FC931408

Overview
NameFC931408
Unique NameFC931408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:567..1266. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931408 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.084e-42
Identity = 99/230 (43.04%), Postives = 131/230 (56.96%), Query Frame = 2
Query:    2 EMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQ-NPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVD---PDLGFPYFSAIDALFNEGVNLPP--LKQEGFWNTLLPRLVKAIEDTGDNILLFETP 670
            E +L  + L+ +PN G +   CNSW+++    K+ R+FF N  YLPS TP  L +YR EEL +LRG+G G+RK +DRIYDYDVYNDLG+PD      RP+LGG    PYPRR RTGR R  TD  SEK  G  YVPRDE F  +K   F    + S+ H ++P  ++A          F  F  + +L+  G+ LP   L Q     + LP L +     G+N+L F  P
Sbjct:  132 EFFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYKKNRIFFVNDTYLPSATPAPLLKYRKEELEVLRGDGTGKRKDFDRIYDYDVYNDLGNPDGGD--PRPILGGSSIYPYPRRVRTGRERTRTDPNSEK-PGEVYVPRDENFGHLKSSDFLTYGIKSLSHDVIPLFKSAIFQLRVTSSEFESFEDVRSLYEGGIKLPTDILSQ----ISPLPALKEIFRTDGENVLQFPPP 354          
BLAST of FC931408 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.084e-42
Identity = 104/240 (43.33%), Postives = 137/240 (57.08%), Query Frame = 2
Query:    2 EMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQ-NPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLG-----FPYFSAIDALFNEGVNLPPLKQEGFWNTLLP-RLVKAIEDT-GDNILLFETPETMDRDNS 694
            E YLK + L+ +PN G +   CNSW+++    K  R+FF N  Y+PS+TP  L  YR EEL  LRG+G+GERK +DRIYDYDVYNDLG+PD     ARP+LGG   +PYPRR RTGR     DQ SEK  G  YVPRDE F  +K   F A  + S+   ++P+ E+ F   DL      F  F  +  L   G+ LP        +T++P  +VK +  T G+ +L F  P  +    S
Sbjct:  136 EFYLKSLTLEDVPNQGTIRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAALVGYREEELKNLRGDGKGERKEHDRIYDYDVYNDLGNPDHGENFARPILGGSSTHPYPRRGRTGRYPTRKDQNSEK-PGEVYVPRDENFGHLKSSDFLAYGIKSLSQYVLPAFESVF---DLNFTPNEFDSFQDVRDLHEGGIKLP----TEVISTIMPLPVVKELFRTDGEQVLKFPPPHVIQVSKS 367          
BLAST of FC931408 vs. ExPASy Swiss-Prot
Match: LOXB_SOLLC (Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.061e-41
Identity = 95/244 (38.93%), Postives = 137/244 (56.15%), Query Frame = 2
Query:    2 EMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGG-KQNPYPRRCRTGRPRCDTDQFSEKREG-----NFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFW-----NTLLPRLVKAIEDT-GDNILLFETPETMDRDNS 694
            E +LK + L+ +PN G ++  CNSW++     K  R+FF N+ YLPS+TP  L++YR  EL  LRG+G G+ + +DR+YDY  YNDLG+PDK  E ARP+LGG  + PYPRR RTGR     D   E R       + YVPRDE F  VK+  F   ++ S L  L+P+ +    +    F  F+ +  L+  G+ LP    EG W     + +   ++K I  T G  +L + TP+ +  D +
Sbjct:  119 EFFLKSLTLEDVPNYGKIHFVCNSWVYPAFRYKSDRIFFANQAYLPSETPQPLRKYRENELVALRGDGTGKLEEWDRVYDYACYNDLGEPDKGEEYARPILGGSSEYPYPRRGRTGREPTKADPNCESRNPLPMSLDIYVPRDERFGHVKKSDFLTSSLKSSLQTLLPAFKALCDNTPNEFNSFADVLNLYEGGIKLP----EGPWLKAITDNISSEILKDILQTDGQGLLKYPTPQVIQGDKT 358          
