FC931405

Overview
NameFC931405
Unique NameFC931405
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15299 contig Ccv1_Contig15299:1..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSB9_MOUSE (Proteasome subunit beta type-9 OS=Mus musculus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 44/145 (30.34%), Postives = 73/145 (50.34%), Query Frame = 3
Query:  237 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D            G     PF   GSGS       ++ YK
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYK 163          
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 47/146 (32.19%), Postives = 78/146 (53.42%), Query Frame = 3
Query:  240 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQ--AALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671
            GTT VG++ +DGV+L AD RA+ G I+  +N  KIH +  ++   GAG   D   +  ++ ++ +L+   +G+   V    TLL  ++ N   Y    A  ++GG D   P L+++   G      +AT GSG   A ++ +S+YK
Sbjct:   10 GTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLL-ANIMNGAKYFPYLAWFLVGGYD-EKPKLYSVDMVGGITEDKYATAGSGMEFAYSILDSEYK 153          
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSB5B_ARATH (Proteasome subunit beta type-5-B OS=Arabidopsis thaliana GN=PBE2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 55/171 (32.16%), Postives = 85/171 (49.71%), Query Frame = 3
Query:  168 SFDLCRRNDM--LAKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671
            SFDL R  D     KK V +    K GTT +  IF++GV++ AD+RA+ G  +  ++ +KI  + P +    AG AAD +     +  + +LH     R   V  A  LL   L++Y+G  +    ++ G D TGP L+ +   G        ++GSGS  A  + +S YK
Sbjct:   32 SFDLPRTTDFDGFQKKAVEMVKPAK-GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGYK 201          
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 41/144 (28.47%), Postives = 71/144 (49.31%), Query Frame = 3
Query:  240 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKY 668
            GTT VG+  +DGV+   + RA+ G ++  K  +KI  +  +I    AG+ AD +++   + ++  L+R     +  +  A  L    L + + Y      +LGGVD  G  ++++ P G      F + GSGS  A  + E +Y
Sbjct:    9 GTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGVDENGAKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRY 152          
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSMB_PYRAB (Proteasome subunit beta OS=Pyrococcus abyssi GN=psmB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 44/144 (30.56%), Postives = 70/144 (48.61%), Query Frame = 3
Query:  240 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671
            GTT VG++  DGV+L AD RA+ G IV  KN  KIH +  ++   GAG   D   +  ++ ++ +L+   +G+   V    TLL   L   +     A  L G     P L+++   G      +   GSG   A ++ +S+Y+
Sbjct:   10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYR 153          
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSB5A_ARATH (Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 54/171 (31.58%), Postives = 84/171 (49.12%), Query Frame = 3
Query:  168 SFDLCRRN--DMLAKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671
            SFDL R    D   KK  ++    K GTT +  IF+ GV++ AD+RA+ G  +  ++ +KI  + P +    AG AAD +     +  + +LH     R   V  A  LL   L++Y+G  +    ++ G D TGP L+ +   G        ++GSGS  A  + +S YK
Sbjct:   32 SFDLPRTKEFDGFQKKAKDMLKHAK-GTTTLAFIFKGGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGYK 201          
The following BLAST results are available for this feature:
BLAST of FC931405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
PSB9_MOUSE2.102e-1230.34Proteasome subunit beta type-9 OS=Mus musculus GN=... [more]
PSMB_PYRHO6.116e-1232.19Proteasome subunit beta OS=Pyrococcus horikoshii G... [more]
PSB5B_ARATH7.988e-1232.16Proteasome subunit beta type-5-B OS=Arabidopsis th... [more]
PSMB_METTH5.178e-1128.47Proteasome subunit beta OS=Methanobacterium thermo... [more]
PSMB_PYRAB6.762e-1130.56Proteasome subunit beta OS=Pyrococcus abyssi GN=ps... [more]
PSB5A_ARATH8.832e-1131.58Proteasome subunit beta type-5-A OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionC34104G06EF PostHarvP1 Citrus clementina cDNA clone C34104G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931405 ID=FC931405; Name=FC931405; organism=Citrus clementina; type=EST; length=724bp
TTCTTTCGTTTTAAGTTTTTAAGACTCGAAGTCGCTCGCTGTCGCTCGCT
GTCGCTGCTGCTCTCCAAAGCTCACGCCTTGTTTTCATTCCAGTGGGATC
AATCTCAGGTTGAAGAAAGTTTAAAATGTCAAACTCTGCAATAGATGTTC
CTTCCAGGGGTGGATTTAGTTTTGATCTCTGCCGGCGGAATGATATGCTT
GCAAAGAAGGGTGTCAACCTTCCATCTTTCCGAAAGACGGGGACGACCAT
TGTTGGGTTGATTTTCCAGGATGGCGTCATTCTTGGGGCAGATACCAGAG
CAACTGAAGGACCCATAGTTTGCGATAAGAATTGTGAGAAAATTCATTAC
ATGGCTCCAAACATATATTGTTGTGGTGCAGGAACTGCTGCTGACACAGA
GGCTGTAACTGACATGGTCAGCTCACAGCTGCAGTTACATCGTTATCATA
CTGGTAGAGAGTCAAGGGTTGTTACAGCACTGACTCTTCTCAAGAAGCAC
CTTTTCAACTACCAAGGTTATGTGCAAGCTGCTTTGGTTCTTGGTGGAGT
TGATTGCACTGGACCTCATCTTCACACAATATATCCACATGGTTCAACTG
ACACTTTGCCATTTGCGACAATGGGTTCTGGTTCTCTTGCTGCCATGGCT
ATGTTTGAATCAAAATACAAGAGGCCTGACTAAAGATGAGGGAATACAGC
TAGTTGCGGACGCCATTTGCTCTG
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