FC931408

Overview
NameFC931408
Unique NameFC931408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:567..1266. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931408 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.552e-47
Identity = 106/236 (44.92%), Postives = 140/236 (59.32%), Query Frame = 2
Query:    2 EMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDP--DLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLP-RLVKAIEDT-GDNILLFETPETMDRDNS 694
            E YLK ++L+ +PN G ++  CNSW+++  + K  R+FF N  YLPS+TP  L +YR EEL  +RG+G GERK +DRIYDYDVYNDLG+PD   + ARPVLGG   PYPRR RTGR +   D  SEK     Y+PRDEAF  +K   F A  + SV   ++P L  AF      L F  F+ +  L+  GV LP      F + + P  ++K I  T G+  L +  P+ M  D S
Sbjct:  120 EFYLKSLILEDIPNHGTIHFVCNSWVYNSKNYKTDRIFFANNTYLPSETPAPLLKYREEELKNVRGDGTGERKEWDRIYDYDVYNDLGNPDSGDKYARPVLGGSALPYPRRERTGRGKTRKDPNSEKPSDFVYLPRDEAFGHLKSSDFLAYGIKSVSQDVLPVLTDAFDGNILSLEFDNFAEVHKLYEGGVTLP----TNFLSKIAPIPVIKEIFRTDGEQFLKYPPPKVMQVDKS 351          
BLAST of FC931408 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.087e-46
Identity = 101/244 (41.39%), Postives = 146/244 (59.84%), Query Frame = 2
Query:    2 EMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSE---KREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLK-QEGFWNTLLPRLVKAIEDTGDNILLFETPETMD-------RDNSFG 700
            E+ L +I+++   +  +    N+W+HSK+DN Q R+ F ++  LPS+TPDG+K  R ++L  +RG+G+GERK ++RIYDYDVYNDLGDP +K E  RPVLG  + PYPRRCRTGRP    D   E   K +  FYVPRDE F E+K+ TF A    ++ H LVPS+  A  + D+ F  FS ID L+   + L   + ++      +   +  I +  + +L ++TP  +        RDN FG
Sbjct:  179 EICLSEIIIEDSTD-TILFPANTWIHSKNDNPQARIIFRSQPCLPSETPDGIKELREKDLVSVRGDGKGERKPHERIYDYDVYNDLGDP-RKTERVRPVLGVPETPYPRRCRTGRPLVSKDPPCESRGKEKEEFYVPRDEVFEEIKRDTFRAGRFKALFHNLVPSIAAALSNLDIPFTCFSDIDNLYKSNIVLGHTEPKDTGLGGFIGGFMNGILNVTETLLKYDTPAVIKWDRFAWLRDNEFG 420          
BLAST of FC931408 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.087e-46
Identity = 106/227 (46.70%), Postives = 135/227 (59.47%), Query Frame = 2
Query:   62 CNSWLHSKHDNKQKRVFF-TNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEK---REGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDL--GFPYFSAIDALFNEGVNLPPLKQEG-----FWNTLLPRLVKAIEDTG-------DNILLFETPETMDRD 688
            C SW+   H +  KR FF   K Y+PSQTP G+++ R  EL  LRGNG GERK +DRIYDYDVYNDLG    KPE  RPVLGGK++PYPRRCRTGRPR  TD  SE+   ++G  YVPRDE F+E K+  F  K + S LH L   L+   V+ D+   FP  ++IDAL+++     P++ EG       + L   LV  ++  G         +  FETPE  D D
Sbjct:  201 CQSWIDPSHCSPDKRTFFPVEKSYIPSQTPKGVEKLRKSELEALRGNGCGERKKHDRIYDYDVYNDLG----KPESKRPVLGGKEHPYPRRCRTGRPRSKTDPSSEEESHKKGEMYVPRDETFTERKEQAFLTKQLLSQLHGLCTGLK---VNKDILPSFPTLASIDALYDDDFRNQPVQPEGGKVRLILDLLAKELVHLVKLEGAEFVEGIRRVFKFETPEIHDMD 420          
BLAST of FC931408 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.992e-44
Identity = 105/235 (44.68%), Postives = 135/235 (57.45%), Query Frame = 2
Query:    2 EMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQ-NPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLG-----FPYFSAIDALFNEGVNLPPLKQEGFWNTL--LPRLVKAIEDTGDNILLFETPETM 679
            E +LK + L+ +PN G +   CNSW+++    K  R+FF NK YLPS+TP  L +YR EEL  LRG+G GERK ++RIYDYDVYNDLG+PD    LARP+LGG   +PYPRR RTGR     D  SEK     YVPRDE F  +K   F A  + SV   +VP+ E+AF   DL      F  F  +  LF  G+ LP        +TL  LP + +     G+ +L F  P  +