BLAST of FC931408 vs. ExPASy Swiss-Prot
Match: LOXA_PHAVU (Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.023e-40
Identity = 93/228 (40.79%), Postives = 129/228 (56.58%), Query Frame = 2
Query:    2 EMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETM 679
            E +L  + L+ +PN G ++  CNSW+++    K+ R+FF NK YLP++TP  L +YR EEL  LRG+G GERK YDRIYDY VYNDLG+PDK   LAR  LGG  + PYPRR RTGR     D   E    + Y+PRDE F  +K   F    + S+   ++P+ + AF   +  F  F  +  LF  G+ LP         + +P L + +   G+ +L F  P  +
Sbjct:  132 EFFLVSLTLEDIPNHGTIHFVCNSWVYNAKSYKRDRIFFANKTYLPNETPASLVKYRKEELENLRGDGTGERKEYDRIYDYAVYNDLGNPDKNKNLARTTLGGSSDFPYPRRGRTGRKSTRKDPKCEIPTSDTYIPRDENFGHLKSGDFLTYAIKSLTQNVLPTFQKAF-GFNNEFDTFEDVRGLFEGGLYLPTDVISKI--SPIPVLKEILRTDGEQVLKFPPPHVI 356          
BLAST of FC931408 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.477e-39
Identity = 97/240 (40.42%), Postives = 127/240 (52.92%), Query Frame = 2
Query:    2 EMYLKDIVLDGLP-NGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKR-----EGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLP--PLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDNS 694
            E  LK + L+ +P +G V+  CNSW++        RVFF+NK YLP +TP  L +YR EEL  LRG G+GE K +DR+YDY  YNDLG P K P   RPVLGG Q  PYPRR RTGR     D  +E R       + YVPRDE F  +K   F A  + ++   + P+LE  F D    F  F  +  ++ EG++LP   L      N  L  L +     G   L F  P+ +  D +
Sbjct:  122 EFLLKSLTLEDVPGHGRVHYICNSWIYPAKHYTTDRVFFSNKTYLPHETPATLLKYREEELVSLRGTGEGELKEWDRVYDYAYYNDLGVPPKNP---RPVLGGTQEYPYPRRGRTGRKPTKEDPQTESRLPITSSLDIYVPRDERFGHLKMSDFLAYALKAIAQFIQPALEAVFDDTPKEFDSFEDVLKIYEEGIDLPNQALIDSIVKNIPLEMLKEIFRTDGQKFLKFPVPQVIKEDKT 358          
BLAST of FC931408 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.786e-38
Identity = 96/244 (39.34%), Postives = 129/244 (52.87%), Query Frame = 2
Query:    2 EMYLKDIVLDGLPNGPVNVT-----CNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQ-GERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGK-QNPYPRRCRTGRPRCDTDQFSEKREG----NFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLP--RLVKAIEDTGDNILLFETPETMDRDNS 694
            + YLK + L G P+G    T     CNSW++  H  +  RVFF+NK YLPS+TP+ +K  R EEL  LRGN + GE K +DR+YDY  YNDLG PDK P+  RPVLGG  + PYPRR +TGR    +D  SE R      N YVPRDE FS VK   F A  + SV   LVP + +        F  F  +  L++  + L           ++P     + + + G+  L +  P+ +    S
Sbjct:  137 QFYLKSLTLRGFPDGEGGATAIHFICNSWIYPNHRYRSDRVFFSNKAYLPSETPELIKELREEELKNLRGNEKGGEFKEWDRVYDYAYYNDLGAPDKGPDSVRPVLGGSPELPYPRRGKTGRKSTKSDPKSESRLALLNLNIYVPRDERFSHVKFSDFLAYALKSVTQVLVPEIASVCDKTINEFDSFEDVFHLYDGSIKLANGHTISKLRDVIPWEMFRELVRNDGERFLKYPLPDILKESRS 380          
BLAST of FC931408 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.862e-37
Identity = 95/238 (39.92%), Postives = 128/238 (53.78%), Query Frame = 2
