FC931414

Overview
NameFC931414
Unique NameFC931414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQK 319
            +++SF+N++ W+  I+ +AS +V K+++GNKCD+   + VS E  +  A + GI FMETSAK +  VE AF  +A  IK +M  +   N+ +     +K  P  QK
Sbjct:   92 NEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFYTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQK 197          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 41/111 (36.94%), Postives = 60/111 (54.05%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCS 334
            ++ESF   K W+ E+ R AS N+   L GNK DL   + V ++ A+++AD+  + FMETSAK S  V + FMA+A  +       P +N  R   V +       +S CCS
Sbjct:  104 NEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGINCTRGRGVDLTEPTQPTRSQCCS 214          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 41/109 (37.61%), Postives = 62/109 (56.88%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGC 328
            D++SF N++ W+  I   AS  V +LL+GNKCD+ A + V  E A   A E GI F ETSAK S  V++AF ++A  I  +   + S N+++P +  +K       + C
Sbjct:   92 DEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVLKEQADKLAREHGIRFFETSAKSSMNVDEAFNSLARDILLKSGGRRSGNHSKPSSTDLKPSDKKNTNKC 200          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB3_DROME (Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.249e-14
Identity = 37/115 (32.17%), Postives = 67/115 (58.26%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMA----SQPSMNNARPPTVQIKGQPVAQKSGCCS 334
            +++SFN+V+ W+ +I  Y+ DN   +LVGNKCD+   +V+S+E  +  AD++G+ F ETSAK++  V+  F  +   I D+M+    + P++        ++  QP    +  C+
Sbjct:  105 NEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVISFERGRQLADQLGVEFFETSAKENVNVKAVFERLVDIICDKMSESLDADPTLVGGGQKGQRLTDQPQGTPNANCN 219          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.631e-14
Identity = 39/106 (36.79%), Postives = 61/106 (57.55%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQK 319
            +++SF N++ W+  I+ +AS +V K+++GNKCD    + VS E  +  A   GI FMETSAK +  +E AF  +A  IK +M  +   N+ +     +K  P  QK
Sbjct:   92 NEKSFENIRNWVRNIEEHASPDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSAKANINIENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQK 197          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.631e-14
Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGC 328
            D++SF N++ W+  I   AS  V +LL+GNKCD+ A + V  E A+  A E  I F ETSAK S  V++AF ++A  I  +   + S N+++P +  +K       + C
Sbjct:   92 DEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQREQAERLAREHRIRFFETSAKSSVNVDEAFSSLARDILLKTGGRRSGNSSKPSSTDLKVSDKKNSNKC 200          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB5B_CHICK (Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 42/111 (37.84%), Postives = 60/111 (54.05%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCS 334
            +QE+F   K W+ E+ R AS ++   L GNK DL + ++V YE A+A+AD+  + FMETSAK +  V   F+A+A  +        S    R   V +  Q    KS CCS
Sbjct:  104 NQETFARAKTWVKELQRQASPSIVIALAGNKADLASKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQSTSGAAGRSRGVDLHEQTQQNKSQCCS 214          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 39/101 (38.61%), Postives = 61/101 (60.40%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQ 304
            ++ESFN+V+ W  +I  Y+ +N   +LVGNKCD+ + +VVS +  +  AD++G+ F ETSAK++  V+  F  +   I D+MA        + P  Q KGQ
Sbjct:  106 NEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMDSERVVSMDRGRQLADQLGLEFFETSAKENINVKAVFEKLVEIICDKMAESLD----KDPQQQPKGQ 202          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: SEC4_CANGA (Ras-related protein SEC4 OS=Candida glabrata GN=SEC4 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.782e-14
Identity = 40/113 (35.40%), Postives = 67/113 (59.29%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQ--PSMNNARPPTVQIK-GQPVAQKSGCC 331
            D+ +F N+KQW   ++ +A+D    LLVGNK D+   +VV+YE  +A A E+G+PF+E+SAK+   V + F  +A  I++++ S      N+ +   + I   +  + KS CC
Sbjct:  104 DERTFANIKQWFKTVNEHANDEAQLLLVGNKSDMDT-RVVTYEQGEALAKELGLPFIESSAKNDDNVNEIFFTLARLIQEKIDSNKLSGPNSGKDGNISINANKGDSSKSNCC 215          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB3B_MOUSE (Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.782e-14
Identity = 41/114 (35.96%), Postives = 65/114 (57.02%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMA----SQPSMNNARPPTVQIKGQPVAQKSGCC 331
            ++ESFN V+ W  +I  Y+ DN   +LVGNKCD+   +VV  E  +  A+++G  F E SAK++ +V QAF  +  +I D+M+    + PS+  A   T      P+ Q++  C
Sbjct:  106 NEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSMDTDPSVLGASKTTRLSDTPPLLQQNCSC 219          
The following BLAST results are available for this feature:
BLAST of FC931414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
RAB8A_BOVIN9.561e-1537.74Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
RAB5A_PIG9.561e-1536.94Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A ... [more]
RAB13_MESAU9.561e-1537.61Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
RAB3_DROME1.249e-1432.17Ras-related protein Rab-3 OS=Drosophila melanogast... [more]
RAB8A_CHICK1.631e-1436.79Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RAB13_RAT1.631e-1436.70Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
RAB5B_CHICK2.130e-1437.84Ras-related protein Rab-5B OS=Gallus gallus GN=RAB... [more]
RAB3_CAEEL2.130e-1438.61Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]
SEC4_CANGA2.782e-1435.40Ras-related protein SEC4 OS=Candida glabrata GN=SE... [more]
RAB3B_MOUSE2.782e-1435.96Ras-related protein Rab-3B OS=Mus musculus GN=Rab3... [more]

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Properties
Property NameValue
Genbank descriptionC34104H03EF PostHarvP1 Citrus clementina cDNA clone C34104H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931414 ID=FC931414; Name=FC931414; organism=Citrus clementina; type=EST; length=699bp
AGACCAAGAGAGCTTCAATAATGTCAAGCAGTGGTTGAATGAAATTGACC
GTTATGCTAGTGATAATGTCAACAAACTTCTGGTTGGAAACAAGTGTGAT
CTCACTGCAAATAAGGTTGTCTCGTACGAAACAGCCAAGGCATTTGCAGA
TGAAATTGGAATACCTTTCATGGAAACTAGTGCAAAAGATTCTACCACCG
TGGAACAGGCATTCATGGCCATGGCTGCTTCAATCAAGGATAGAATGGCA
AGTCAACCATCCATGAACAATGCAAGGCCTCCAACTGTACAGATCAAAGG
GCAGCCTGTTGCACAGAAGAGTGGCTGCTGCTCTACTTAAGTATCATTGT
AATATATCTGTCGTGGGTCTGCTGGACCTAATGGTGTGTAATGCTTTTCA
TCTTTTCAGTTGAAAGCTATGTCATCTGGACCAACCTCATCAAAAATTGT
TCTCCCTTTGTGGTTTACAGGACCAACACTCAGAAGATGATCCCCTTCCA
GTCCCTTTGTGGTTTATGAAAAGGCCTGTACAAAGTAGAAATGCTAATTT
GATGTTAGTATTCTTCTTTCTGTCCTATTCTTTATTGTGAATTGGCCTTA
ATAGCATGTTTGAATACTGTCAATAGCACTACCTTTTGTCCGTTTTGACA
GCGGTTATTGAAGACTTGAACCCATATTTGTTTAATTGTATGCTACATT
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