FC931405

Overview
NameFC931405
Unique NameFC931405
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15299 contig Ccv1_Contig15299:1..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSB9_BOVIN (Proteasome subunit beta type-9 OS=Bos taurus GN=PSMB9 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.901e-13
Identity = 45/145 (31.03%), Postives = 75/145 (51.72%), Query Frame = 3
Query:  237 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +  +IYC  +G+AAD +A+ DM + QL+LH         V+ A  +++   + Y+  + A L++ G D            G     PFA  GSGS       ++ YK
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQHIYCALSGSAADAQAIADMAAYQLELHGMELEEPPLVLAAANVVRNITYKYREDLSAHLMVAGWDQREGGQVYGTMSGMLIRQPFAIGGSGSTYIYGYVDAAYK 163          
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSB9_RAT (Proteasome subunit beta type-9 OS=Rattus norvegicus GN=Psmb9 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.483e-13
Identity = 47/146 (32.19%), Postives = 77/146 (52.74%), Query Frame = 3
Query:  237 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   IYC  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D   G  ++     G     PFA  GSGS       ++ YK
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIYCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANIVKNISYKYREDLLAHLMVAGWDQHEGGQVYGTM-GGMLIRQPFAIGGSGSTYIYGYVDAAYK 163          
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSB9_MUSMB (Proteasome subunit beta type-9 OS=Mus musculus bactrianus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 44/145 (30.34%), Postives = 73/145 (50.34%), Query Frame = 3
Query:  237 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D            G     PF   GSGS       ++ YK
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGTMGGMLIRQPFTISGSGSSYIYGYVDAAYK 163          
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.609e-12
Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 3
Query:  240 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHL-----FNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671
            GTT VGL+ ++GV+L ADTRA+ G I+  KN  KIH +  ++   GAG   D   +  ++ ++  L++   G+E  V    TLL   L     F Y G+     ++GG D   P L ++   G      +A  GSG   A ++ +S+Y+
Sbjct:   10 GTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGW----FLVGGYD-EKPRLFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYR 153          
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.609e-12
Identity = 42/145 (28.97%), Postives = 74/145 (51.03%), Query Frame = 3
Query:  240 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYP-HGSTDTLPFATMGSGSLAAMAMFESKY 668
            GTT VGL+ +DGV++  + RAT G  +  K  +KI+ +A  +    AG+  D + +  ++  +  L+     R+  V    TL    L +Y+ +     L++GG+D  G  +++I P  G+ +       GSGSL A  + E ++
Sbjct:   11 GTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRF 155          
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 42/147 (28.57%), Postives = 77/147 (52.38%), Query Frame = 3
Query:  240 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY--VQAALVLGGVDCTGPHLHTI-YPHGSTDTLPFATMGSGSLAAMAMFESKYK 671
            GTT VG++  DG++L ++ RAT G  +  K  +K++ +   +    AG+  D + +  +VS + QL++     ES  +  +T L  +  +   Y  +   L++GGVD  GP ++++    GS +    +  GSGS  A  + E +Y+
Sbjct:    9 GTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRD-ESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPGIYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYR 154          
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 48/148 (32.43%), Postives = 76/148 (51.35%), Query Frame = 3
Query:  240 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVD-CTGPHLHTIYP-HGSTDTLPFATMGSGSLAAMAMFESKYKR 674
            GTT VGLI  D VIL  D RA+ G +V DK  +K++ +   I    AG+  D +A+  ++ ++ +L++  TGR    +   TLL   L + + +     +++GG D   G  L ++ P  G  +   F   GSGS  A  + E+ Y R
Sbjct:    6 GTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDR 153          
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSB9_MUSSI (Proteasome subunit beta type-9 OS=Mus spicilegus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 44/145 (30.34%), Postives = 73/145 (50.34%), Query Frame = 3
Query:  237 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D            G     PF   GSGS       ++ YK
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYK 163          
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSB9_MUSPL (Proteasome subunit beta type-9 OS=Mus platythrix GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 44/145 (30.34%), Postives = 73/145 (50.34%), Query Frame = 3
Query:  237 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D            G     PF   GSGS       ++ YK
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYK 163          
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSB9_MUSDU (Proteasome subunit beta type-9 OS=Mus dunni GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 44/145 (30.34%), Postives = 73/145 (50.34%), Query Frame = 3
Query:  237 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D            G     PF   GSGS       ++ YK
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYK 163          
The following BLAST results are available for this feature:
BLAST of FC931405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
PSB9_BOVIN1.901e-1331.03Proteasome subunit beta type-9 OS=Bos taurus GN=PS... [more]
PSB9_RAT2.483e-1332.19Proteasome subunit beta type-9 OS=Rattus norvegicu... [more]
PSB9_MUSMB1.232e-1230.34Proteasome subunit beta type-9 OS=Mus musculus bac... [more]
PSMB_PYRFU1.609e-1232.89Proteasome subunit beta OS=Pyrococcus furiosus GN=... [more]
PSMB_ARCFU1.609e-1228.97Proteasome subunit beta OS=Archaeoglobus fulgidus ... [more]
PSMB_METTE2.102e-1228.57Proteasome subunit beta OS=Methanosarcina thermoph... [more]
PSMB_METJA2.102e-1232.43Proteasome subunit beta OS=Methanocaldococcus jann... [more]
PSB9_MUSSI2.102e-1230.34Proteasome subunit beta type-9 OS=Mus spicilegus G... [more]
PSB9_MUSPL2.102e-1230.34Proteasome subunit beta type-9 OS=Mus platythrix G... [more]
PSB9_MUSDU2.102e-1230.34Proteasome subunit beta type-9 OS=Mus dunni GN=Psm... [more]

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Properties
Property NameValue
Genbank descriptionC34104G06EF PostHarvP1 Citrus clementina cDNA clone C34104G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931405 ID=FC931405; Name=FC931405; organism=Citrus clementina; type=EST; length=724bp
TTCTTTCGTTTTAAGTTTTTAAGACTCGAAGTCGCTCGCTGTCGCTCGCT
GTCGCTGCTGCTCTCCAAAGCTCACGCCTTGTTTTCATTCCAGTGGGATC
AATCTCAGGTTGAAGAAAGTTTAAAATGTCAAACTCTGCAATAGATGTTC
CTTCCAGGGGTGGATTTAGTTTTGATCTCTGCCGGCGGAATGATATGCTT
GCAAAGAAGGGTGTCAACCTTCCATCTTTCCGAAAGACGGGGACGACCAT
TGTTGGGTTGATTTTCCAGGATGGCGTCATTCTTGGGGCAGATACCAGAG
CAACTGAAGGACCCATAGTTTGCGATAAGAATTGTGAGAAAATTCATTAC
ATGGCTCCAAACATATATTGTTGTGGTGCAGGAACTGCTGCTGACACAGA
GGCTGTAACTGACATGGTCAGCTCACAGCTGCAGTTACATCGTTATCATA
CTGGTAGAGAGTCAAGGGTTGTTACAGCACTGACTCTTCTCAAGAAGCAC
CTTTTCAACTACCAAGGTTATGTGCAAGCTGCTTTGGTTCTTGGTGGAGT
TGATTGCACTGGACCTCATCTTCACACAATATATCCACATGGTTCAACTG
ACACTTTGCCATTTGCGACAATGGGTTCTGGTTCTCTTGCTGCCATGGCT
ATGTTTGAATCAAAATACAAGAGGCCTGACTAAAGATGAGGGAATACAGC
TAGTTGCGGACGCCATTTGCTCTG
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