Query:    2 EMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQ-GERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKR----EGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLP-RLVKA-IEDTGDNILLFETPETMDRD 688
            E +LK + LDG+P  G V    NSW++   + + +RVFF N  YLPS+ P  L  YR EEL ILRG+G+ G  K +DRIY YD YNDLG PDK  +L RPVLGG Q  PYPRR RTGR    TD  +E R    + N YVPRDE F  +K   F   ++ +++  ++P + T        F  F  I  L+  G+ +            +P  L+K+ +   GD +L    P  +  D
Sbjct:  126 EFFLKTLTLDGVPGKGTVVFVANSWIYPADNYQYERVFFANDTYLPSKMPAPLIPYRQEELNILRGDGKIGPYKEHDRIYRYDYYNDLGQPDKGSKLVRPVLGGSQELPYPRRGRTGRAPTKTDPNTESRLPLLDLNIYVPRDERFGHLKMSDFLGYSLKAIVEGVLPIIRTYVDTTPKEFDSFQDIMELYEGGLKVANASALAEIKKRVPFELIKSLLPVAGDQVLKLPLPHVIKED 363          
BLAST of FC931408 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.163e-34
Identity = 97/239 (40.59%), Postives = 125/239 (52.30%), Query Frame = 2
Query:    2 EMYLKDIVLDGLPN--GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNG-QGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGK-QNPYPRRCRTGRPRCDTDQFSEKREG---NFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLG-FPYFSAIDALFNEGVNLP--PLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRD 688
            E +LK I LD +P   G V    NSW++     +  RVFF N  YLPSQ P  LK YR +EL  LRG+  QG  + +DR+Y YDVYNDLG PD      RP+LGG    PYPRR RTGR    TD  SE R       YVPRDE F  +K   F   ++ ++   +VP++ T +VD   G F  F  I  L+  G+ LP  P  +E      L  +   +   GD IL    P+ + +D
Sbjct:  121 EFFLKTITLDDVPGRAGAVVFLANSWVYPADKYRYDRVFFANDAYLPSQMPAALKPYRDDELRNLRGDDQQGPYEEHDRVYRYDVYNDLGSPDSGN--PRPILGGSPDTPYPRRGRTGRKPTTTDPDSESRLSLVEQIYVPRDERFGHLKMADFLGYSIKAIAEGIVPAIRT-YVDTTPGEFDSFQDILDLYEGGLKLPDVPALEELRKRFPLQLVKDLLPAAGDYILKLPMPQIIKQD 356          
BLAST of FC931408 vs. ExPASy Swiss-Prot
Match: LOX2_ORYSJ (Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.582e-33
Identity = 97/238 (40.76%), Postives = 128/238 (53.78%), Query Frame = 2
Query:    2 EMYLKDIVLDGLP-NGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNG-QGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGK-QNPYPRRCRTGRPRCDTDQFSEKREG---NFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLG-FPYFSAIDALFNEGVNLPPLKQEGFWNTLLP-RLVK-AIEDTGDNILLFETPETMDRD 688
            E +LK I LD +P +G V    NSW++     +  RVFF+N   LPS+ P  LK YR +EL  LRG+  QG  + +DR+Y YDVYNDLG+PD      RPVLGG    PYPRR RTGR    TD  +E R     N YVPRDE F  +K   F   ++ +++  +VP++ T +VD   G F  F  I  L+  G+ LP +          P +LVK  I   GD +L    P  +  D
Sbjct:  119 EFFLKTITLDNVPGHGAVVFVANSWIYPASKYRYNRVFFSNDTSLPSKMPAALKPYRDDELRNLRGDDQQGPYQEHDRVYRYDVYNDLGEPDSGN--PRPVLGGSPDRPYPRRGRTGRKPTKTDPTAESRLSLLENIYVPRDERFGHLKMADFLGYSIKALVDGIVPAIRT-YVDLTPGEFDSFKDILKLYEGGLKLPSIPALEELRKRFPLQLVKDLIPAGGDYLLKLPMPHVIRED 353          
