FC931412

Overview
NameFC931412
Unique NameFC931412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15297 contig Ccv1_Contig15297:1..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: GHC2_MOUSE (Mitochondrial glutamate carrier 2 OS=Mus musculus GN=Slc25a18 PE=2 SV=4)

HSP 1 Score: 78.1814 bits (191), Expect = 5.202e-14
Identity = 70/264 (26.52%), Postives = 112/264 (42.42%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXF----VYSLDYARTRLANDAKSSKGSGERQFN----------GLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLVGPLEG--SFLASFLLGWTVTTGAGVASYPLDTVRRRMMMTS---GEAVKYSSSLDAAR 736
            GG++  V  T   PI+  K  +QNQ     QG+    Y G+ DC  +TA AEG + ++RG   N+    P +A+  A  D  + +      +      M+                    +   D  R  + + A +S     R ++              + R+ L + G++GLYRG G ++L  + +  +YF ++ ++   L V  L G  SF  SF+ G T  + A VA  PLD ++ R+       GE   YS   D AR
Sbjct:   20 GGIAGLVGVTCVFPIDLAKTRLQNQ-----QGK--DVYRGMTDCLMKTARAEGFLGMYRGAAVNLTLVTPEKAIKLAANDFLRQLLMQDGTQRNLKMEMLAGCGAGICQVVITCPMEMLKIQLQDAGRLAVCHQASASATPTSRPYSTGSTSTHRRPSATLIARELLRTQGLSGLYRGLGATLLRDIPFSIIYFPLFANLNQ-LGVSELTGKASFTHSFVAGCTAGSVAAVAVTPLDVLKTRIQTLKKGLGEDT-YSGVTDCAR 274          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: TPC1_YARLI (Mitochondrial thiamine pyrophosphate carrier 1 OS=Yarrowia lipolytica GN=TPC1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.873e-14
Identity = 68/253 (26.88%), Postives = 105/253 (41.50%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFA-FRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXX----FVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVL-LVGPLEGSFLASFLL---GWTVTTG---AGVAS----YPLDTVRRRMMMTSGEAVKY 712
            GG++  VS+   AP++ +K+ +Q Q    K G   R Y GI    ++    EGV +LW+GN    + Y    A  F  +    + + AY +  +   KW +                     Y  D  RT  A  A+ +K    + +  L   ++    ++G  G +RG   S++ I  Y GL+F  Y  +K  L          L S+ L   GW   T    AG AS    +PLDT+R+R+       V Y
Sbjct:   20 GGIAGMVSRFCIAPLDVVKIRLQLQ----KDG--SRYYRGIFQTMQQIVRDEGVTALWKGNIPAELLYVFYGATQFVTYHHVNQVINAYNETAE---KWKISSGAQSFIAGATAGAGATIATYPFDLFRTLFA--AQGAKNCNVKNYTSLFQTFKLIYKTEGPLGFFRGVSSSIISIAPYMGLFFASYGRVKDSLDAFSNKHHDLLVSYNLPTKGWQEATAGLCAGTASKALVFPLDTIRKRLQTQGRMDVSY 261          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: TPC1_ASPFU (Mitochondrial thiamine pyrophosphate carrier 1 OS=Aspergillus fumigatus GN=tpc1 PE=3 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.159e-13
Identity = 71/237 (29.96%), Postives = 106/237 (44.73%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRK-----YNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNF-AFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVL--LVGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRMMM 688
            GG++  VS+   AP++ +K+ +Q Q   L             Y G     R     EG+  LW+GN    + Y    AL F A+R T + +      R   A   +                 Y LD  RTR A     ++G+ ER +  L+   R    S+G AG +RG   +V  IV Y GL+F  Y+S++PVL  L     GS  A+  +  +V   +GV  +PLD VR+R+ +
