FC931428

Overview
NameFC931428
Unique NameFC931428
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10223 contig Ccv1_Contig10223:1..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931428 vs. ExPASy Swiss-Prot
Match: KATG_NOCFA (Catalase-peroxidase OS=Nocardia farcinica GN=katG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 61/182 (33.52%), Postives = 82/182 (45.05%), Query Frame = 3
Query:  165 NCAPLMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGLVGVEVTGGPDIPFHPGRDDKAEPPQE------------------------------GRL---PDAKQGND-------HLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH 581
            N  PLM+R+AWHSAGTY      GG   G  R A   +   N  LD A RLL P K+++   IS+ADL  LAG V +E  G     F  GR D  EP ++                              G +   P+   GN         ++  FG +MG++ ++ VAL +GGHT G+ H
Sbjct:   96 NYGPLMIRMAWHSAGTYRSSDGRGGANTGQQRFAPLNSWPDNGNLDKARRLLWPVKKKYGQNISWADLMILAGNVALETMGFKTFGFAGGRVDVWEPEEDVYWGPEAEWLGDKRYSGERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAAVDIKDTFG-RMGMTVEETVALIAGGHTFGKTH 276          
BLAST of FC931428 vs. ExPASy Swiss-Prot
Match: KATG_ACIBL (Catalase-peroxidase OS=Acidobacteria bacterium (strain Ellin345) GN=katG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 62/178 (34.83%), Postives = 81/178 (45.51%), Query Frame = 3
Query:  174 PLMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGLVGVEVTGGPDIPFHPGRDDKAEPPQ------EGRLPDAKQ--GNDHLRQVFGA-QMGL------------------------------SDKDIVAL-SGGHTLGRCH 581
            P  +R+AWHSAGTY +    GG   G  R A   +   N  LD A RLL P K+++   +S+ADL  LAG V +E  G     F  GR+D  EP +      EG+  D K+  G   L    GA QMGL                              +D++ VAL +GGHT G+ H
Sbjct:  104 PFFIRMAWHSAGTYRIGDGRGGAGSGEQRFAPLNSWPDNGNLDKARRLLWPIKQKYGRKLSWADLMVLAGNVALESMGFKTFGFAGGREDVWEPSEDIYWGPEGKWLDDKRYSGERDLENPLGAVQMGLIYVNPEGPNGKPDPAAAAVDIRETFARMAMNDEETVALIAGGHTFGKTH 281          
BLAST of FC931428 vs. ExPASy Swiss-Prot
Match: KATG_STRGG (Catalase-peroxidase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=katG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 62/181 (34.25%), Postives = 81/181 (44.75%), Query Frame = 3
Query:  165 NCAPLMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGLVGVEVTGGPDIPFHPGRDDKAEP-------PQEGRLPDAK-QGNDHLRQVFGA-QMGL------------------------------SDKDIVAL-SGGHTLGRCH 581
            N  PLM+R+AWHSAGTY +    GG   G  R A   +   N  LD A RLL P K+++   +S+ADL  L G V +E  G     F  GR+D  E        P+   L D +  G+  L    GA QMGL                              +D++ VAL +GGHT G+ H
Sbjct:  111 NYGPLMIRMAWHSAGTYRISDGRGGAGAGQQRFAPLNSWPDNGNLDKARRLLWPVKKKYGQALSWADLLILTGNVALETMGFKTFGFAGGREDVWESEEDVYWGPETTWLDDERYTGDRELENPLGAVQMGLIYVNPEGPNGNPDPVAAARDIRETFRRMAMNDEETVALIAGGHTFGKTH 291          
BLAST of FC931428 vs. ExPASy Swiss-Prot
Match: KATG_CAUCR (Catalase-peroxidase OS=Caulobacter crescentus GN=katG PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 58/177 (32.77%), Postives = 81/177 (45.76%), Query Frame = 3
Query:  177 LMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGLVGVEVTGGPDIPFHPGRDDKAEP------PQEGRL--------------------------PDAKQGND-------HLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH 581
            L +R+AWH+AGTY +    GG   G  R A   +   N  LD A RLL P K+++   +S+ADLY L G V +E  G     F  GR D+ EP      P+   L                          P+   GN         +R+ F A+M ++D++ VAL +GGHT G+ H
Sbjct:   89 LFIRLAWHAAGTYRITDGRGGAGGGQQRFAPLNSWPDNTNLDKARRLLWPIKQKYGAKLSWADLYVLVGNVALESMGFKTFGFAGGRADQWEPEELYWGPESTWLDDKRYSGERELDSPLGAVQMGLIYVNPEGPNGNPDPLASARDIRETF-ARMAMNDEETVALIAGGHTFGKAH 264          
