FC931405
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSB6_BOVIN (Proteasome subunit beta type-6 OS=Bos taurus GN=PSMB6 PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.272e-17 Identity = 50/146 (34.25%), Postives = 80/146 (54.79%), Query Frame = 3 Query: 237 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671 TGTTI+ + F GV+LGAD+R T G + ++ +K+ + I+CC +G+AADT+AV D V+ QL H V TA +L K+ + Y+ + A +++ G D G ++++ G PFA GSGS ++ Y+ Sbjct: 33 TGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQPFAIGGSGSSYIYGYVDATYR 178
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSB6_RAT (Proteasome subunit beta type-6 OS=Rattus norvegicus GN=Psmb6 PE=1 SV=3) HSP 1 Score: 87.4261 bits (215), Expect = 3.832e-17 Identity = 49/146 (33.56%), Postives = 80/146 (54.79%), Query Frame = 3 Query: 237 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671 TGTTI+ + F GV+LGAD+R T G + ++ +K+ + +I+CC +G+AADT+AV D V+ QL H V TA +L K+ + Y+ + A +++ G D G ++++ G FA GSGS ++ Y+ Sbjct: 32 TGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYR 177 HSP 2 Score: 21.557 bits (44), Expect = 3.832e-17 Identity = 8/15 (53.33%), Postives = 12/15 (80.00%), Query Frame = 1 Query: 673 GLTKDEGIQLVADAI 717 G+TKDE +Q A+A+ Sbjct: 179 GMTKDECLQFTANAL 193
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSB6_MOUSE (Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3) HSP 1 Score: 87.4261 bits (215), Expect = 3.832e-17 Identity = 49/146 (33.56%), Postives = 80/146 (54.79%), Query Frame = 3 Query: 237 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671 TGTTI+ + F GV+LGAD+R T G + ++ +K+ + +I+CC +G+AADT+AV D V+ QL H V TA +L K+ + Y+ + A +++ G D G ++++ G FA GSGS ++ Y+ Sbjct: 32 TGTTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYR 177 HSP 2 Score: 21.557 bits (44), Expect = 3.832e-17 Identity = 8/15 (53.33%), Postives = 12/15 (80.00%), Query Frame = 1 Query: 673 GLTKDEGIQLVADAI 717 G+TKDE +Q A+A+ Sbjct: 179 GMTKDECLQFTANAL 193
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSB6_YEAST (Proteasome component PRE3 OS=Saccharomyces cerevisiae GN=PRE3 PE=1 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 1.077e-16 Identity = 48/133 (36.09%), Postives = 79/133 (59.40%), Query Frame = 3 Query: 240 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGP-HLHTIYPHGSTDTLPFATMGSGS 635 GT+I+ + F+DGVILGAD+R T G + ++ +K+ + I+CC +G+AADT+A+ D+V L+L+ G S TA ++ K+ + + + A +++ G D ++TI GS LP+A GSGS Sbjct: 19 GTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPS-TETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGS 150
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSB6_HUMAN (Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4) HSP 1 Score: 87.0409 bits (214), Expect = 1.077e-16 Identity = 49/146 (33.56%), Postives = 79/146 (54.11%), Query Frame = 3 Query: 237 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671 TGTTI+ + F GV+LGAD+R T G + ++ +K+ + I+CC +G+AADT+AV D V+ QL H V TA +L K+ + Y+ + A +++ G D G ++++ G FA GSGS ++ Y+ Sbjct: 33 TGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYR 178
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSB9_ORYLA (Proteasome subunit beta type-9 OS=Oryzias latipes GN=psmb9 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16 Identity = 48/147 (32.65%), Postives = 78/147 (53.06%), Query Frame = 3 Query: 234 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKR 674 KTGTTI+ + F GV+LG+D+R + G V ++ K+ + IYC +G+AAD + + +MV+ QL +H + +V +A TL+K + Y+ + A L++ G D G PFA GSGS +++Y+R Sbjct: 16 KTGTTIIAIEFNGGVVLGSDSRVSAGDSVVNRVMNKLSPLHDKIYCALSGSAADAQTIAEMVNYQLDVHSLEIDEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDRRDGGQVFATLGGLLTRQPFAIGGSGSSYVYGFVDAEYRR 162
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSB6_DICDI (Proteasome subunit beta type-6 OS=Dictyostelium discoideum GN=psmB6 PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.134e-16 Identity = 50/145 (34.48%), Postives = 80/145 (55.17%), Query Frame = 3 Query: 240 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671 GT+I+ + + GVI+GAD+R T G + ++ KI + IYCC +G+AADT+A++D V L++H E V TA +L + ++ + + A +++ G D G ++ I GS PFA GSGS +SK+K Sbjct: 14 GTSIMAVEYDGGVIMGADSRTTTGAYIANRVTNKITPIHERIYCCRSGSAADTQAISDYVRYYLEMHTSELCDEPDVKTAASLFQLLCYSNKNNLMAGIIVAGWDKHQGGSVYNISLGGSMVKQPFAIGGSGSTYIYGYCDSKFK 158
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16 Identity = 53/150 (35.33%), Postives = 78/150 (52.00%), Query Frame = 3 Query: 237 TGTTIVGLIFQDGVILGADTRAT-EGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKRPD 680 TGTTI+ + F GVI+G+D+RA+ G V K K+ + I+CC AG+ AD +AVT Q+ H V A ++LK+ +N + +QA + G D GP ++T+ G + PF GSGS ++KYK PD Sbjct: 15 TGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYK-PD 163
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PB6LA_SALSA (Proteasome subunit beta type-6-A like protein OS=Salmo salar GN=psmb6l-a PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16 Identity = 53/150 (35.33%), Postives = 78/150 (52.00%), Query Frame = 3 Query: 237 TGTTIVGLIFQDGVILGADTRAT-EGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKRPD 680 TGTTI+ + F GVI+G+D+RA+ G V K K+ + I+CC AG+ AD +AVT Q+ H V A ++LK+ +N + +QA + G D GP ++T+ G + PF GSGS ++KYK PD Sbjct: 15 TGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYK-PD 163
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSB9_HUMAN (Proteasome subunit beta type-9 OS=Homo sapiens GN=PSMB9 PE=1 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 1.115e-13 Identity = 48/147 (32.65%), Postives = 77/147 (52.38%), Query Frame = 3 Query: 237 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCT--GPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671 TGTTI+ + F GV++G+D+R + G V ++ +K+ + IYC +G+AAD +AV DM + QL+LH V+ A +++ + Y+ + A L++ G D G T+ G PFA GSGS ++ YK Sbjct: 19 TGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGTL--GGMLTRQPFAIGGSGSTFIYGYVDAAYK 163 The following BLAST results are available for this feature:
BLAST of FC931405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 46
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931405 ID=FC931405; Name=FC931405; organism=Citrus clementina; type=EST; length=724bpback to top |