Sbjct:   21 GGIAGLVSRFCVAPLDVVKIRLQLQIHSLSDPASHHDVVGPIYKGTLSTMRTIIKQEGITGLWKGNIPAELMYVCYGALQFTAYRTTTQILAQLDPHRLPPA---LESFVSGAVAGGLATASTYPLDLLRTRFA-----AQGT-ERIYTSLLASVRDIARSEGPAGFFRGCSAAVGQIVPYMGLFFATYESLRPVLSGLENMPFGSGDAAAGVIASVLAKSGV--FPLDLVRKRLQV 246          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: TPC1_PICGU (Mitochondrial thiamine pyrophosphate carrier 1 OS=Pichia guilliermondii GN=TPC1 PE=3 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.513e-13
Identity = 61/234 (26.07%), Postives = 99/234 (42.31%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFV-YSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLVGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRMMMTSGE 700
            G VS AV++   AP++ +K+ +Q  ++ L        ++G+     R    EG+ + W+GN    I Y    A  F     +       +   G+                     V Y  D  RTRLA        + ER F  +  V ++  AS G+AGLY G  P++L + +  GL F  Y+  + V         F+  F   +   +  G+ ++PLDT+R+RM M S +
Sbjct:   24 GSVSGAVARAVTAPLDTVKIRLQLSNKSLGA------HDGLRQTVVRIFKNEGIRAFWKGNVPAEIMYILYGATQFTSYSMFSKALTELETTYGFNLRPSNHSLIVGTSAGLTSLIVTYPFDLLRTRLA-------ANSERHFLSMTAVIKQVRASGGLAGLYMGAKPTLLSLGLNSGLMFWTYEIAREVSAQYKDNIPFIEGFCGFFAGASSKGI-TFPLDTLRKRMQMRSSK 243          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: S2541_BOVIN (Solute carrier family 25 member 41 OS=Bos taurus GN=SLC25A41 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.513e-13
Identity = 61/230 (26.52%), Postives = 104/230 (45.22%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLVG---PLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRM 682
            G ++ AVS+T  AP++R K+ +Q            + +  +    R      G+ SLWRGN  NV++  P  A+ F+  +  K+ F    +   + + ++                +  ++  +TRL     + + +G  Q+ GL+D  R+ L  +G   LYRG+ P++LGI+ Y      +Y+ +  + L       + S L S       TT   +ASYPL  VR RM
Sbjct:   97 GAMAGAVSRTGTAPLDRAKVYMQVYSSK-------KNFMNLLGGLRSLIQEGGIRSLWRGNGINVLKIAPEYAIKFSVFEQCKNYFCGVHESPPFQERLLAGSLAVATSQT----LINPMEVLKTRL-----TLRRTG--QYKGLLDCARQILEQEGTRALYRGYLPNMLGIIPYACTDLAVYEMLNCLWLKSGRDMKDPSGLVSLSSVTLSTTCGQMASYPLTLVRTRM 308          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: TPC1_NEOFI (Mitochondrial thiamine pyrophosphate carrier 1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=tpc1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.582e-13
Identity = 70/237 (29.54%), Postives = 106/237 (44.73%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRK-----YNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNF-AFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVL--LVGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRMMM 688
            GG++  VS+   AP++ +K+ +Q Q   L      R      Y G     R     EG+  LW+GN    + Y    AL F A+R T + +      R   A   +                 Y LD  RTR A     ++G+ ER +  L+   +    ++G AG +RG   +V  IV Y GL+F  Y+S++PVL  L     GS  A+  +  +V    GV  +PLD VR+R+ +
