FC931395

Overview
NameFC931395
Unique NameFC931395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig602 contig Ccv1_Contig602:18..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_ESCF3 (Spermidine synthase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=speE PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.861e-19
Identity = 52/168 (30.95%), Postives = 85/168 (50.60%), Query Frame = 1
Query:  241 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 636
            V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K V                                    ++Y P    G ++DPR +L I D V F+ Q  +  +D II D +DP+GP + L    F++   + L PGG+
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKDVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQ-TFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGI 187          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_PECCP (Spermidine synthase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=speE PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.043e-19
Identity = 54/168 (32.14%), Postives = 85/168 (50.60%), Query Frame = 1
Query:  241 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 636
            V  +L+  K+++Q++++FE+ A G+V+ LDG+VQ TE+DE  Y EM+ H+PL S  + K V                                    ++Y P  + G ++DPR  L I D V F+RQ    ++D II D +DP+GP + L    F+   A+ L  GG+
Sbjct:   21 VDRVLYHEKTDHQDLIIFENDALGRVMALDGVVQTTERDEFIYHEMLTHVPLLSHGNAKRVLIIGGGDGGMLREVSRHHGVEHITMVEIDAGVVEFCRQYLPNHSAGSYDDPRFNLVIDDGVNFVRQC-SDKFDVIISDCTDPIGPGESLFTSDFYQGCARCLNEGGI 187          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_EUBE2 (Spermidine synthase OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=speE PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.043e-19
Identity = 60/183 (32.79%), Postives = 89/183 (48.63%), Query Frame = 1
Query:  214 WPGEAHS------LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVL 639
            W  E HS      ++V++ LF G+S+YQ + VF+S  +GK L L+G V  +E+D   Y EM+ H+P+   P  K V                                    ++YFPE A G ED RV ++  DA+ FLR   +  YD II D++DP G ++ L  + F+    KAL+  G+L
Sbjct:    4 WFSELHSPHVKFDIRVEKQLFSGESDYQRIDVFQSPEFGKFLTLNGSVIFSEQDCFIYNEMVVHVPMSVHPDVKNVLIIGGGDGGVSKELLQYDNIENIDIVEQDNMFVDVCREYFPETASGLEDERVHIYNSDALRFLRS-KQDMYDLIINDATDPFGASEGLFTREFYGNCYKALKEDGIL 185          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_CLOAB (Spermidine synthase OS=Clostridium acetobutylicum GN=speE PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.043e-19
Identity = 57/191 (29.84%), Postives = 88/191 (46.07%), Query Frame = 1
Query:  211 MWPGEAH------SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFE-DPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 657
            +W  E+H      S++VKE L+  K+ +Q++  F+S  +G    LDG + +TEKDE  Y EMI H+P+   P  K V                                    +KY  + +   + D R+ +H  D  EF+++   G YD I+VDS+DP+GP + L    F+    + L   G+L N  ES
Sbjct:    4 LWYSESHADDTKFSIRVKEHLYSEKTPFQQIDFFKSETFGTFFTLDGYIMMTEKDEFIYHEMITHVPMAVNPKIKKVLIVGGGDGGTSREILRYNTIEKVDMVEIDERVVRLCQKYLTQTSCKLDNDSRLTMHFEDGKEFVKRAETGFYDLILVDSTDPIGPGEGLFTNEFYRDCERILSDDGILINQHES 194          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_YERPY (Spermidine synthase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=speE PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.586e-19
Identity = 52/168 (30.95%), Postives = 87/168 (51.79%), Query Frame = 1
Query:  241 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 636
            V+ +L++ K+E+Q++++FE+   G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K V                                    ++Y P  + G ++DPR +L I D V F+ Q    ++D II D +DP+GP + L    F++  A++L  GG+
Sbjct:   21 VENVLYREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQYLPNHSAGAYDDPRFKLVIDDGVNFVNQTTE-KFDVIISDCTDPIGPGESLFTSVFYEGCARSLNEGGI 187          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_YERPS (Spermidine synthase OS=Yersinia pseudotuberculosis GN=speE PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.586e-19
Identity = 52/168 (30.95%), Postives = 87/168 (51.79%), Query Frame = 1
Query:  241 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 636
            V+ +L++ K+E+Q++++FE+   G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K V                                    ++Y P  + G ++DPR +L I D V F+ Q    ++D II D +DP+GP + L    F++  A++L  GG+
Sbjct:   21 VENVLYREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQYLPNHSAGAYDDPRFKLVIDDGVNFVNQTTE-KFDVIISDCTDPIGPGESLFTSVFYEGCARSLNEGGI 187          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_YERPB (Spermidine synthase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=speE PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.586e-19
Identity = 52/168 (30.95%), Postives = 87/168 (51.79%), Query Frame = 1
