FC931395

Overview
NameFC931395
Unique NameFC931395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig602 contig Ccv1_Contig602:18..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_STRPN (Spermidine synthase OS=Streptococcus pneumoniae GN=speE PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.733e-19
Identity = 55/184 (29.89%), Postives = 91/184 (49.46%), Query Frame = 1
Query:  211 MWPGEAH------SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPK-----------------------------------TVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVL 639
            +W  E H      SL+  + L+ GKSE+Q++ V ++ A+GK+L+L+G V  ++ D+  Y EM  H+P+   P+PK                                    V ++YFP+ A G +DPRV ++  + + FLR     +YD II D++DP G  + L  K F+    +AL+  G++
Sbjct:    3 LWFSEVHTPDVKLSLRTAKQLYAGKSEWQDIEVLDTPAFGKILILNGHVLFSDADDFVYNEMTVHVPMAVHPNPKKVLVIGGGDGGVAQVLTLYPELEQIDIVEPDEMLVEVCREYFPDFAAGLDDPRVTIYYQNGLRFLRNC-EDDYDIIINDATDPFGHTEGLFTKEFYGNSYRALKEDGIM 185          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_YERPP (Spermidine synthase OS=Yersinia pestis (strain Pestoides F) GN=speE PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 53/168 (31.55%), Postives = 87/168 (51.79%), Query Frame = 1
Query:  241 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 636
            V+ +LF+ K+E+Q++++FE+   G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K V                                    ++Y P  + G ++DPR +L I D V F+ Q    ++D II D +DP+GP + L    F++  A++L  GG+
Sbjct:   21 VENVLFREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQYLPNHSAGAYDDPRFKLVIDDGVNFVNQTTE-KFDVIISDCTDPIGPGESLFTSVFYEGCARSLNEGGI 187          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_YERPN (Spermidine synthase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=speE PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 53/168 (31.55%), Postives = 87/168 (51.79%), Query Frame = 1
Query:  241 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 636
            V+ +LF+ K+E+Q++++FE+   G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K V                                    ++Y P  + G ++DPR +L I D V F+ Q    ++D II D +DP+GP + L    F++  A++L  GG+
Sbjct:   21 VENVLFREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQYLPNHSAGAYDDPRFKLVIDDGVNFVNQTTE-KFDVIISDCTDPIGPGESLFTSVFYEGCARSLNEGGI 187          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_YERPG (Spermidine synthase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=speE PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 53/168 (31.55%), Postives = 87/168 (51.79%), Query Frame = 1
Query:  241 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 636
            V+ +LF+ K+E+Q++++FE+   G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K V                                    ++Y P  + G ++DPR +L I D V F+ Q    ++D II D +DP+GP + L    F++  A++L  GG+
Sbjct:   21 VENVLFREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQYLPNHSAGAYDDPRFKLVIDDGVNFVNQTTE-KFDVIISDCTDPIGPGESLFTSVFYEGCARSLNEGGI 187          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_YERPE (Spermidine synthase OS=Yersinia pestis GN=speE PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 53/168 (31.55%), Postives = 87/168 (51.79%), Query Frame = 1
Query:  241 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 636
            V+ +LF+ K+E+Q++++FE+   G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K V                                    ++Y P  + G ++DPR +L I D V F+ Q    ++D II D +DP+GP + L    F++  A++L  GG+
Sbjct:   21 VENVLFREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQYLPNHSAGAYDDPRFKLVIDDGVNFVNQTTE-KFDVIISDCTDPIGPGESLFTSVFYEGCARSLNEGGI 187          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_YERPA (Spermidine synthase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=speE PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 53/168 (31.55%), Postives = 87/168 (51.79%), Query Frame = 1
Query:  241 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 636
            V+ +LF+ K+E+Q++++FE+   G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K V                                    ++Y P  + G ++DPR +L I D V F+ Q    ++D II D +DP+GP + L    F++  A++L  GG+
Sbjct:   21 VENVLFREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQYLPNHSAGAYDDPRFKLVIDDGVNFVNQTTE-KFDVIISDCTDPIGPGESLFTSVFYEGCARSLNEGGI 187          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_THEON (Probable spermidine synthase OS=Thermococcus onnurineus (strain NA1) GN=speE PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 63/191 (32.98%), Postives = 94/191 (49.21%), Query Frame = 1
Query:  220 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSP--------------------KTVSKKYFPELAV---------------GFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIED 687