Sbjct:   21 GGIAGLVSRFCVAPLDVVKIRLQLQIHSLSDPASHRDVVGPIYKGTLSTMRAIIKQEGITGLWKGNIPAELMYVCYGALQFTAYRTTTQVLAQLDPHRLPPA---LESFVSGAVAGGLATASTYPLDLLRTRFA-----AQGT-ERIYTSLLASVQDIARNEGPAGFFRGCSAAVGQIVPYMGLFFATYESLRPVLSGLENMPFGSGDAAAGVIASVLAKTGV--FPLDLVRKRLQV 246          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: TPC1_LODEL (Mitochondrial thiamine pyrophosphate carrier 1 OS=Lodderomyces elongisporus GN=TPC1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.281e-12
Identity = 68/249 (27.31%), Postives = 109/249 (43.78%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDR--KYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFA-FRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLL----VGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRMMMTSG-EAVKYSSSL 724
            G VS  V++   AP++ IK+ +Q Q +  K     +    N + D  +     EGV++LW+GN    I Y    A+ F  +    KS+   +KD        +                 Y  D  RTRL  + K +  S       +   +RK L ++GI+GL+ G  P+++ +    GL F  Y+  +        V  +EG  +  F+ G    T  G+ ++PLDT+R+R  + S     KY SSL
Sbjct:   25 GSVSGGVARAITAPLDTIKIRLQLQTKSHKHPHTQKVSALNVVKDLLKN----EGVIALWKGNVPAEILYVMYGAVQFTTYSALSKSLSQMEKDYSIVMPSSVHSLLAGVGAGIASTLTTYPFDLLRTRLVANKKKNLLS-------MTGTFRKILHAEGISGLFAGIRPAMISVASTTGLMFWSYELAREFSSEYKHVPFIEG--ICGFVAG---ATSKGI-TFPLDTLRKRCQIYSEVYGTKYKSSL 256          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: TPC1_ASPTN (Mitochondrial thiamine pyrophosphate carrier 1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tpc1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.281e-12
Identity = 67/246 (27.24%), Postives = 98/246 (39.84%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRK-----YNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVL-LVGPL---EGSFLASFLLGWTVTTGAGVASYPLDTVRRRMMMTSGEAVKY 712
            GG++  VS+   AP++ +K+ +Q Q   L      R      Y G     R     EG+  LW+GN    + Y     + F    T     A    R       +                 Y LD  RTR A     ++G+ ER +  L+   R     +G AG +RG   +V  IV Y GL+F  Y+S++P L  V  L    G  LA  +      TG     +PLD VR+R+ +      +Y
Sbjct:   21 GGIAGLVSRFCVAPLDVVKIRLQLQIHSLSDPSSHRNVSGPIYKGTISTMRAIIREEGITGLWKGNIPAELMYVCYGGVQFTTYRTTTQALAQLPHR---LPQPVESFVAGASAGGLATAATYPLDLLRTRFA-----AQGT-ERVYTSLLASVRDIARIEGPAGFFRGCSAAVGQIVPYMGLFFATYESLRPSLATVQDLPFGSGDALAGMIASVLAKTGV----FPLDLVRKRLQVQGPTRSRY 253          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: TPC1_ASPOR (Mitochondrial thiamine pyrophosphate carrier 1 OS=Aspergillus oryzae GN=tpc1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 69/245 (28.16%), Postives = 103/245 (42.04%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQ-----DEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYA-KWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVL--LVGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRMMMTSGEAVKY 712
            GG++  VS+   AP++ +K+ +Q Q     D    Q      Y G     R     EG+  LW+GN    + Y    A+ FA    Y++        D Y                       Y LD  RTR A     ++G+ ER +  L    R    ++G  G +RG   +V  IV Y GL+F  Y+S++PV+  L     GS  A+  +  +V    GV  +PLD VR+R+ +      KY
