FC931414

Overview
NameFC931414
Unique NameFC931414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB3A_HUMAN (Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQP 307
            ++ESFN V+ W  +I  Y+ DN   LLVGNKCD+   +VVS E  +  AD +G  F E SAKD+  V+Q F  +   I ++M+   S++ A P     K  P
Sbjct:  106 NEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSE--SLDTADPAVTGAKQGP 205          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB3A_BOVIN (Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQP 307
            ++ESFN V+ W  +I  Y+ DN   LLVGNKCD+   +VVS E  +  AD +G  F E SAKD+  V+Q F  +   I ++M+   S++ A P     K  P
Sbjct:  106 NEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSE--SLDTADPAVTGAKQGP 205          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 39/99 (39.39%), Postives = 59/99 (59.60%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIK 298
            D++SF N++ W+  I   AS  V +LL+GNKCD+ A + V  E A+  A E  I F ETSAK S  V++AF ++A  I  +   + S  N++P +  +K
Sbjct:   92 DEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLARDILLKTGGRRSGTNSKPSSTGLK 190          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 37/99 (37.37%), Postives = 62/99 (62.63%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIK 298
            +++SF+N++ W+  I+ +AS +V K+++GNKCD+   + VS E  +  A + GI FMETSAK +  VE AF  +A  IK +M  +   N+ +  +  +K
Sbjct:   92 NEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSSHGVK 190          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 37/99 (37.37%), Postives = 62/99 (62.63%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIK 298
            +++SF+N++ W+  I+ +AS +V K+++GNKCD+   + VS E  +  A + GI FMETSAK +  VE AF  +A  IK +M  +   N+ +  +  +K
Sbjct:   92 NEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSSHGVK 190          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB3B_BOVIN (Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.094e-14
Identity = 40/114 (35.09%), Postives = 64/114 (56.14%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMA----SQPSMNNARPPTVQIKGQPVAQKSGCC 331
            ++ESFN V+ W  +I  Y+ DN   +LVGNKCD+   +VV  E  +  A+++G  F E SAK++ +V QAF  +  +I D+M+    + PS+      T      P+ Q++  C
Sbjct:  106 NEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDTLDTDPSLLGTSKNTRLSDTPPLLQQNCSC 219          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 40/123 (32.52%), Postives = 70/123 (56.91%), Query Frame = 2
Query:    5 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASI-----KDRMASQPSMNNARPPTVQIK-------GQPVAQKSGCCST 337
            +++F+++ +WL E+  +A  N+  +L+GNK DL   + V  E AK FA + G+ F+ETSA ++T +E AF+ +   I     K  +A+  + +N  P ++  K       GQ + +K  CCS+
Sbjct:  100 RQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKKNLAADDNQSNGNPASLTGKKILVPGPGQVIPEKKACCSS 222          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB3C_HUMAN (Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 40/113 (35.40%), Postives = 65/113 (57.52%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMA----SQPSMNNARPPTVQIKGQPVAQKSGC 328
            ++ESFN V+ W  +I  Y+ DN   +LVGNKCD+   +V+S E  +   +++G  F ETSAKD+  V+Q F  +   I D+M+    + P++  A+  T ++K  P   +  C
Sbjct:  114 NEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQNT-RLKETPPPPQPNC 225          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB3C_BOVIN (Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 40/113 (35.40%), Postives = 65/113 (57.52%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMA----SQPSMNNARPPTVQIKGQPVAQKSGC 328
            ++ESFN V+ W  +I  Y+ DN   +LVGNKCD+   +V+S E  +   +++G  F ETSAKD+  V+Q F  +   I D+M+    + P++  A+  T ++K  P   +  C
Sbjct:  114 NEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQNT-RLKETPPPPQPNC 225          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 45/120 (37.50%), Postives = 67/120 (55.83%), Query Frame = 2
Query:    5 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRM------ASQPS----MNNARPPTVQIKGQPVAQKSGCCS 334
            +E+FN++  WL +  ++A+ N+  +LVGNKCDL+  + VSYE  + FA E G+ FME SAK +  VE+AF+  A +I  ++       S  S    +  A P      G   +Q  GCCS
Sbjct:   91 RETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNESYGIKVGYAIPGQSGGAGSSSSQGGGCCS 210          
The following BLAST results are available for this feature:
BLAST of FC931414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
RAB3A_HUMAN4.745e-1440.20Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3... [more]
RAB3A_BOVIN4.745e-1440.20Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A ... [more]
RAB13_MOUSE4.745e-1439.39Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
RAB8A_RAT6.197e-1437.37Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_MOUSE6.197e-1437.37Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RAB3B_BOVIN8.094e-1435.09Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B ... [more]
RB11D_TOBAC1.057e-1332.52Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RAB3C_HUMAN1.057e-1335.40Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3... [more]
RAB3C_BOVIN1.057e-1335.40Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C ... [more]
RAB2B_MAIZE1.057e-1337.50Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]

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Properties
Property NameValue
Genbank descriptionC34104H03EF PostHarvP1 Citrus clementina cDNA clone C34104H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931414 ID=FC931414; Name=FC931414; organism=Citrus clementina; type=EST; length=699bp
AGACCAAGAGAGCTTCAATAATGTCAAGCAGTGGTTGAATGAAATTGACC
GTTATGCTAGTGATAATGTCAACAAACTTCTGGTTGGAAACAAGTGTGAT
CTCACTGCAAATAAGGTTGTCTCGTACGAAACAGCCAAGGCATTTGCAGA
TGAAATTGGAATACCTTTCATGGAAACTAGTGCAAAAGATTCTACCACCG
TGGAACAGGCATTCATGGCCATGGCTGCTTCAATCAAGGATAGAATGGCA
AGTCAACCATCCATGAACAATGCAAGGCCTCCAACTGTACAGATCAAAGG
GCAGCCTGTTGCACAGAAGAGTGGCTGCTGCTCTACTTAAGTATCATTGT
AATATATCTGTCGTGGGTCTGCTGGACCTAATGGTGTGTAATGCTTTTCA
TCTTTTCAGTTGAAAGCTATGTCATCTGGACCAACCTCATCAAAAATTGT
TCTCCCTTTGTGGTTTACAGGACCAACACTCAGAAGATGATCCCCTTCCA
GTCCCTTTGTGGTTTATGAAAAGGCCTGTACAAAGTAGAAATGCTAATTT
GATGTTAGTATTCTTCTTTCTGTCCTATTCTTTATTGTGAATTGGCCTTA
ATAGCATGTTTGAATACTGTCAATAGCACTACCTTTTGTCCGTTTTGACA
GCGGTTATTGAAGACTTGAACCCATATTTGTTTAATTGTATGCTACATT
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