BLAST of FC931428 vs. ExPASy Swiss-Prot
Match: KATG_NITWN (Catalase-peroxidase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=katG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.151e-12
Identity = 59/177 (33.33%), Postives = 80/177 (45.20%), Query Frame = 3
Query:  177 LMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGLVGVEVTGGPDIPFHPGRDDKAEPPQ-----EGR----------------------------------LPDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH 581
            LM+R+AWHSAGTY +    GG   G  R A   +   N  LD A RLL P K+++   IS+ADLY LAG   +E  G   + F  GR D+ EP +     EG                                    PD       +R+ F  +M ++D++ VAL +GGHT G+ H
Sbjct:   89 LMVRMAWHSAGTYRITDGRGGAGGGQQRFAPLNSWPDNVLLDRARRLLWPIKQKYGRKISWADLYVLAGNAALESMGFKPLGFAGGRVDEWEPQELFWGPEGAWLGDERYSGERELAEPLAAVQMGLIYVNPEGPNGQPDPLAAAKDIRETF-LRMAMNDEETVALIAGGHTFGKTH 264          

HSP 2 Score: 22.3274 bits (46), Expect = 8.151e-12
Identity = 8/20 (40.00%), Postives = 13/20 (65.00%), Query Frame = 2
Query:  596 IEGPWTRHPLIFDNSYFTEL 655
            +E  WT+ P  +DN++F  L
Sbjct:  305 LEVTWTQTPTKWDNNFFDTL 324          
BLAST of FC931428 vs. ExPASy Swiss-Prot
Match: KATG_SOLUE (Catalase-peroxidase OS=Solibacter usitatus (strain Ellin6076) GN=katG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 63/176 (35.80%), Postives = 80/176 (45.45%), Query Frame = 3
Query:  177 LMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGLVGVEVTGGPDIPFHPGRDDKAEP------PQEGRLPDAK-QGNDHLRQVFGA-QMGL------------------------------SDKDIVAL-SGGHTLGRCH 581
            LM+R+AWHSAGTY +    GG   G  R A   +   N  LD A RLL P K+++   IS+ADL  LAG V +E  G     F  GR D  EP      P+   L D +  G   L +  GA QMGL                              +D++ VAL +GGHT G+ H
Sbjct:   99 LMIRMAWHSAGTYRITDGRGGAGAGQQRFAPLNSWPDNANLDKARRLLWPVKQKYGDKISWADLMVLAGNVALESMGFKTFGFAGGRSDVWEPEELYWGPEGTWLGDERYSGERQLSEPLGAVQMGLIYVNPEGPNGNPDPVAAAKDIRETFFRMAMNDEETVALIAGGHTFGKTH 274          
BLAST of FC931428 vs. ExPASy Swiss-Prot
Match: KATG_CHRSD (Catalase-peroxidase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=katG PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.374e-11
Identity = 55/183 (30.05%), Postives = 84/183 (45.90%), Query Frame = 3
Query:  177 LMLRIAWHSAGTYDVKT-KTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPT-ISYADLYQLAGLVGVEVTG--------GPDIPFHPGRD-----------------------DKAEPP----QEGRL----------PDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH 581
            +  R+AWHSAG+Y +   + GG  G  R A   +   N   D   RLL P K+++   IS+ADL  L+G +  EV G        G +  +HP +D                       D  E P    Q G +          PD ++  + +R+ F A+M ++D++  AL +GGHT+G+CH
Sbjct:   85 MFARVAWHSAGSYRLADGRGGGGTGNQRFAPLNSWPDNVNTDKGRRLLWPIKKKYGNKISWADLMVLSGTIAYEVAGLKTYGFAFGREDIWHPEKDIYWGDEKEWLAPSDERYADVEKPDTMENPLAAVQMGLIYVNPEGVNGQPDPQKTAEQVRETF-ARMAMNDEETAALTAGGHTIGKCH 266          

HSP 2 Score: 25.0238 bits (53), Expect = 1.374e-11
Identity = 10/24 (41.67%), Postives = 14/24 (58.33%), Query Frame = 2
Query:  596 IEGPWTRHPLIFDNSYFTELLTGE 667
            IEG WT++P  +D  +F  L   E
Sbjct:  307 IEGAWTKNPTQWDMGWFDMLFNHE 330          
BLAST of FC931428 vs. ExPASy Swiss-Prot
Match: KATG_BORA1 (Catalase-peroxidase OS=Bordetella avium (strain 197N) GN=katG PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.751e-11
Identity = 56/148 (37.84%), Postives = 72/148 (48.65%), Query Frame = 3
Query:  174 PLMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPT-ISYADLYQLAGLVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQ--GNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGLRD 605
