FC931414

Overview
NameFC931414
Unique NameFC931414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.120e-30
Identity = 69/110 (62.73%), Postives = 78/110 (70.91%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 331
            DQES+ NVKQWL EIDRYAS+NVNKLLVGNK DLT  KVV   TAK FAD +GIPF+ETSAK++T VEQAFM MAA IK RM    +    R P ++I   PV    G C
Sbjct:   92 DQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKPAGGGC 200          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.169e-30
Identity = 68/110 (61.82%), Postives = 78/110 (70.91%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 331
            D+ES+ NVKQWL EIDRYAS+NVNKLLVGNK DLT  KVV   TAK FAD +GIPF+ETSAK++T VEQAFM MAA IK RM    +    R P ++I   PV    G C
Sbjct:   92 DRESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKPAGGGC 200          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.057e-30
Identity = 65/112 (58.04%), Postives = 79/112 (70.54%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKS--GCC 331
            D +SFNNVKQWL EIDRYA++ VNKLLVGNK D+T  KVV Y  AK FAD +GIPF+ETSAK+++ VEQAF+ MA  IK+RM S  + NN +       G  V+  S  GCC
Sbjct:   92 DMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDMTDKKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQIKERMGSSIATNNTKASVNVSPGHGVSNNSSGGCC 203          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.344e-29
Identity = 67/110 (60.91%), Postives = 78/110 (70.91%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 331
            DQES+ NVKQWL EIDR+AS+NVNKLLVGNK DLT  KVV   TAK FAD +GIPF+ETSAK++T VEQAFM MAA IK +M    +    R P ++I   PV    G C
Sbjct:   92 DQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGAASGGER-PNLKIDSTPVKPAGGGC 200          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.519e-28
Identity = 66/110 (60.00%), Postives = 78/110 (70.91%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 331
            DQESFNNVKQWL+EIDRYA +NVNKLLVGNK DLTA +VVS + AK FA+ +GI F+ETSAK++  VE+AFM MAA IK RMA+ P    A       +  P    S CC
Sbjct:   92 DQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPVAPKAGVKLTPGQQVPSNGGSKCC 201          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.774e-28
Identity = 63/111 (56.76%), Postives = 78/111 (70.27%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQP-SMNNARPPTVQIKGQPVAQKSGCC 331
            DQ+SFNNVKQWL EIDRYA + VN+LLVGNK D+   KVV Y  AK FAD + IPF+ETSAKDST VEQAF+ M+  IK+RM +   + +NA+      +G  V+Q S  C
Sbjct:   92 DQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAKSSVKVGQGTNVSQSSSNC 202          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.575e-25
Identity = 62/115 (53.91%), Postives = 73/115 (63.48%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPP-----TVQIKGQPVAQKSGCC 331
            DQESFN VK WL EIDRYA+  V KLLVGNKCDL   +VV Y+ AK FAD   +PF+ETSA DST VE AF+ MA  IK+ M SQ ++N           V +KGQ +    G C
Sbjct:   92 DQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESM-SQQNLNETTQKKEDKGNVNLKGQSLTNTGGGC 205          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.575e-25
Identity = 58/108 (53.70%), Postives = 74/108 (68.52%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSG 325
            DQ+SF NVKQW+ EIDRYA +NVNKLLVGNK DL   KVV    AK+FA+  GIPF+ETSAK++T VE+ F++MA  IK+R+A        +P  V IK +   +  G
Sbjct:   94 DQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKNRLAD--IQETPKPDEVDIKSKNKTKSGG 199          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.058e-24
Identity = 57/112 (50.89%), Postives = 70/112 (62.50%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKG---QPVAQKSGC 328
            D  SFNNVKQW+ EI RYA D+V +LLVGNKCDL   K+V   TA+ +AD +GIPF+ETSAK S  VEQAFM MA+ IK         NN+      +K     P+ +K  C
Sbjct:   92 DHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIKKLQGGIQPNNNSTYNAHVVKPTGFTPIGKKKKC 203          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.377e-21
Identity = 50/110 (45.45%), Postives = 72/110 (65.45%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 331
            D++SF +++ W+  I+++ASD+VNK+L+GNKCD+T  KVV     K+ ADE GI F+ETSAK+S  VE+AF+ +A  IK RM   P+      P   I   P  +K+ CC
Sbjct:   99 DEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTEKKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKRMIDTPN-----DPDHTICITPNNKKNTCC 203          
The following BLAST results are available for this feature:
BLAST of FC931414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
RAB1B_HUMAN2.120e-3062.73Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
RAB1B_MACFA6.169e-3061.82Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
YPT1_NEUCR8.057e-3058.04GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]
RAB1C_HUMAN2.344e-2960.91Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
YPT1_PHYIN1.519e-2860.00Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
YPT1_SCHPO5.774e-2856.76GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
YPT1_YEAST4.575e-2553.91GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB1D_DICDI4.575e-2553.70Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAB1B_DICDI5.058e-2450.89Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RAB8B_DICDI1.377e-2145.45Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionC34104H03EF PostHarvP1 Citrus clementina cDNA clone C34104H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931414 ID=FC931414; Name=FC931414; organism=Citrus clementina; type=EST; length=699bp
AGACCAAGAGAGCTTCAATAATGTCAAGCAGTGGTTGAATGAAATTGACC
GTTATGCTAGTGATAATGTCAACAAACTTCTGGTTGGAAACAAGTGTGAT
CTCACTGCAAATAAGGTTGTCTCGTACGAAACAGCCAAGGCATTTGCAGA
TGAAATTGGAATACCTTTCATGGAAACTAGTGCAAAAGATTCTACCACCG
TGGAACAGGCATTCATGGCCATGGCTGCTTCAATCAAGGATAGAATGGCA
AGTCAACCATCCATGAACAATGCAAGGCCTCCAACTGTACAGATCAAAGG
GCAGCCTGTTGCACAGAAGAGTGGCTGCTGCTCTACTTAAGTATCATTGT
AATATATCTGTCGTGGGTCTGCTGGACCTAATGGTGTGTAATGCTTTTCA
TCTTTTCAGTTGAAAGCTATGTCATCTGGACCAACCTCATCAAAAATTGT
TCTCCCTTTGTGGTTTACAGGACCAACACTCAGAAGATGATCCCCTTCCA
GTCCCTTTGTGGTTTATGAAAAGGCCTGTACAAAGTAGAAATGCTAATTT
GATGTTAGTATTCTTCTTTCTGTCCTATTCTTTATTGTGAATTGGCCTTA
ATAGCATGTTTGAATACTGTCAATAGCACTACCTTTTGTCCGTTTTGACA
GCGGTTATTGAAGACTTGAACCCATATTTGTTTAATTGTATGCTACATT
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