Sbjct:  132 EFFLKSLTLEDVPNHGTIRFVCNSWVYNSKLYKSPRIFFANKSYLPSETPSPLVKYREEELQTLRGDGTGERKLHERIYDYDVYNDLGNPDHGEHLARPILGGSSTHPYPRRGRTGRYPTRKDPNSEKPATETYVPRDENFGHLKSSDFLAYGIKSVSQCVVPAFESAF---DLNFTPNEFDSFQDVRNLFEGGIKLP----LDVISTLSPLPVVKEIFRTDGEQVLKFTPPHVI 359          
BLAST of FC931408 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.437e-44
Identity = 102/238 (42.86%), Postives = 135/238 (56.72%), Query Frame = 2
Query:    2 EMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDL---GFPYFSAIDALFNEGVNLPP--LKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDNS 694
            E +L  + LD +PN G +   CNSW+++   +K  R+FF N+ YLPS+TP  L  YR EEL  LRG+G GERK ++RIYDYDVYNDLG+PD     ARPVLGG +  PYPRR RTGR     D  SE R    Y+PRDEAF  +K   F    + +V   +VP+LE+ F D +     F  F  +  L+  G+ LP   L Q     + LP L +     G+N L +  P+ +    S
Sbjct:  127 EFFLVSLTLDDIPNHGSIYFVCNSWIYNAKHHKIDRIFFANQTYLPSETPAPLVHYREEELNNLRGDGTGERKEWERIYDYDVYNDLGNPDSGENHARPVLGGSETYPYPRRGRTGRKPTRKDPNSESRSDYVYLPRDEAFGHLKSSDFLTYGLKAVSQNVVPALESVFFDLNFTPNEFDSFDEVHGLYEGGIKLPTNILSQ----ISPLPVLKEIFRTDGENTLKYPPPKVIQVSRS 360          
BLAST of FC931408 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.756e-43
Identity = 101/238 (42.44%), Postives = 135/238 (56.72%), Query Frame = 2
Query:    2 EMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLG-----FPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDNS 694
            E +L  + L+ +PN G ++  CNSW+++    K  R+FF N+ YLPS+TP  L +YR EEL  LRG+G GERK ++R+YDYDVYNDLGDPDK    ARPVLGG    PYPRR RTGR     D  SE R  + Y+PRDEAF  +K   F    + SV   ++P L++AF   DL      F  F  +  L++ G+ LP         + LP L +     G+  L F  P+ +    S
Sbjct:  124 EFFLVSLTLEDIPNHGSIHFVCNSWIYNAKLFKSDRIFFANQTYLPSETPAPLVKYREEELHNLRGDGTGERKEWERVYDYDVYNDLGDPDKGENHARPVLGGNDTFPYPRRGRTGRKPTRKDPNSESRSNDVYLPRDEAFGHLKSSDFLTYGLKSVSQNVLPLLQSAF---DLNFTPREFDSFDEVHGLYSGGIKLPTDIISKI--SPLPVLKEIFRTDGEQALKFPPPKVIQVSKS 356          
BLAST of FC931408 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.427e-42
Identity = 99/236 (41.95%), Postives = 131/236 (55.51%), Query Frame = 2
Query:    2 EMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAID---ALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDNS 694
            E +L  + LD +PN G +   CNSW+++    +  R+FF NK YLPS TP  L  YR EEL  LRG+G GER+ +DRIYDYDVYNDLG PD+K  L RPVLGG    PYPRR RTGR +   +  SE R    Y+PRDEAF  VK   F    + S    +VP L +  V   L  P F+  +   +L++ G+ LP         + +P   +     G+  L F  P+ +  D+S
Sbjct:  132 EFFLVSLTLDDVPNVGSIKFACNSWIYNDKKYQSDRIFFANKTYLPSATPAPLVSYRQEELKTLRGDGTGERQEWDRIYDYDVYNDLGAPDQKATLGRPVLGGSSTLPYPRRGRTGRKKTVKEPQSESRSDTVYLPRDEAFGHVKSSDFLVYILKSASQNIVPQLRSV-VTLQLNNPEFNTFEDVRSLYDGGIKLPTDVLSKI--SPIPLFSELFRSDGEAALKFPPPKVIQVDHS 364          
BLAST of FC931408 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.435e-42
Identity = 102/237 (43.04%), Postives = 134/237 (56.54%), Query Frame = 2
Query:    2 EMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAF--VDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLP-RLVKAIEDT-GDNILLFETPETMDRDNS 694
            E +LK + L+ + N G +   CNSW+++    K  R+FF N  Y+PS+TP  L  YR EEL  LRGNG GERK YDRIYDYDVYNDLG+PDK  +LARPVLGG    PYPRR RTGR    TD  +EK+   FYVPRDE    +K          S+   + P+ E+AF      + F  F  +  L+  G+ LP        +T++P  ++K +  T G +IL F  P  +    S
Sbjct:  106 EFFLKSLTLEAISNQGTIRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP----RDVISTIIPLPVIKELYRTDGQHILKFPQPHVVQVSQS 338          
BLAST of FC931408 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.180e-42
Identity = 97/232 (41.81%), Postives = 132/232 (56.90%), Query Frame = 2