            G     +VKE LF+ +++YQ + ++E+  +GK+LVLDG VQL E  E +Y E + H  + + P+P                    KTV K    E+                  FEDPR  L + D VE+L+     ++D IIVDS+DPVGPA+ L  + FF    + L   G+    A S++L T+ + D
Sbjct:   17 GYGVGFRVKERLFETQTKYQRLELYETEGFGKLLVLDGTVQLVEMGEESYHEPLVHPVMLAHPNPRRVLIIGGGDGGTLREVLRHKTVEKAIMVEIDEMVIEVSRIYMNVARGAFEDPRAELIVSDGVEYLKNTDE-KFDVIIVDSTDPVGPAKMLFSEGFFRNAYEKLNDNGLYITQAGSVYLFTNELLD 206          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_THEAC (Probable spermidine synthase OS=Thermoplasma acidophilum GN=speE PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 63/226 (27.88%), Postives = 103/226 (45.58%), Query Frame = 1
Query:  136 VVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKT-----------------------------------VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            ++  WFSE  S + +                 S +V + L   K++YQ + +F++  +GK+L +DG VQLTE+DE  Y E+I  +P    P P                                     VSK++FP L+  F D  V+L I D +++++     ++D II+DS+DP GPA+ L  K F++   K +  G V+ + + S +     I+   S  RE
Sbjct:    3 LIENWFSERYSDNLQL----------------SFRVSDQLLSIKTDYQRIDLFDTYDFGKLLAIDGTVQLTERDEFIYHELITMVPYHLTPRPPENALIIGGGDGGAARRLIDLGLKHIVNVEIDDQVVEVSKRFFPSLSSAFNDSHVKLLIQDGIKYVKNTSE-KFDLIIIDSTDPEGPAEGLFSKDFYNDTRKIMNEGAVIVSQSGSPFYQPKAIKLAYSGMRE 211          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_ERWCT (Spermidine synthase OS=Erwinia carotovora subsp. atroseptica GN=speE PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 54/168 (32.14%), Postives = 86/168 (51.19%), Query Frame = 1
Query:  241 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 636
            V  +L+  K+++Q++++FE+ A G+V+ LDG+VQ TE+DE  Y EM+ H+PL S  + K V                                    ++Y P  + G ++DPR  L I D V F+RQ    ++D II D +DP+GP + L    F+   A++L  GG+
Sbjct:   21 VDRVLYHEKTDHQDLIIFENDALGRVMALDGVVQTTERDEFIYHEMLTHVPLLSHGNAKRVLIIGGGDGGMLREVSRHHGVEQITMVEIDAGVVEFCRQYLPNHSAGSYDDPRFNLVIDDGVNFVRQCSE-KFDVIISDCTDPIGPGESLFTSDFYQGCARSLNEGGI 187          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_YERE8 (Spermidine synthase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=speE PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.861e-19
Identity = 52/168 (30.95%), Postives = 87/168 (51.79%), Query Frame = 1
Query:  241 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 636
            V+ +L++ K+E+Q++++FE+   G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K V                                    ++Y P  + G ++DPR +L I D V F+ Q    ++D II D +DP+GP + L    F++  A++L  GG+
Sbjct:   21 VENVLYREKTEHQDLVIFENPVLGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQYLPNHSAGAYDDPRFKLVIDDGVNFVNQTTE-KFDVIISDCTDPIGPGESLFTSAFYEGCARSLNEGGI 187          
The following BLAST results are available for this feature:
BLAST of FC931395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
SPEE_STRPN1.733e-1929.89Spermidine synthase OS=Streptococcus pneumoniae GN... [more]
SPEE_YERPP2.956e-1931.55Spermidine synthase OS=Yersinia pestis (strain Pes... [more]
SPEE_YERPN2.956e-1931.55Spermidine synthase OS=Yersinia pestis bv. Antiqua... [more]
SPEE_YERPG2.956e-1931.55Spermidine synthase OS=Yersinia pestis bv. Antiqua... [more]
SPEE_YERPE2.956e-1931.55Spermidine synthase OS=Yersinia pestis GN=speE PE=... [more]
SPEE_YERPA2.956e-1931.55Spermidine synthase OS=Yersinia pestis bv. Antiqua... [more]
SPEE_THEON2.956e-1932.98Probable spermidine synthase OS=Thermococcus onnur... [more]
SPEE_THEAC2.956e-1927.88Probable spermidine synthase OS=Thermoplasma acido... [more]
SPEE_ERWCT2.956e-1932.14Spermidine synthase OS=Erwinia carotovora subsp. a... [more]
SPEE_YERE83.861e-1930.95Spermidine synthase OS=Yersinia enterocolitica ser... [more]

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Properties
Property NameValue
Genbank descriptionC34104F08EF PostHarvP1 Citrus clementina cDNA clone C34104F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931395 ID=FC931395; Name=FC931395; organism=Citrus clementina; type=EST; length=712bp
GGAAAAGGTTTGGGATGCCAGAAGACTATGGATGGGAAGGAGAGTAACAA
GAATGGTTCAGCGGGGGCAATCCCTTCTTGTTGCTTGAAAGCAAGGGCTT
CAGCCCCAGAGCTTGATGCCAAATGCCACTCCACTGTTGTTTCTGGGTGG
TTTTCAGAATCTCAGTCTACCTCTGATAAAACTGGCAAAACAATGTACTT
CAACAATCCAATGTGGCCAGGAGAGGCCCATTCATTGAAAGTAAAAGAAA
TTTTATTCAAGGGAAAGTCTGAGTACCAAGAGGTCCTGGTTTTTGAGTCA
TTGGCATATGGGAAAGTGCTTGTTCTTGATGGAATTGTTCAACTAACGGA
GAAAGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTTTGTT
CGATTCCATCTCCGAAAACCGTTTCTAAAAAGTATTTTCCTGAGCTAGCT
GTTGGTTTTGAGGATCCTCGTGTACGACTGCACATTGGTGATGCTGTTGA
ATTCCTACGGCAAGTGCCCAGAGGGGAATATGATGCAATTATTGTTGATT
CATCAGACCCTGTAGGTCCTGCTCAAGAGCTTGTAGAGAAGCCATTTTTT
GACACAATTGCTAAAGCATTAAGGCCTGGAGGTGTCCTCTGTAACATGGC
AGAAAGTATGTGGCTTCATACTCACCTTATTGAGGACATGATTTCTATTT
GTCGTGAAACAT
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