FC931414

Overview
NameFC931414
Unique NameFC931414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB3C_RAT (Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 40/113 (35.40%), Postives = 64/113 (56.64%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMA----SQPSMNNARPPTVQIKGQPVAQKSGC 328
            ++ESFN V+ W  +I  Y+ DN   +L GNKCD+   +VVS E  +   +++G  F ETSAKD+  V+Q F  +   I D+M+    + P++  A+  T ++K  P   +  C
Sbjct:  114 NEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQST-RLKETPPPPQPNC 225          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB3C_MOUSE (Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 40/113 (35.40%), Postives = 64/113 (56.64%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMA----SQPSMNNARPPTVQIKGQPVAQKSGC 328
            ++ESFN V+ W  +I  Y+ DN   +L GNKCD+   +VVS E  +   +++G  F ETSAKD+  V+Q F  +   I D+M+    + P++  A+  T ++K  P   +  C
Sbjct:  114 NEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQST-RLKETPPPPQPNC 225          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB26_HUMAN (Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPS 262
            ++ SF+N++ WL EI  YA  +V  +L+GNK D    +VV  E  +  A E G+PFMETSAK    V+ AF A+A  +K R    PS
Sbjct:  148 NKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKQRSMKAPS 234          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 33/91 (36.26%), Postives = 59/91 (64.84%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNA 274
            +++SF+N+K W+  I+ +AS +V ++++GNKCD+   + VS E  +  A + GI F+E SAK S  VE+AF  +A  I  ++  + + +N+
Sbjct:   92 NEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLEASAKSSMNVEEAFFTLARDIMTKLNRKMNDSNS 182          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 39/106 (36.79%), Postives = 63/106 (59.43%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQK 319
            +++SF+N++ W+  I+ +AS +V K+++GNK D+   + VS E  +  A + GI FMETSAK +  VE AF  +A  IK +M  +   N+ +     +K  P  QK
Sbjct:   92 NEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQK 197          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB3D_MOUSE (Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 43/115 (37.39%), Postives = 59/115 (51.30%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRM------ASQPSMNNARPPTVQIKGQPVAQKSGC 328
            +QESF  V+ W  +I  Y+ DN   +LVGNKCDL   +VV  E  +  AD++G  F E SAK++  V+Q F  +   I D+M      +S P  N   P    +   P  Q S C
Sbjct:  106 NQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDIICDKMNESLEPSSSPGSNGKGP---ALGDTPPPQPSSC 217          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB1_THEAN (Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 40/96 (41.67%), Postives = 64/96 (66.67%), Query Frame = 2
Query:   11 SFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQI 295
            SF+++ + WL +ID+YA+ NV KLL+GNK DL  ++VV  + AK  A++  + ++E SAK  + VE+AF  +A ++KD++   PS  NA   TV +
Sbjct:   94 SFDHITETWLQDIDKYATSNVCKLLIGNKIDLVDSRVVLADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQYPS--NAPTSTVNL 187          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB5C_CANFA (Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = 2
Query:    8 ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCS 334
            ++F   K W+ E+ R AS N+   L GNK DL + + V ++ A+A+AD+  + FMETSAK +  V + FMA+A  +        +   +R   V ++    A +S CCS
Sbjct:  107 DTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPSRNRGVDLQENSPASRSQCCS 215          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB5B_PONAB (Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCS 334
            +QE+F   K W+ E+ R AS ++   L GNK DL   ++V YE A+A+AD+  + FMETSAK +  V   F+A+A  +             R   V +  Q    KS CCS
Sbjct:  104 NQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQCCS 214          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB5B_MOUSE (Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCS 334
            +QE+F   K W+ E+ R AS ++   L GNK DL   ++V YE A+A+AD+  + FMETSAK +  V   F+A+A  +             R   V +  Q    KS CCS
Sbjct:  104 NQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQCCS 214          
The following BLAST results are available for this feature:
BLAST of FC931414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
RAB3C_RAT1.381e-1335.40Ras-related protein Rab-3C OS=Rattus norvegicus GN... [more]
RAB3C_MOUSE1.381e-1335.40Ras-related protein Rab-3C OS=Mus musculus GN=Rab3... [more]
RAB26_HUMAN1.381e-1343.68Ras-related protein Rab-26 OS=Homo sapiens GN=RAB2... [more]
RAB8B_BOVIN1.803e-1336.26Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]
RAB8A_PONAB1.803e-1336.79Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB3D_MOUSE1.803e-1337.39Ras-related protein Rab-3D OS=Mus musculus GN=Rab3... [more]
RAB1_THEAN1.803e-1341.67Ras-related protein Rab-1 OS=Theileria annulata GN... [more]
RAB5C_CANFA2.355e-1334.86Ras-related protein Rab-5C OS=Canis familiaris GN=... [more]
RAB5B_PONAB2.355e-1336.94Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5... [more]
RAB5B_MOUSE2.355e-1336.94Ras-related protein Rab-5B OS=Mus musculus GN=Rab5... [more]

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Properties
Property NameValue
Genbank descriptionC34104H03EF PostHarvP1 Citrus clementina cDNA clone C34104H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931414 ID=FC931414; Name=FC931414; organism=Citrus clementina; type=EST; length=699bp
AGACCAAGAGAGCTTCAATAATGTCAAGCAGTGGTTGAATGAAATTGACC
GTTATGCTAGTGATAATGTCAACAAACTTCTGGTTGGAAACAAGTGTGAT
CTCACTGCAAATAAGGTTGTCTCGTACGAAACAGCCAAGGCATTTGCAGA
TGAAATTGGAATACCTTTCATGGAAACTAGTGCAAAAGATTCTACCACCG
TGGAACAGGCATTCATGGCCATGGCTGCTTCAATCAAGGATAGAATGGCA
AGTCAACCATCCATGAACAATGCAAGGCCTCCAACTGTACAGATCAAAGG
GCAGCCTGTTGCACAGAAGAGTGGCTGCTGCTCTACTTAAGTATCATTGT
AATATATCTGTCGTGGGTCTGCTGGACCTAATGGTGTGTAATGCTTTTCA
TCTTTTCAGTTGAAAGCTATGTCATCTGGACCAACCTCATCAAAAATTGT
TCTCCCTTTGTGGTTTACAGGACCAACACTCAGAAGATGATCCCCTTCCA
GTCCCTTTGTGGTTTATGAAAAGGCCTGTACAAAGTAGAAATGCTAATTT
GATGTTAGTATTCTTCTTTCTGTCCTATTCTTTATTGTGAATTGGCCTTA
ATAGCATGTTTGAATACTGTCAATAGCACTACCTTTTGTCCGTTTTGACA
GCGGTTATTGAAGACTTGAACCCATATTTGTTTAATTGTATGCTACATT
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