATTTTTT
GACACAATTGCTAAAGCATTAAGGCCTGGAGGTGTCCTCTGTAACATGGC
AGAAAGTATGTGGCTTCATACTCACCTTATTGAGGACATGATTTCTATTT
GTCGTGAAACAT
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