Query:    2 EMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKR-----EGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLP--PLKQEGFWNTLLPRLVKAIEDTGDNILLFETP 670
            E +LK + L+ +PN G V+  CNSW++     K  R+FF N+ YLPS+TP+ L++YR  EL  LRG+G G+R+ +DRIYDYDVYNDLG+PD+  E  R  LGG  + PYPRR RTGRP   TD  SE R       + YVPRDE F  +K   F    + S++  ++P L   F      F  F  +  L+  G+ LP  PL +       L  + + +   G+ IL F TP
Sbjct:  120 EFFLKSLTLEDVPNHGKVHFVCNSWVYPSFRYKSDRIFFANQPYLPSETPELLRKYRENELVTLRGDGTGKREAWDRIYDYDVYNDLGNPDQGKENVRTTLGGSADYPYPRRGRTGRPPTRTDPKSESRIPLILSLDIYVPRDERFGHLKMSDFLTYALKSIVQFILPELHALFDGTPNEFDSFEDVLRLYEGGIKLPQGPLFKALTDAIPLEMIRELLRTDGEGILRFPTP 351          
BLAST of FC931408 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.180e-42
Identity = 96/232 (41.38%), Postives = 133/232 (57.33%), Query Frame = 2
Query:    2 EMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGK-QNPYPRRCRTGRPRCDTDQFSEKR-----EGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLP--PLKQEGFWNTLLPRLVKAIEDTGDNILLFETP 670
            E +LK + L+ +PN G V+  CNSW++   + K  R+FF N+ YLPS+TP+ L++YR  EL  LRG+G G+R+ +DRIYDYD+YNDLG+PD+  E  R  LGG  + PYPRR RTGRP   TD  SE R       + YVPRDE F  +K   F    + S++  ++P L   F      F  F  +  L+  G+ LP  PL +       L  + + +   G+ IL F TP
Sbjct:  121 EFFLKSLTLEDVPNHGKVHFVCNSWVYPSLNYKSDRIFFANQPYLPSETPELLRKYRENELLTLRGDGTGKREAWDRIYDYDIYNDLGNPDQGKENVRTTLGGSAEYPYPRRGRTGRPPTRTDPKSESRIPLILSLDIYVPRDERFGHLKMSDFLTYALKSIVQFILPELHALFDGTPNEFDSFEDVLRLYEGGIKLPQGPLFKALTAAIPLEMIRELLRTDGEGILRFPTP 352          
The following BLAST results are available for this feature:
BLAST of FC931408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX4_SOYBN9.552e-4744.92Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]
LOX6_ARATH8.087e-4641.39Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX22_HORVU8.087e-4646.70Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOX2_PEA1.992e-4444.68Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOX3_PEA4.437e-4442.86Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX3_SOYBN3.756e-4342.44Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX1_LENCU1.427e-4241.95Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]
LOX1_SOYBN2.435e-4243.04Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]
LOXA_SOLLC3.180e-4241.81Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX1_SOLTU3.180e-4241.38Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC34104G09EF PostHarvP1 Citrus clementina cDNA clone C34104G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931408 ID=FC931408; Name=FC931408; organism=Citrus clementina; type=EST; length=700bp
AGAGATGTATTTGAAAGATATTGTTCTTGATGGTTTGCCAAATGGTCCTG
TCAACGTAACATGTAATTCATGGCTTCACTCAAAGCACGACAATAAACAA
AAGAGAGTTTTCTTTACCAACAAGTTGTACTTGCCATCACAAACACCAGA
CGGATTGAAGAGATATAGAGCTGAGGAGCTTACCATTTTGCGAGGTAATG
GACAAGGAGAGCGCAAAACCTATGATAGAATCTATGATTATGATGTCTAC
AATGATCTTGGAGATCCAGACAAGAAACCTGAATTAGCAAGGCCTGTGCT
TGGAGGCAAACAAAACCCTTATCCTAGACGTTGCAGAACTGGACGCCCAC
GGTGTGACACAGATCAATTTTCGGAGAAAAGAGAGGGAAACTTTTATGTT
CCAAGGGATGAAGCATTCTCGGAGGTAAAGCAGCTAACATTTTCAGCAAA
GACGGTGTACTCAGTGTTGCATGCGTTGGTACCATCCTTAGAAACCGCCT
TTGTCGATCCTGATCTGGGGTTTCCATACTTCTCTGCTATTGACGCACTC
TTCAATGAAGGAGTCAACTTGCCTCCACTCAAACAGGAAGGTTTTTGGAA
CACACTGCTTCCCAGATTGGTTAAGGCAATTGAGGATACAGGAGATAATA
TTTTGCTGTTTGAGACGCCAGAAACAATGGACAGAGACAATTCTTTTGGT
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