Sbjct:   21 GGIAGLVSRFCVAPLDVVKIRLQLQIHSLSDPTSHQNIKGPVYKGTLPTIRSIVREEGITGLWKGNIPAELMYVCYGAIQFA---AYRTTTQALSQLDPYRLPPPAESFVAGATAGGLATASTYPLDLLRTRFA-----AQGT-ERVYTSLYASVRDIAQNEGPKGFFRGCSAAVGQIVPYMGLFFATYESLRPVMSGLHDLPFGSGDAAAGVVASVLAKTGV--FPLDLVRKRLQVQGPTRSKY 254          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: GHC2_RAT (Mitochondrial glutamate carrier 2 OS=Rattus norvegicus GN=Slc25a18 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 62/243 (25.51%), Postives = 104/243 (42.80%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXF----VYSLDYARTRLANDAKSSKGSGERQFN-GLVDVYRK---------TLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLVGPLEG--SFLASFLLGWTVTTGAGVASYPLDTVRRRM 682
            GG++  V  T   PI+  K  +QNQ     QG+    Y G+ DC  +TA AEG + ++RG   N+    P +A+  A  D  + +      +      M+                    +   D  R  +   A +S     R ++ G    +R+          L + G++GLYRG G ++L  + +  +YF ++ ++   L V  L G  SF  SF+ G    + + VA  PLD ++ R+
Sbjct:   20 GGIAGLVGVTCVFPIDLAKTRLQNQ-----QGK--DVYKGMTDCLVKTARAEGFLGMYRGAAVNLTLVTPEKAIKLAANDFLRQLLMQDGTQRNLKMEMLAGCGAGICQVVITCPMEMLKIQLQDAGRLAVCQQASASATPTSRPYSTGSTSTHRRPSATLIAWELLRTQGLSGLYRGLGATLLRDIPFSIIYFPLFANLNQ-LGVSELTGKASFTHSFVAGCAAGSVSAVAVTPLDVLKTRI 254          
The following BLAST results are available for this feature:
BLAST of FC931412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
GHC2_MOUSE5.202e-1426.52Mitochondrial glutamate carrier 2 OS=Mus musculus ... [more]
TPC1_YARLI8.873e-1426.88Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
TPC1_ASPFU1.159e-1329.96Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
TPC1_PICGU1.513e-1326.07Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
S2541_BOVIN1.513e-1326.52Solute carrier family 25 member 41 OS=Bos taurus G... [more]
TPC1_NEOFI2.582e-1329.54Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
TPC1_LODEL1.281e-1227.31Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
TPC1_ASPTN1.281e-1227.24Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
TPC1_ASPOR2.854e-1228.16Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
GHC2_RAT2.854e-1225.51Mitochondrial glutamate carrier 2 OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionC34104H01EF PostHarvP1 Citrus clementina cDNA clone C34104H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931412 ID=FC931412; Name=FC931412; organism=Citrus clementina; type=EST; length=736bp
GGGTGGTGTCTCCGCCGCTGTCTCTAAGACCGCTGCTGCCCCCATTGAGC
GTATCAAGCTCCTGATCCAGAACCAGGATGAGATGCTCAAGCAGGGTCGC
CTCGACCGCAAGTACAACGGTATTGCTGACTGCTTCCGCCGTACCGCCGC
CGCTGAGGGTGTTGTCTCCTTGTGGCGTGGTAACACCGCCAACGTCATCC
GTTACTTCCCCACTCAGGCCCTGAACTTCGCTTTCCGCGACACCTACAAG
TCCATGTTCGCCTACAAGAAGGACCGTGATGGATACGCCAAGTGGATGAT
GGGTAACCTTGCCTCCGGTGGTGCCGCCGGTGCCACTTCCCTCCTGTTCG
TCTACTCCCTGGACTACGCCCGTACCCGTCTGGCCAACGATGCCAAGTCC
TCCAAGGGCTCCGGTGAGCGCCAGTTCAACGGTCTCGTCGATGTTTACCG
CAAGACCCTCGCCTCCGACGGTATTGCCGGTCTCTACCGTGGCTTCGGTC
CCTCCGTTCTCGGAATTGTCGTCTACCGTGGTCTCTACTTCGGAATGTAC
GATTCCATCAAGCCCGTCCTCCTCGTTGGTCCTCTTGAGGGCTCTTTCCT
CGCCTCCTTCCTGCTCGGCTGGACCGTCACCACCGGTGCCGGTGTTGCCT
CTTACCCTCTTGACACCGTTCGCCGTCGCATGATGATGACCTCTGGTGAG
GCCGTCAAGTACTCCAGCTCCCTGGATGCTGCCCGC
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