FC931414
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB3C_RAT (Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13 Identity = 40/113 (35.40%), Postives = 64/113 (56.64%), Query Frame = 2 Query: 2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMA----SQPSMNNARPPTVQIKGQPVAQKSGC 328 ++ESFN V+ W +I Y+ DN +L GNKCD+ +VVS E + +++G F ETSAKD+ V+Q F + I D+M+ + P++ A+ T ++K P + C Sbjct: 114 NEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQST-RLKETPPPPQPNC 225
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB3C_MOUSE (Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13 Identity = 40/113 (35.40%), Postives = 64/113 (56.64%), Query Frame = 2 Query: 2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMA----SQPSMNNARPPTVQIKGQPVAQKSGC 328 ++ESFN V+ W +I Y+ DN +L GNKCD+ +VVS E + +++G F ETSAKD+ V+Q F + I D+M+ + P++ A+ T ++K P + C Sbjct: 114 NEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQST-RLKETPPPPQPNC 225
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB26_HUMAN (Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3) HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13 Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 2 Query: 2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPS 262 ++ SF+N++ WL EI YA +V +L+GNK D +VV E + A E G+PFMETSAK V+ AF A+A +K R PS Sbjct: 148 NKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKQRSMKAPS 234
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13 Identity = 33/91 (36.26%), Postives = 59/91 (64.84%), Query Frame = 2 Query: 2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNA 274 +++SF+N+K W+ I+ +AS +V ++++GNKCD+ + VS E + A + GI F+E SAK S VE+AF +A I ++ + + +N+ Sbjct: 92 NEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLEASAKSSMNVEEAFFTLARDIMTKLNRKMNDSNS 182
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13 Identity = 39/106 (36.79%), Postives = 63/106 (59.43%), Query Frame = 2 Query: 2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQK 319 +++SF+N++ W+ I+ +AS +V K+++GNK D+ + VS E + A + GI FMETSAK + VE AF +A IK +M + N+ + +K P QK Sbjct: 92 NEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQK 197
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB3D_MOUSE (Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13 Identity = 43/115 (37.39%), Postives = 59/115 (51.30%), Query Frame = 2 Query: 2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRM------ASQPSMNNARPPTVQIKGQPVAQKSGC 328 +QESF V+ W +I Y+ DN +LVGNKCDL +VV E + AD++G F E SAK++ V+Q F + I D+M +S P N P + P Q S C Sbjct: 106 NQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDIICDKMNESLEPSSSPGSNGKGP---ALGDTPPPQPSSC 217
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB1_THEAN (Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13 Identity = 40/96 (41.67%), Postives = 64/96 (66.67%), Query Frame = 2 Query: 11 SFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQI 295 SF+++ + WL +ID+YA+ NV KLL+GNK DL ++VV + AK A++ + ++E SAK + VE+AF +A ++KD++ PS NA TV + Sbjct: 94 SFDHITETWLQDIDKYATSNVCKLLIGNKIDLVDSRVVLADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQYPS--NAPTSTVNL 187
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB5C_CANFA (Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13 Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = 2 Query: 8 ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCS 334 ++F K W+ E+ R AS N+ L GNK DL + + V ++ A+A+AD+ + FMETSAK + V + FMA+A + + +R V ++ A +S CCS Sbjct: 107 DTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPSRNRGVDLQENSPASRSQCCS 215
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB5B_PONAB (Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13 Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = 2 Query: 2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCS 334 +QE+F K W+ E+ R AS ++ L GNK DL ++V YE A+A+AD+ + FMETSAK + V F+A+A + R V + Q KS CCS Sbjct: 104 NQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQCCS 214
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB5B_MOUSE (Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13 Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = 2 Query: 2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCS 334 +QE+F K W+ E+ R AS ++ L GNK DL ++V YE A+A+AD+ + FMETSAK + V F+A+A + R V + Q KS CCS Sbjct: 104 NQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQCCS 214 The following BLAST results are available for this feature:
BLAST of FC931414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 161
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931414 ID=FC931414; Name=FC931414; organism=Citrus clementina; type=EST; length=699bpback to top |