FC931408

Overview
NameFC931408
Unique NameFC931408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:567..1266. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC931408 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 8.982e-29
Identity = 88/228 (38.60%), Postives = 119/228 (52.19%), Query Frame = 2 
Query:    2 EMYLKDIVLDGLPNGPVNVT--CNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNG-QGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGG-KQNPYPRRCRTGRPRCDTDQFSEKREG---NFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLG-FPYFSAIDALFNEGVNLPPLKQEGFWNTLLP-RLVKAIEDTGDNILL 658
            E  LK I L  +P    N+T   NSW++   + +  RVFF N  YLPSQ P  LK YR +EL  LRG+  QG  + +DRIY YDVYNDLG+        RP+LGG   +PYPRR RT R    +D   E R       YVPRDE F  +K   F   ++ ++   ++P++ T +VD   G F  F  I  L+  G+ LP +          P +L+K +   G + LL
Sbjct:  121 EFLLKTITLHDVPGRSGNLTFVANSWIYPAANYRYSRVFFANDTYLPSQMPAALKPYRDDELRNLRGDDQQGPYQEHDRIYRYDVYNDLGE-------GRPILGGNSDHPYPRRGRTERKPNASDPSLESRLSLLEQIYVPRDEKFGHLKTSDFLGYSIKAITQGILPAVRT-YVDTTPGEFDSFQDIINLYEGGIKLPKVAALEELRKQFPLQLIKDLLPVGGDSLL 340
The following BLAST results are available for this feature:
BLAST of FC931408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX1_HORVU8.982e-2938.60Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionC34104G09EF PostHarvP1 Citrus clementina cDNA clone C34104G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931408 ID=FC931408; Name=FC931408; organism=Citrus clementina; type=EST; length=700bp
AGAGATGTATTTGAAAGATATTGTTCTTGATGGTTTGCCAAATGGTCCTG
TCAACGTAACATGTAATTCATGGCTTCACTCAAAGCACGACAATAAACAA
AAGAGAGTTTTCTTTACCAACAAGTTGTACTTGCCATCACAAACACCAGA
CGGATTGAAGAGATATAGAGCTGAGGAGCTTACCATTTTGCGAGGTAATG
GACAAGGAGAGCGCAAAACCTATGATAGAATCTATGATTATGATGTCTAC
AATGATCTTGGAGATCCAGACAAGAAACCTGAATTAGCAAGGCCTGTGCT
TGGAGGCAAACAAAACCCTTATCCTAGACGTTGCAGAACTGGACGCCCAC
GGTGTGACACAGATCAATTTTCGGAGAAAAGAGAGGGAAACTTTTATGTT
CCAAGGGATGAAGCATTCTCGGAGGTAAAGCAGCTAACATTTTCAGCAAA
GACGGTGTACTCAGTGTTGCATGCGTTGGTACCATCCTTAGAAACCGCCT
TTGTCGATCCTGATCTGGGGTTTCCATACTTCTCTGCTATTGACGCACTC
TTCAATGAAGGAGTCAACTTGCCTCCACTCAAACAGGAAGGTTTTTGGAA
CACACTGCTTCCCAGATTGGTTAAGGCAATTGAGGATACAGGAGATAATA
TTTTGCTGTTTGAGACGCCAGAAACAATGGACAGAGACAATTCTTTTGGT
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