FC931412

Overview
NameFC931412
Unique NameFC931412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15297 contig Ccv1_Contig15297:1..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: TPC1_PICST (Mitochondrial thiamine pyrophosphate carrier 1 OS=Pichia stipitis GN=TPC1 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 59/233 (25.32%), Postives = 97/233 (41.63%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFV-YSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLVGPLEGSF---LASFLLGWTVTTGAGVASYPLDTVRRRMMM 688
            G +S AV++   AP++ IK+ +Q Q          R    +    +     EG ++LW+GN    I Y    A  F    +     ++  D  G+                     V Y  D  RTRLA        + E++   +    R+ ++S+G  GL+ G  P++L I    GL F  Y+ ++  L  G  +  F   +  F+ G    T  G+ ++PLDT+R+R  M
Sbjct:   25 GSISGAVARAVTAPLDTIKIRLQLQRSAF------RSRVSVTTVVKDLLKNEGAIALWKGNVPAEILYVLYGAAQFTTYSSISRWLSHLSDTSGFNLPSSAHSLVSGTGAGVVSTLVTYPFDLLRTRLA-------ANSEKKLLSMSGTAREIISSEGFTGLFAGIKPAMLSISTTTGLMFWSYELVRETL--GDRDIPFKEGICGFIAG---ATSKGI-TFPLDTIRKRTQM 238          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: S2541_HUMAN (Solute carrier family 25 member 41 OS=Homo sapiens GN=SLC25A41 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 59/230 (25.65%), Postives = 102/230 (44.35%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLVGPL---EGSFLASFLLGWTVTTGAGVASYPLDTVRRRM 682
            G ++ AVS+T  AP++R K+ +Q              +  +    +      G  SLWRGN  NV++  P  A+ F+  +  K+ F   +    + + ++                +  ++  +TRL     + + +G  Q+ GL+D  R+ L  +G   LYRG+ P++LGI+ Y      +Y+ ++   +       + S L S       TT   +ASYPL  VR RM
Sbjct:   99 GAMAGAVSRTGTAPLDRAKVYMQVYSSKTN-------FTNLLGGLQSMVQEGGFRSLWRGNGINVLKIAPEYAIKFSVFEQCKNYFCGIQGSPPFQERLLAGSLAVAISQT----LINPMEVLKTRL-----TLRRTG--QYKGLLDCARQILQREGTRALYRGYLPNMLGIIPYACTDLAVYEMLQCFWVKSGRDMGDPSGLVSLSSVTLSTTCGQMASYPLTLVRTRM 310          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: TPC1_EMENI (Mitochondrial thiamine pyrophosphate carrier 1 OS=Emericella nidulans GN=tpc1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.416e-11
Identity = 60/245 (24.49%), Postives = 97/245 (39.59%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRK-----YNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYA-KWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGE-RQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLVGPL---------EGSFLASFLLGWTVTTGAGVASYPLDTVRRRMMM 688
            GG++  +S+   AP++ +K+ +Q Q   L             Y G     +     EG+  LW+GN    + Y     + F    TY++        D +     +                 Y LD  RTR A     ++GSG+ R +  L    R    ++G  G +RG   +V  IV Y GL+F  Y++++PV+   P           G   A  +      TG     +PLD VR+R+ +
Sbjct:   21 GGIAGLISRFCIAPLDVVKIRLQLQIHSLSDPTSHAHITGPVYKGTLSTIKTILREEGLTGLWKGNIPAELLYVCYGGIQFT---TYRTTTQLLAQLDPHRLPQPIESFISGALGGGIATAATYPLDLLRTRFA-----AQGSGDNRVYESLFASLRDIAKTEGTVGFFRGCSAAVGQIVPYMGLFFATYEALRPVMATAPELSPIPLPPGSGDAAAGIVASVLAKTGV----FPLDLVRKRLQV 253          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: TPC1_ASPNC (Mitochondrial thiamine pyrophosphate carrier 1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tpc1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.122e-11