Query:  241 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 636
            V+ +L++ K+E+Q++++FE+   G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K V                                    ++Y P  + G ++DPR +L I D V F+ Q    ++D II D +DP+GP + L    F++  A++L  GG+
Sbjct:   21 VENVLYREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQYLPNHSAGAYDDPRFKLVIDDGVNFVNQTTE-KFDVIISDCTDPIGPGESLFTSVFYEGCARSLNEGGI 187          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_YERP3 (Spermidine synthase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=speE PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.586e-19
Identity = 52/168 (30.95%), Postives = 87/168 (51.79%), Query Frame = 1
Query:  241 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 636
            V+ +L++ K+E+Q++++FE+   G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K V                                    ++Y P  + G ++DPR +L I D V F+ Q    ++D II D +DP+GP + L    F++  A++L  GG+
Sbjct:   21 VENVLYREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQYLPNHSAGAYDDPRFKLVIDDGVNFVNQTTE-KFDVIISDCTDPIGPGESLFTSVFYEGCARSLNEGGI 187          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_SERP5 (Spermidine synthase OS=Serratia proteamaculans (strain 568) GN=speE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.123e-18
Identity = 52/168 (30.95%), Postives = 85/168 (50.60%), Query Frame = 1
Query:  241 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 636
            V+ +L++ K+E+Q++++FE+   G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K V                                    ++Y P    G ++DPR +L I D V F+ Q    ++D II D +DP+GP + L    F++  A+ L  GG+
Sbjct:   21 VENVLYREKTEHQDLVIFENPVLGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHQGVEQITMVEIDAGVVEFCRQYLPNHNAGAYDDPRFKLVIDDGVNFVNQTDE-KFDVIISDCTDPIGPGESLFTSAFYEGCARCLNEGGI 187          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_SYNP6 (Spermidine synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=speE PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.467e-18
Identity = 57/211 (27.01%), Postives = 96/211 (45.50%), Query Frame = 1
Query:  208 PMWPGEAHSLKVK-----EILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES----MWLHTHLIEDMISICRE 708
            P+W  E    +V+     +IL++  S +Q++ + ++  YG+ L+LD      E+ E  Y E + H PL +  S   V                                   S++Y   +   + DPR+ + IGD + F++  P   YD I+VD SDP GPA  L  + F++   + L+PGGV  + AES    + +H  +IE + ++  E
Sbjct:    6 PVWIDEVFEDRVRYGLRGQILWEETSPFQKITIVDTEHYGRGLLLDDCWMTAERCEVCYHEYLVHPPLTTAASIARVLVIGGGDGGTVREVLRYAEVEQVDLVEIDGRVVELSQEYLGAIGTAWADPRLNVKIGDGIAFVQTAPDASYDVILVDGSDPAGPAAGLFNREFYENCRRVLKPGGVFASQAESPDSFLAVHLEMIETLSAVFAE 216          
The following BLAST results are available for this feature:
BLAST of FC931395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
SPEE_ESCF33.861e-1930.95Spermidine synthase OS=Escherichia fergusonii (str... [more]
SPEE_PECCP5.043e-1932.14Spermidine synthase OS=Pectobacterium carotovorum ... [more]
SPEE_EUBE25.043e-1932.79Spermidine synthase OS=Eubacterium eligens (strain... [more]
SPEE_CLOAB5.043e-1929.84Spermidine synthase OS=Clostridium acetobutylicum ... [more]
SPEE_YERPY6.586e-1930.95Spermidine synthase OS=Yersinia pseudotuberculosis... [more]
SPEE_YERPS6.586e-1930.95Spermidine synthase OS=Yersinia pseudotuberculosis... [more]
SPEE_YERPB6.586e-1930.95Spermidine synthase OS=Yersinia pseudotuberculosis... [more]
SPEE_YERP36.586e-1930.95Spermidine synthase OS=Yersinia pseudotuberculosis... [more]
SPEE_SERP51.123e-1830.95Spermidine synthase OS=Serratia proteamaculans (st... [more]
SPEE_SYNP61.467e-1827.01Spermidine synthase OS=Synechococcus sp. (strain A... [more]

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Properties
Property NameValue
Genbank descriptionC34104F08EF PostHarvP1 Citrus clementina cDNA clone C34104F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931395 ID=FC931395; Name=FC931395; organism=Citrus clementina; type=EST; length=712bp
GGAAAAGGTTTGGGATGCCAGAAGACTATGGATGGGAAGGAGAGTAACAA
GAATGGTTCAGCGGGGGCAATCCCTTCTTGTTGCTTGAAAGCAAGGGCTT
CAGCCCCAGAGCTTGATGCCAAATGCCACTCCACTGTTGTTTCTGGGTGG
TTTTCAGAATCTCAGTCTACCTCTGATAAAACTGGCAAAACAATGTACTT
CAACAATCCAATGTGGCCAGGAGAGGCCCATTCATTGAAAGTAAAAGAAA
TTTTATTCAAGGGAAAGTCTGAGTACCAAGAGGTCCTGGTTTTTGAGTCA
TTGGCATATGGGAAAGTGCTTGTTCTTGATGGAATTGTTCAACTAACGGA
GAAAGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTTTGTT
CGATTCCATCTCCGAAAACCGTTTCTAAAAAGTATTTTCCTGAGCTAGCT
GTTGGTTTTGAGGATCCTCGTGTACGACTGCACATTGGTGATGCTGTTGA
ATTCCTACGGCAAGTGCCCAGAGGGGAATATGATGCAATTATTGTTGATT
CATCAGACCCTGTAGGTCCTGCTCAAGAGCTTGTAGAGAAGCCATTTTTT
GACACAATTGCTAAAGCATTAAGGCCTGGAGGTGTCCTCTGTAACATGGC
AGAAAGTATGTGGCTTCATACTCACCTTATTGAGGACATGATTTCTATTT
GTCGTGAAACAT
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