BLAST of FC931408 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 6.646e-32
Identity = 91/233 (39.06%), Postives = 129/233 (55.36%), Query Frame = 2
Query:    2 EMYLKDIVLDGLPNGPVNV-TCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRG-NGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQ-NPYPRRCRTGRPRCDTDQFSEKREG---NFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLG-FPYFSAIDALFNEGVNLPPLKQ-EGFWNTLLPRLVKAIEDTGDNILL-FETPE 673
            + +LK I L  +P     V   NSW++        R+FF N  YLPSQ P+ L+ YR +EL  LRG + QG  + +DRIY YDVYNDLG+PD+  +  RPVLGG Q +PYPRR RTGR     D  SE R       YVP DE F+ +K   F+  ++ +++  ++P++ T +VD   G F  F  I  L+  G+ LP +   E    +   +L+K +   G + LL F  P+
Sbjct:  119 KFFLKTITLHDVPGCDTIVFVANSWIYPVGKYHYNRIFFANNSYLPSQMPEALRPYREDELRYLRGEDRQGPYQEHDRIYRYDVYNDLGEPDR--DNPRPVLGGSQKHPYPRRGRTGRIPTKKDPNSESRLSLLEQIYVPSDERFAHLKMSDFAGYSIKAIVQGILPAIRT-YVDLTPGEFDSFEDILKLYRGGLKLPSIPALEELRKSFPVQLIKDLLPVGGSYLLKFPKPD 348          
The following BLAST results are available for this feature:
BLAST of FC931408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOXX_SOYBN7.084e-4243.04Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOX2_SOYBN7.084e-4243.33Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]
LOXB_SOLLC2.061e-4138.93Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 P... [more]
LOXA_PHAVU1.023e-4040.79Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 ... [more]
LOX1_ARATH1.477e-3940.42Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOX5_ARATH2.786e-3839.34Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOX4_ORYSJ6.862e-3739.92Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]
LOX3_ORYSJ4.163e-3440.59Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]
LOX2_ORYSJ1.582e-3340.76Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=... [more]
LOX1_ORYSJ6.646e-3239.06Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34104G09EF PostHarvP1 Citrus clementina cDNA clone C34104G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931408 ID=FC931408; Name=FC931408; organism=Citrus clementina; type=EST; length=700bp
AGAGATGTATTTGAAAGATATTGTTCTTGATGGTTTGCCAAATGGTCCTG
TCAACGTAACATGTAATTCATGGCTTCACTCAAAGCACGACAATAAACAA
AAGAGAGTTTTCTTTACCAACAAGTTGTACTTGCCATCACAAACACCAGA
CGGATTGAAGAGATATAGAGCTGAGGAGCTTACCATTTTGCGAGGTAATG
GACAAGGAGAGCGCAAAACCTATGATAGAATCTATGATTATGATGTCTAC
AATGATCTTGGAGATCCAGACAAGAAACCTGAATTAGCAAGGCCTGTGCT
TGGAGGCAAACAAAACCCTTATCCTAGACGTTGCAGAACTGGACGCCCAC
GGTGTGACACAGATCAATTTTCGGAGAAAAGAGAGGGAAACTTTTATGTT
CCAAGGGATGAAGCATTCTCGGAGGTAAAGCAGCTAACATTTTCAGCAAA
GACGGTGTACTCAGTGTTGCATGCGTTGGTACCATCCTTAGAAACCGCCT
TTGTCGATCCTGATCTGGGGTTTCCATACTTCTCTGCTATTGACGCACTC
TTCAATGAAGGAGTCAACTTGCCTCCACTCAAACAGGAAGGTTTTTGGAA
CACACTGCTTCCCAGATTGGTTAAGGCAATTGAGGATACAGGAGATAATA
TTTTGCTGTTTGAGACGCCAGAAACAATGGACAGAGACAATTCTTTTGGT
back to top