FC931395

Overview
NameFC931395
Unique NameFC931395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig602 contig Ccv1_Contig602:18..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_KLEP3 (Spermidine synthase OS=Klebsiella pneumoniae (strain 342) GN=speE PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.047e-20
Identity = 56/186 (30.11%), Postives = 92/186 (49.46%), Query Frame = 1
Query:  202 NNPMWPGEAHS-----LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 636
            +NP+W    H        V  +L+  K+++Q++++F++ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +  + K V                                    ++Y P  + G ++DPR  L I D V F+ Q  +  +D II D +DP+GP + L    F++   + L PGGV
Sbjct:    3 DNPLWHETLHDHFGQYFSVDNVLYHEKTDHQDLIIFDNRAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGNAKHVLIIGGGDGAMLREVSRHRSIETITMVEIDAGVVSFCRQYLPNHSAGAYDDPRFTLVIDDGVNFVNQTTQ-TFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGV 187          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_STRMK (Spermidine synthase OS=Stenotrophomonas maltophilia (strain K279a) GN=speE PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.674e-20
Identity = 57/192 (29.69%), Postives = 92/192 (47.92%), Query Frame = 1
Query:  220 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM 690
            G A   ++   L + +S +Q++ +F++  +G ++ +DG + LT KD   Y EMI+H  L +  +PK V                                   ++K+FPEL    +D R  L   D V ++   P G  D +IVDS+DPVGP + L  K F+++  KAL+  G+L   +ES  +   LI +M
Sbjct:   16 GSAIGYRITGKLDEVQSPFQKIEIFQTTDWGNLMTIDGAIMLTSKDNFFYHEMISHPVLFTHAAPKRVVIIGGGDCGTLREVLKHTGVESVTQCDIDEQVTVMARKHFPELCDSNDDARAELLFDDGVAYMANCPAGSVDVVIVDSTDPVGPGEGLFNKAFYESCFKALKDDGILVQQSESPLMQLELINEM 207          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_CLOTE (Spermidine synthase OS=Clostridium tetani GN=speE PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.561e-20
Identity = 57/176 (32.39%), Postives = 91/176 (51.70%), Query Frame = 1
Query:  238 KVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELA-VGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 657
            K+KE L + K+EYQ++ + ++ A G++LVLDGIVQ + KDE  Y EMI H+PL + P+PK V                                    KK+ PE++    ED R  + IGD ++++ +  + E+D +I+DS+DP G A+ L    F+  I++ L   G+     E+
Sbjct:   18 KIKETLVRKKTEYQDLAIVDTYALGRMLVLDGIVQTSIKDEYVYHEMITHIPLYTHPNPKKVLVVGGGDGGTIREILKHPSVEKAVLCEIDEEVVKECKKHLPEISNNALEDSRCEVFIGDGIKYVNE-HKNEFDVVIIDSTDPFGAAEGLFGGSFYGKISECLTEDGIFVAQTET 192          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_XYLFM (Spermidine synthase OS=Xylella fastidiosa (strain M12) GN=speE PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.957e-20
Identity = 58/192 (30.21%), Postives = 93/192 (48.44%), Query Frame = 1
Query:  220 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM 690
            G A   +V   L + +S +Q++ ++ S  +GK++V+DG + LT +D   Y EMI+H  L +  +PK V                                   ++K+FPEL     DPR  L   D V ++   P    D IIVDS+DP+GPA+ L  + F+++  +AL+  G+L   +ES      LI++M
Sbjct:   16 GSAIGFRVTGKLDEVQSPFQKIEIYNSTDWGKLMVIDGALMLTSRDNFIYHEMISHPALFTHTAPKCVVIIGGGDCGTLREVLKHPDIEQVTQCDIDEQVTRMAEKHFPELCTSNNDPRATLLFSDGVAYMADCPTNSVDVIIVDSTDPIGPAKGLFNRTFYESCFRALKNDGLLIQQSESPLALLELIKEM 207          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_XYLFA (Spermidine synthase OS=Xylella fastidiosa GN=speE PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.957e-20
