FC931414

Overview
NameFC931414
Unique NameFC931414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB3B_MESAU (Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.782e-14
Identity = 41/114 (35.96%), Postives = 65/114 (57.02%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMA----SQPSMNNARPPTVQIKGQPVAQKSGCC 331
            ++ESFN V+ W  +I  Y+ DN   +LVGNKCD+   +VV  E  +  A+++G  F E SAK++ +V QAF  +  +I D+M+    + PS+  A   T      P+ Q++  C
Sbjct:  106 NEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSLDTDPSVLGASKTTRLSDTPPLLQQNCSC 219          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.782e-14
Identity = 41/96 (42.71%), Postives = 65/96 (67.71%), Query Frame = 2
Query:   11 SFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQI 295
            SF+++ + WL +ID+YA+ NV KLL+GNK DL  ++VVS + AK  A++  + ++E SAK  + VE+AF  +A ++KD++   PS  NA   TV +
Sbjct:   94 SFDHITETWLQDIDKYATSNVCKLLIGNKIDLAESRVVSADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQYPS--NAPASTVSL 187          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 40/113 (35.40%), Postives = 66/113 (58.41%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQP--SMNNARPPTVQI-KGQPVAQKSGCC 331
            D+ +F N+KQW   ++ +A+D    LLVGNK D+   +VV+ +  +A A E+GIPF+E+SAK+   V + F  +A  I++++ S     + N +   + I  G   + KS CC
Sbjct:  104 DERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGNGKEGNISINSGSGNSSKSNCC 215          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 34/91 (37.36%), Postives = 60/91 (65.93%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNA 274
            +++SF+N+K W+  I+ +AS +V ++++GNKCD+   + VS E  +  A + GI F+ETSAK S  VE+AF  +A  I  ++  + + +N+
Sbjct:   92 NEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNS 182          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB3B_RAT (Ras-related protein Rab-3B OS=Rattus norvegicus GN=Rab3b PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 40/114 (35.09%), Postives = 65/114 (57.02%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMA----SQPSMNNARPPTVQIKGQPVAQKSGCC 331
            ++ESFN V+ W  +I  Y+ DN   +LVGNKCD+   +V+  E  +  A+++G  F E SAK++ +V QAF  +  +I D+M+    + PS+  A   T      P+ Q++  C
Sbjct:  106 NEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVIPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSMDTDPSVLGASKTTRLSDTPPLLQQNCSC 219          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB3B_HUMAN (Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 41/114 (35.96%), Postives = 65/114 (57.02%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMA----SQPSMNNARPPTVQIKGQPVAQKSGCC 331
            ++ESFN V+ W  +I  Y+ DN   +LVGNKCD+   +VV  E  +  A+++G  F E SAK++ +V QAF  +  +I D+M+    + PSM  +   T      P+ Q++  C
Sbjct:  106 NEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSLDTDPSMLGSSKNTRLSDTPPLLQQNCSC 219          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB3A_RAT (Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQP 307
            ++ESFN V+ W  +I  Y+ DN   LLVGNKCD+   +VVS E  +  AD +G  F E SAKD+  V+Q F  +   I ++M+   S++ A P     K  P
Sbjct:  106 NEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSE--SLDTADPAVTGAKQGP 205          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB3A_PIG (Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQP 307
            ++ESFN V+ W  +I  Y+ DN   LLVGNKCD+   +VVS E  +  AD +G  F E SAKD+  V+Q F  +   I ++M+   S++ A P     K  P
Sbjct:  106 NEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSE--SLDTADPAVTGAKQGP 205          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB3A_MOUSE (Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQP 307
            ++ESFN V+ W  +I  Y+ DN   LLVGNKCD+   +VVS E  +  AD +G  F E SAKD+  V+Q F  +   I ++M+   S++ A P     K  P
Sbjct:  106 NEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSE--SLDTADPAVTGAKQGP 205          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB3A_MACFA (Ras-related protein Rab-3A OS=Macaca fascicularis GN=RAB3A PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQP 307
            ++ESFN V+ W  +I  Y+ DN   LLVGNKCD+   +VVS E  +  AD +G  F E SAKD+  V+Q F  +   I ++M+   S++ A P     K  P
Sbjct:  106 NEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSE--SLDTADPAVTGAKQGP 205          
The following BLAST results are available for this feature:
BLAST of FC931414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
RAB3B_MESAU2.782e-1435.96Ras-related protein Rab-3B OS=Mesocricetus auratus... [more]
RAB1_THEPA2.782e-1442.71Ras-related protein Rab-1 OS=Theileria parva GN=ra... [more]
SEC4_YEAST3.633e-1435.40Ras-related protein SEC4 OS=Saccharomyces cerevisi... [more]
RAB8B_HUMAN3.633e-1437.36Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB3B_RAT3.633e-1435.09Ras-related protein Rab-3B OS=Rattus norvegicus GN... [more]
RAB3B_HUMAN3.633e-1435.96Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3... [more]
RAB3A_RAT4.745e-1440.20Ras-related protein Rab-3A OS=Rattus norvegicus GN... [more]
RAB3A_PIG4.745e-1440.20Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A ... [more]
RAB3A_MOUSE4.745e-1440.20Ras-related protein Rab-3A OS=Mus musculus GN=Rab3... [more]
RAB3A_MACFA4.745e-1440.20Ras-related protein Rab-3A OS=Macaca fascicularis ... [more]

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Properties
Property NameValue
Genbank descriptionC34104H03EF PostHarvP1 Citrus clementina cDNA clone C34104H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931414 ID=FC931414; Name=FC931414; organism=Citrus clementina; type=EST; length=699bp
AGACCAAGAGAGCTTCAATAATGTCAAGCAGTGGTTGAATGAAATTGACC
GTTATGCTAGTGATAATGTCAACAAACTTCTGGTTGGAAACAAGTGTGAT
CTCACTGCAAATAAGGTTGTCTCGTACGAAACAGCCAAGGCATTTGCAGA
TGAAATTGGAATACCTTTCATGGAAACTAGTGCAAAAGATTCTACCACCG
TGGAACAGGCATTCATGGCCATGGCTGCTTCAATCAAGGATAGAATGGCA
AGTCAACCATCCATGAACAATGCAAGGCCTCCAACTGTACAGATCAAAGG
GCAGCCTGTTGCACAGAAGAGTGGCTGCTGCTCTACTTAAGTATCATTGT
AATATATCTGTCGTGGGTCTGCTGGACCTAATGGTGTGTAATGCTTTTCA
TCTTTTCAGTTGAAAGCTATGTCATCTGGACCAACCTCATCAAAAATTGT
TCTCCCTTTGTGGTTTACAGGACCAACACTCAGAAGATGATCCCCTTCCA
GTCCCTTTGTGGTTTATGAAAAGGCCTGTACAAAGTAGAAATGCTAATTT
GATGTTAGTATTCTTCTTTCTGTCCTATTCTTTATTGTGAATTGGCCTTA
ATAGCATGTTTGAATACTGTCAATAGCACTACCTTTTGTCCGTTTTGACA
GCGGTTATTGAAGACTTGAACCCATATTTGTTTAATTGTATGCTACATT
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