FC931414

Overview
NameFC931414
Unique NameFC931414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RABG1_DICDI (Ras-related protein RabG1 OS=Dictyostelium discoideum GN=rabG1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQ-IKGQPVAQKSGCC 331
            DQ ++NNV  W+ EI RY    V+++LVGNKCDL   K+V+   A+ +AD +GIPF+ETSA     VE+AFMAMA  I      +  +  ++P  V+ + G P   K   C
Sbjct:   91 DQLTYNNVGLWMQEIQRYGVLGVSRVLVGNKCDLEDRKLVNASIAQEYADILGIPFIETSATTGVNVEEAFMAMADEI-----YRNHIGGSKPSVVKPVCGSPPRTKKNIC 196          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB37_HUMAN (Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 2.972e-16
Identity = 46/113 (40.71%), Postives = 68/113 (60.18%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQK--SGCCS 334
            ++ SF+N++ WL EI  YA  +V  +L+GNK D+++ +V+  E  +  A E G+PF+ETSAK    VE AF+A+A  +K R   Q     A  P+ QI+    +QK  S CCS
Sbjct:  114 NKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKELKYRAGHQ-----ADEPSFQIRDYVESQKKRSSCCS 221          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.129e-15
Identity = 41/99 (41.41%), Postives = 59/99 (59.60%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIK 298
            D++SF N++ W+  I   AS  V +LL+GNKCD+ A + V  E A   A E GI F ETSAK S  V++AF ++A  I  +   +   NN +PP+  +K
Sbjct:   92 DEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLKNNNKPPSTDLK 190          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 36/102 (35.29%), Postives = 65/102 (63.73%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQP 307
            +++SF+N+K W+  I+ +AS +V ++++GNKCD+   + VS E  +  A + GI F+ETSAK S  VE+AF+ +A  I  ++  + + N+ +    ++K  P
Sbjct:   92 NEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSSINVEEAFITLARDIMTKLNKKMNENSLQEAVDKLKSPP 193          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCS 334
            ++ESF   K W+ E+ R AS N+   L GNK DL   + V ++ A+++AD+  + FMETSAK S  V + FMA+A  +       P  N+AR   V +       +S CCS
Sbjct:  104 NEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSARGRGVDLTEPAQPARSQCCS 214          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCS 334
            ++ESF   K W+ E+ R AS N+   L GNK DL   + V ++ A+++AD+  + FMETSAK S  V + FMA+A  +       P  N+AR   V +       +S CCS
Sbjct:  104 NEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSARGRGVDLTEPTQPTRSQCCS 214          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCS 334
            ++ESF   K W+ E+ R AS N+   L GNK DL   + V ++ A+++AD+  + FMETSAK S  V + FMA+A  +       P  N+AR   V +       +S CCS
Sbjct:  104 NEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSARGRGVDLTEPTQPTRSQCCS 214          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 41/99 (41.41%), Postives = 59/99 (59.60%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIK 298
            D++SF N++ W+  I   AS  V +LL+GNKCD+ A + V  E A   A E GI F ETSAK S  V++AF ++A  I  +   + S N  +PP+  +K
Sbjct:   92 DEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGNGNKPPSTDLK 190          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.292e-15
Identity = 41/111 (36.94%), Postives = 61/111 (54.95%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCS 334
            ++ESF   K W+ E+ R AS N+   L GNK DL   + V ++ A+++AD+  + FMETSAK S  V + FMA+A  +       P  N+AR   V +       ++ CCS
Sbjct:  104 NEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSARGRGVDLTEPTQPTRNQCCS 214          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.292e-15
Identity = 39/87 (44.83%), Postives = 56/87 (64.37%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPS 262
            +++SF+N++ WL EI  YA  +V  +L+GNK D T ++VV  E  +  A E G+PFMETSA+    V+ AF A+A  +K R A  PS
Sbjct:  152 NKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQDRVVKREDGEKLAKEYGLPFMETSARTGLNVDLAFTAIAKELKQRSAKAPS 238          
The following BLAST results are available for this feature:
BLAST of FC931414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
RABG1_DICDI2.276e-1642.34Ras-related protein RabG1 OS=Dictyostelium discoid... [more]
RAB37_HUMAN2.972e-1640.71Ras-related protein Rab-37 OS=Homo sapiens GN=RAB3... [more]
RAB13_BOVIN1.129e-1541.41Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
RAB8_DISOM1.927e-1535.29Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RAB5A_MOUSE1.927e-1537.84Ras-related protein Rab-5A OS=Mus musculus GN=Rab5... [more]
RAB5A_MACFA1.927e-1537.84Ras-related protein Rab-5A OS=Macaca fascicularis ... [more]
RAB5A_CANFA1.927e-1537.84Ras-related protein Rab-5A OS=Canis familiaris GN=... [more]
RAB13_HUMAN1.927e-1541.41Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB5A_HUMAN4.292e-1536.94Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5... [more]
RAB26_MOUSE4.292e-1544.83Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]

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Properties
Property NameValue
Genbank descriptionC34104H03EF PostHarvP1 Citrus clementina cDNA clone C34104H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931414 ID=FC931414; Name=FC931414; organism=Citrus clementina; type=EST; length=699bp
AGACCAAGAGAGCTTCAATAATGTCAAGCAGTGGTTGAATGAAATTGACC
GTTATGCTAGTGATAATGTCAACAAACTTCTGGTTGGAAACAAGTGTGAT
CTCACTGCAAATAAGGTTGTCTCGTACGAAACAGCCAAGGCATTTGCAGA
TGAAATTGGAATACCTTTCATGGAAACTAGTGCAAAAGATTCTACCACCG
TGGAACAGGCATTCATGGCCATGGCTGCTTCAATCAAGGATAGAATGGCA
AGTCAACCATCCATGAACAATGCAAGGCCTCCAACTGTACAGATCAAAGG
GCAGCCTGTTGCACAGAAGAGTGGCTGCTGCTCTACTTAAGTATCATTGT
AATATATCTGTCGTGGGTCTGCTGGACCTAATGGTGTGTAATGCTTTTCA
TCTTTTCAGTTGAAAGCTATGTCATCTGGACCAACCTCATCAAAAATTGT
TCTCCCTTTGTGGTTTACAGGACCAACACTCAGAAGATGATCCCCTTCCA
GTCCCTTTGTGGTTTATGAAAAGGCCTGTACAAAGTAGAAATGCTAATTT
GATGTTAGTATTCTTCTTTCTGTCCTATTCTTTATTGTGAATTGGCCTTA
ATAGCATGTTTGAATACTGTCAATAGCACTACCTTTTGTCCGTTTTGACA
GCGGTTATTGAAGACTTGAACCCATATTTGTTTAATTGTATGCTACATT
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