Identity = 58/192 (30.21%), Postives = 93/192 (48.44%), Query Frame = 1
Query:  220 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM 690
            G A   ++   L + +S +Q++ ++ S  +GK++V+DG + LT +D   Y EMI+H  L +  +PK V                                   ++K+FPEL     DPR  L   D V ++   P    D IIVDS+DPVGPA+ L  + F+++  +AL+  G+L   +ES      LI++M
Sbjct:   16 GSAIGFRITGKLDEVQSPFQKIEIYNSTDWGKLMVIDGALMLTSRDNFLYHEMISHPALFTHTAPKCVVIIGGGDCGTLREVLKHPDIEQVTQCDIDEQVTRMAEKHFPELCTSNNDPRATLLFSDGVAYMTDCPTNSVDVIIVDSTDPVGPAKGLFNRTFYESCFRALKNDGLLVQQSESPLALLELIKEM 207          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_KLEP7 (Spermidine synthase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=speE PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.957e-20
Identity = 55/186 (29.57%), Postives = 91/186 (48.92%), Query Frame = 1
Query:  202 NNPMWPGEAHS-----LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 636
            +NP+W    H        V  +L+  K+++Q++++F++ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +  + K V                                    ++Y P    G ++DPR  L I D V F+ Q  +  +D II D +DP+GP + L    F++   + L PGG+
Sbjct:    3 DNPLWHETLHDHFGQYFSVDNVLYHEKTDHQDLIIFDNRAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGNAKHVLIIGGGDGAMLREVSRHRSIETITMVEIDAGVVSFCRQYLPNHNAGAYDDPRFTLVIDDGVNFVNQTTQ-TFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGI 187          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_THEVO (Probable spermidine synthase OS=Thermoplasma volcanium GN=speE PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.780e-20
Identity = 61/209 (29.19%), Postives = 99/209 (47.37%), Query Frame = 1
Query:  136 VVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKT-----------------------------------VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 657
            ++  WFSE  S + +                 S +V + L   K++YQ + +F++  +GK+L +DG VQLTE+DE  Y E+I  +P     +P                                     VSK++FP+L+  F D RV L I D ++++R+    ++D +I+DS+DP GPA+ L    F+  I K L  GGV+ + + S
Sbjct:    3 LIENWFSERYSDNLQL----------------SFRVSDQLLSIKTDYQRIDLFDTYDFGKLLAIDGTVQLTERDEYIYHELITMIPYHMTKNPPQSALVIGGGDGGAARRLLDLGLNKIVNVEIDGQVVEVSKRFFPDLSSAFTDKRVNLIIDDGIKYVRKCNE-KFDLVIIDSTDPEGPAEGLFSMEFYSDITKILSDGGVIVSQSGS 194          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_CLOBA (Spermidine synthase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=speE PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.780e-20
Identity = 60/190 (31.58%), Postives = 90/190 (47.37%), Query Frame = 1
Query:  211 MWPGEAH------SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 657
            +W  E H      S++V   L+  +S++Q + + ES  +G+   LDG++ +TEKDE  Y +MI H+P+ + P+ K V                                    KKY P+ A   E+ RV +   D ++F+R     +YD IIVDS+DP GP + L  K F+    KAL   G+L N  ES
Sbjct:    3 LWYTEKHTEDVKFSIRVDRELYTEQSKFQRIDILESKEFGRFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKKVLVIGAGDGGTIRELTRYKTIEKIDMVEIDESVVEACKKYLPKTACKLEEERVNIVYEDGLKFVRN-KENDYDLIIVDSTDPFGPGEGLFTKEFYGNCYKALSEDGILVNQHES 191          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_STRM5 (Spermidine synthase OS=Stenotrophomonas maltophilia (strain R551-3) GN=speE PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.327e-19
Identity = 57/192 (29.69%), Postives = 90/192 (46.88%), Query Frame = 1