Identity = 58/235 (24.68%), Postives = 96/235 (40.85%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRK-----YNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNF-AFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLVGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRMMM 688
            GG++  VS+   AP++ +K+ +Q Q   L      R      Y G     R     EG+  LW+GN    + Y     + F A+R T +++      R                         Y LD  RTR A     ++G+ +R +  L+   R    ++G AG +RG   +V  IV Y GL+F  Y++++P L               G   +  +    +PLD +R+R+ +
Sbjct:   21 GGIAGLVSRFCVAPLDVVKIRLQLQIHSLSDPISHRDVTGPIYKGTLSTMRDIIRQEGITGLWKGNIPAELMYVCYGVIQFSAYRTTTQALAQLDTYR---LPPSAESFVAGATAGGLATASTYPLDLLRTRFA-----AQGT-DRVYTSLMSSVRDIARNEGYAGFFRGCSAAVGQIVPYMGLFFATYEALRPPLAQYQDLPFGSGDAAAGVIASVSSKTVMFPLDLIRKRLQV 246          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: YIKC_SCHPO (Uncharacterized mitochondrial carrier PB17E12.12c OS=Schizosaccharomyces pombe GN=SPAPB17E12.12c PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 64/241 (26.56%), Postives = 100/241 (41.49%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDA---KSSKGSGERQFNGLVDVYRKTLAS---------DGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLVGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRMMM 688
            GGV+A VS+TA +P+ER+K++ Q Q+        +++Y  +     +    EG++  +RGN  N +R FP  A+ FA  +  K      K+R                         Y LD ARTRL+ +     S   +     N  + V   TL S          G   LY G   ++L +V Y  + F  ++  K          +F   FL G+T   G    ++P D +RRR  +
Sbjct:   27 GGVAATVSRTAVSPLERMKIIFQVQN--------NKEYTSLTSTLVKIWNREGLIGFFRGNGTNCLRAFPYGAVQFATFNMLKQRAL--KNRSHQNLENHERLLFGAIAGAASCATTYPLDIARTRLSIETAGLTSRSLAINNVANNSLKVKPLTLWSTLLYIVQHEGGYPALYNGLPATLLNVVPYVSICFFTFEFCKQKFFSNADLTAFQKLFLGGFTGIIGQ-TLTFPADVLRRRFQV 256          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: TPC_HUMAN (Mitochondrial thiamine pyrophosphate carrier OS=Homo sapiens GN=SLC25A19 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 66/261 (25.29%), Postives = 103/261 (39.46%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLVG-PLEG---SFLASFLLGWTVTTGAGVAS----YPLDTVRRRMMM--------TSGEAVKYSSSLDAAR 736
            G VS  V++   +P + IK+  Q Q E L +     KY+GI    R+    EG  + W+G+    I      A+ F   +    +       D  A+                   V+ +D  RTR A   +       + +N L         S+G    Y+G  P+++ I  Y GL F  Y S+K +     P EG     L + L G    +GAGV S    YPLD  ++R+ +          G+  +Y   +D A+
Sbjct:   22 GSVSGLVTRALISPFDVIKIRFQLQHERLSRSDPSAKYHGILQASRQILQEEGPTAFWKGHVPAQILSIGYGAVQFLSFEMLTELVHRGSVYD--AREFSVHFVCGGLAACMATLTVHPVDVLRTRFAAQGEP------KVYNTLRHAVGTMYRSEGPQVFYKGLAPTLIAIFPYAGLQFSCYSSLKHLYKWAIPAEGKKNENLQNLLCG----SGAGVISKTLTYPLDLFKKRLQVGGFEHARAAFGQVRRYKGLMDCAK 270          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: TPC_BOVIN (Mitochondrial thiamine pyrophosphate carrier OS=Bos taurus GN=SLC25A19 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 64/257 (24.90%), Postives = 102/257 (39.69%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVL-LVGPLEGSFLASFLLGWTVTTGAGVAS----YPLDTVRRRMMM--------TSGEAVKYSSSLDAA 733
            G VS  V++   +P++ IK+  Q Q E L +   + KY+GI    R+    EG  + W+G+    +      A+ F   +    +      RD  A+                   V+ +D  RTR A   +       R +  L D       ++G    Y+G  P+++ I  Y G  F +Y S+K       P EG    +F       +GAGV S    YPLD  ++R+ +        + G+   Y   LD A
