FC931405
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSB9_MOUSE (Proteasome subunit beta type-9 OS=Mus musculus GN=Psmb9 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12 Identity = 44/145 (30.34%), Postives = 73/145 (50.34%), Query Frame = 3 Query: 237 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671 TGTTI+ + F GV++G+D+R + G V ++ +K+ + I+C +G+AAD +A+ DM + QL+LH V+ A ++K + Y+ + A L++ G D G PF GSGS ++ YK Sbjct: 19 TGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYK 163
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12 Identity = 47/146 (32.19%), Postives = 78/146 (53.42%), Query Frame = 3 Query: 240 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQ--AALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671 GTT VG++ +DGV+L AD RA+ G I+ +N KIH + ++ GAG D + ++ ++ +L+ +G+ V TLL ++ N Y A ++GG D P L+++ G +AT GSG A ++ +S+YK Sbjct: 10 GTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLL-ANIMNGAKYFPYLAWFLVGGYD-EKPKLYSVDMVGGITEDKYATAGSGMEFAYSILDSEYK 153
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSB5B_ARATH (Proteasome subunit beta type-5-B OS=Arabidopsis thaliana GN=PBE2 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12 Identity = 55/171 (32.16%), Postives = 85/171 (49.71%), Query Frame = 3 Query: 168 SFDLCRRNDM--LAKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671 SFDL R D KK V + K GTT + IF++GV++ AD+RA+ G + ++ +KI + P + AG AAD + + + +LH R V A LL L++Y+G + ++ G D TGP L+ + G ++GSGS A + +S YK Sbjct: 32 SFDLPRTTDFDGFQKKAVEMVKPAK-GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGYK 201
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11 Identity = 41/144 (28.47%), Postives = 71/144 (49.31%), Query Frame = 3 Query: 240 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKY 668 GTT VG+ +DGV+ + RA+ G ++ K +KI + +I AG+ AD +++ + ++ L+R + + A L L + + Y +LGGVD G ++++ P G F + GSGS A + E +Y Sbjct: 9 GTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGVDENGAKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRY 152
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSMB_PYRAB (Proteasome subunit beta OS=Pyrococcus abyssi GN=psmB PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11 Identity = 44/144 (30.56%), Postives = 70/144 (48.61%), Query Frame = 3 Query: 240 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671 GTT VG++ DGV+L AD RA+ G IV KN KIH + ++ GAG D + ++ ++ +L+ +G+ V TLL L + A L G P L+++ G + GSG A ++ +S+Y+ Sbjct: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYR 153
BLAST of FC931405 vs. ExPASy Swiss-Prot
Match: PSB5A_ARATH (Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11 Identity = 54/171 (31.58%), Postives = 84/171 (49.12%), Query Frame = 3 Query: 168 SFDLCRRN--DMLAKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671 SFDL R D KK ++ K GTT + IF+ GV++ AD+RA+ G + ++ +KI + P + AG AAD + + + +LH R V A LL L++Y+G + ++ G D TGP L+ + G ++GSGS A + +S YK Sbjct: 32 SFDLPRTKEFDGFQKKAKDMLKHAK-GTTTLAFIFKGGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGYK 201 The following BLAST results are available for this feature:
BLAST of FC931405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 46
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931405 ID=FC931405; Name=FC931405; organism=Citrus clementina; type=EST; length=724bpback to top |