Query:  220 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM 690
            G A   ++   L + +S +Q++ +F +  +G ++ +DG + LT KD   Y EMI+H  L +  +PK V                                   ++K+FPEL    +D R  L   D V ++   P G  D +IVDS+DPVGP + L  K F+ +  KAL+  G+L   +ES  +   LI +M
Sbjct:   16 GSAIGYRITGKLDEVQSPFQKIEIFRTTDWGNLMTIDGAIMLTSKDNFFYHEMISHPVLFTHAAPKRVVIIGGGDCGTLREVLKHKGVESVTQCDIDEQVTVMARKHFPELCDSNDDARAELLFDDGVAYMANCPAGSVDVVIVDSTDPVGPGEGLFNKAFYASCFKALKDDGILVQQSESPLMQLELINEM 207          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_STRR6 (Spermidine synthase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=speE PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.733e-19
Identity = 55/184 (29.89%), Postives = 91/184 (49.46%), Query Frame = 1
Query:  211 MWPGEAH------SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPK-----------------------------------TVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVL 639
            +W  E H      SL+  + L+ GKSE+Q++ V ++ A+GK+L+L+G V  ++ D+  Y EM  H+P+   P+PK                                    V ++YFP+ A G +DPRV ++  + + FLR     +YD II D++DP G  + L  K F+    +AL+  G++
Sbjct:    3 LWFSEVHTPDVKLSLRTAKQLYAGKSEWQDIEVLDTPAFGKILILNGHVLFSDADDFVYNEMTVHVPMAVHPNPKKVLVIGGGDGGVAQVLTLYPELEQIDIVEPDEMLVEVCREYFPDFAAGLDDPRVTIYYQNGLRFLRNC-EDDYDIIINDATDPFGHTEGLFTKEFYGNSYRALKEDGIM 185          
The following BLAST results are available for this feature:
BLAST of FC931395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
SPEE_KLEP32.047e-2030.11Spermidine synthase OS=Klebsiella pneumoniae (stra... [more]
SPEE_STRMK2.674e-2029.69Spermidine synthase OS=Stenotrophomonas maltophili... [more]
SPEE_CLOTE4.561e-2032.39Spermidine synthase OS=Clostridium tetani GN=speE ... [more]
SPEE_XYLFM5.957e-2030.21Spermidine synthase OS=Xylella fastidiosa (strain ... [more]
SPEE_XYLFA5.957e-2030.21Spermidine synthase OS=Xylella fastidiosa GN=speE ... [more]
SPEE_KLEP75.957e-2029.57Spermidine synthase OS=Klebsiella pneumoniae subsp... [more]
SPEE_THEVO7.780e-2029.19Probable spermidine synthase OS=Thermoplasma volca... [more]
SPEE_CLOBA7.780e-2031.58Spermidine synthase OS=Clostridium botulinum (stra... [more]
SPEE_STRM51.327e-1929.69Spermidine synthase OS=Stenotrophomonas maltophili... [more]
SPEE_STRR61.733e-1929.89Spermidine synthase OS=Streptococcus pneumoniae (s... [more]

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Properties
Property NameValue
Genbank descriptionC34104F08EF PostHarvP1 Citrus clementina cDNA clone C34104F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931395 ID=FC931395; Name=FC931395; organism=Citrus clementina; type=EST; length=712bp
GGAAAAGGTTTGGGATGCCAGAAGACTATGGATGGGAAGGAGAGTAACAA
GAATGGTTCAGCGGGGGCAATCCCTTCTTGTTGCTTGAAAGCAAGGGCTT
CAGCCCCAGAGCTTGATGCCAAATGCCACTCCACTGTTGTTTCTGGGTGG
TTTTCAGAATCTCAGTCTACCTCTGATAAAACTGGCAAAACAATGTACTT
CAACAATCCAATGTGGCCAGGAGAGGCCCATTCATTGAAAGTAAAAGAAA
TTTTATTCAAGGGAAAGTCTGAGTACCAAGAGGTCCTGGTTTTTGAGTCA
TTGGCATATGGGAAAGTGCTTGTTCTTGATGGAATTGTTCAACTAACGGA
GAAAGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTTTGTT
CGATTCCATCTCCGAAAACCGTTTCTAAAAAGTATTTTCCTGAGCTAGCT
GTTGGTTTTGAGGATCCTCGTGTACGACTGCACATTGGTGATGCTGTTGA
ATTCCTACGGCAAGTGCCCAGAGGGGAATATGATGCAATTATTGTTGATT
CATCAGACCCTGTAGGTCCTGCTCAAGAGCTTGTAGAGAAGCCATTTTTT
GACACAATTGCTAAAGCATTAAGGCCTGGAGGTGTCCTCTGTAACATGGC
AGAAAGTATGTGGCTTCATACTCACCTTATTGAGGACATGATTTCTATTT
GTCGTGAAACAT
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