Sbjct:   22 GSVSGLVTRVLISPLDVIKIRFQLQIERLSRSDPNAKYHGILQAGRQILQEEGPTAFWKGHIPAQLLSIGYGAVQFLSFEALTELVHRASVRD--ARDFSVHFLCGGLSACVATLAVHPVDVLRTRFAAQGE------PRVYKTLRDAVVTMYRTEGPLVFYKGLNPTLIAIFPYAGFQFSIYSSLKRAYEWALPAEGKKNGNF-KNLLCGSGAGVISKTLTYPLDLFKKRLQVGGFEQARASFGQVRSYKGLLDCA 269          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: TPC1_BOTFB (Mitochondrial thiamine pyrophosphate carrier 1 OS=Botryotinia fuckeliana (strain B05.10) GN=tpc1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 60/246 (24.39%), Postives = 96/246 (39.02%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRK------YNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKW--MMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLVGPLEGSF-LASFLLGWTVTTGAGVASYPLDTVRRRMMMTSGEAVKY 712
            G  +  +++   AP++ +K+ +Q Q          R       Y G     +R    EG+ +LW+GN    + Y    A+ F    TY+S+    +D  G  +                      Y LD  RTR A          ER +  L    R    S+G  G ++G G  V  IV Y G++F  Y+S++  L +G L   F  A    G   +  A    +P D +R+R+ +      +Y
Sbjct:   21 GATAGLIARFVIAPLDVVKIRLQLQSHSASDPLSQRDLRGSPIYKGTIPTIKRIFREEGLAALWKGNVPAELMYVSYSAIQFT---TYRSVTLGLQDAFGEHRLPAAAESFIAGASAGAVATTATYPLDLLRTRFAAQGI------ERVYTSLRSSIRDIAISEGPRGFFQGLGAGVGQIVPYMGIFFATYESLR--LPMGTLNMPFGSADASAGVIASVIAKTGIFPFDLIRKRLQVQGPTRERY 255          
The following BLAST results are available for this feature:
BLAST of FC931412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
TPC1_PICST3.728e-1225.32Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
S2541_HUMAN8.305e-1225.65Solute carrier family 25 member 41 OS=Homo sapiens... [more]
TPC1_EMENI2.416e-1124.49Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
TPC1_ASPNC4.122e-1124.68Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
YIKC_SCHPO9.182e-1126.56Uncharacterized mitochondrial carrier PB17E12.12c ... [more]
TPC_HUMAN9.182e-1125.29Mitochondrial thiamine pyrophosphate carrier OS=Ho... [more]
TPC_BOVIN9.182e-1124.90Mitochondrial thiamine pyrophosphate carrier OS=Bo... [more]
TPC1_BOTFB9.182e-1124.39Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34104H01EF PostHarvP1 Citrus clementina cDNA clone C34104H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931412 ID=FC931412; Name=FC931412; organism=Citrus clementina; type=EST; length=736bp
GGGTGGTGTCTCCGCCGCTGTCTCTAAGACCGCTGCTGCCCCCATTGAGC
GTATCAAGCTCCTGATCCAGAACCAGGATGAGATGCTCAAGCAGGGTCGC
CTCGACCGCAAGTACAACGGTATTGCTGACTGCTTCCGCCGTACCGCCGC
CGCTGAGGGTGTTGTCTCCTTGTGGCGTGGTAACACCGCCAACGTCATCC
GTTACTTCCCCACTCAGGCCCTGAACTTCGCTTTCCGCGACACCTACAAG
TCCATGTTCGCCTACAAGAAGGACCGTGATGGATACGCCAAGTGGATGAT
GGGTAACCTTGCCTCCGGTGGTGCCGCCGGTGCCACTTCCCTCCTGTTCG
TCTACTCCCTGGACTACGCCCGTACCCGTCTGGCCAACGATGCCAAGTCC
TCCAAGGGCTCCGGTGAGCGCCAGTTCAACGGTCTCGTCGATGTTTACCG
CAAGACCCTCGCCTCCGACGGTATTGCCGGTCTCTACCGTGGCTTCGGTC
CCTCCGTTCTCGGAATTGTCGTCTACCGTGGTCTCTACTTCGGAATGTAC
GATTCCATCAAGCCCGTCCTCCTCGTTGGTCCTCTTGAGGGCTCTTTCCT
CGCCTCCTTCCTGCTCGGCTGGACCGTCACCACCGGTGCCGGTGTTGCCT
CTTACCCTCTTGACACCGTTCGCCGTCGCATGATGATGACCTCTGGTGAG
GCCGTCAAGTACTCCAGCTCCCTGGATGCTGCCCGC
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