            PL +R+AWHSAGTY V    GG   G  R A   +   N  LD A RLL P K+++   IS+ADL+ L G V +E  G     F  GR+D  EP Q+    D K   G D        + G ++   VA   GH  G+ H    G R+
Sbjct:   84 PLFIRMAWHSAGTYRVGDGRGGAGRGQQRFAPLNSWPDNVSLDKARRLLWPIKKKYGNKISWADLFILTGNVALETMGFKTFGFGGGREDTWEPDQDVYWGDEKTWLGGD-------LRYGKNEAQPVADKAGH--GKEHGRTDGGRN 222          
BLAST of FC931428 vs. ExPASy Swiss-Prot
Match: KATG_RHOP5 (Catalase-peroxidase OS=Rhodopseudomonas palustris (strain BisA53) GN=katG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 61/176 (34.66%), Postives = 80/176 (45.45%), Query Frame = 3
Query:  177 LMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPT-ISYADLYQLAGLVGVEVTGGPDIPFHPGRDDKAEP------PQEGRLPDAK-QGNDHLRQVFGA-QMGL------------------------------SDKDIVAL-SGGHTLGRCH 581
            L +R+AWHSAGTY +    GG   G  R A   +   N  LD A RLL P K+++   IS+ADL+ L+G V +E  G     F  GR D  EP      P+   L D++  G   L    GA QMGL                              +D++ VAL +GGHT G+ H
Sbjct:   90 LFIRLAWHSAGTYRISDGRGGAGAGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGNKISWADLFVLSGNVALESMGFKTFGFAGGRADTWEPEELYWGPEGTWLGDSRYSGERELSDPLGAVQMGLIYVNPEGPNGNPDPVGSAKDIRETFYRMAMNDEETVALIAGGHTFGKTH 265          
BLAST of FC931428 vs. ExPASy Swiss-Prot
Match: KATG3_MYCS2 (Catalase-peroxidase 3 OS=Mycobacterium smegmatis GN=katG3 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 58/189 (30.69%), Postives = 80/189 (42.33%), Query Frame = 3
Query:  174 PLMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGLVGVEVTGGPDIPFHPGRDDK---------------------------------------AEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCHKERSGLRDHGP 614
            PL+LR+AWH AGTY +    GG   G +R A   +   N  LD A RLL P K+++   IS++DL   AG   +E  G     F  GR+D                                         +P     LPD       +R+ F  +MG++D++ VAL +GGHT G+ H      R  GP
Sbjct:   99 PLVLRMAWHFAGTYRIGDGRGGAGAGMLRFAPLNSFPDNRNLDKARRLLWPVKKKYGRKISWSDLMIFAGNRALESMGCRTFGFAGGREDAWEADETYWGPESTWLADERHSGVRDLDQPLAASEMGLIYVDPQGPATLPDPLASARDIRETF-RRMGMNDEETVALIAGGHTFGKSHGPTDPSRCLGP 286          
The following BLAST results are available for this feature:
BLAST of FC931428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
KATG_NOCFA4.609e-1233.52Catalase-peroxidase OS=Nocardia farcinica GN=katG ... [more]
KATG_ACIBL4.609e-1234.83Catalase-peroxidase OS=Acidobacteria bacterium (st... [more]
KATG_STRGG6.019e-1234.25Catalase-peroxidase OS=Streptomyces griseus subsp.... [more]
KATG_CAUCR7.861e-1232.77Catalase-peroxidase OS=Caulobacter crescentus GN=k... [more]
KATG_NITWN8.151e-1233.33Catalase-peroxidase OS=Nitrobacter winogradskyi (s... [more]
KATG_SOLUE1.341e-1135.80Catalase-peroxidase OS=Solibacter usitatus (strain... [more]
KATG_CHRSD1.374e-1130.05Catalase-peroxidase OS=Chromohalobacter salexigens... [more]
KATG_BORA11.751e-1137.84Catalase-peroxidase OS=Bordetella avium (strain 19... [more]
KATG_RHOP52.287e-1134.66Catalase-peroxidase OS=Rhodopseudomonas palustris ... [more]
KATG3_MYCS25.095e-1130.69Catalase-peroxidase 3 OS=Mycobacterium smegmatis G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34105A05EF PostHarvP1 Citrus clementina cDNA clone C34105A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931428 ID=FC931428; Name=FC931428; organism=Citrus clementina; type=EST; length=718bp
GGTGCTCTGCTCGTGCCACTCTCGTTTGTTAAGGATTTGCGTCTCTCTTT
CTCATTTCATTCAGCGTTGAAAAGATGACGAAGAATTACCCCACTGTTAG
CGAGGATTACAAGAAGGCCGTGGAGAAATGCAAGAGGAAGCTCAGAGGCT
TCATCGCTGAGAAGAACTGCGCTCCACTCATGCTCCGTATCGCGTGGCAC
TCAGCTGGTACATATGATGTGAAGACCAAGACCGGAGGTCCATTCGGAAC
CATGAGGCTCGCTGCTGAGCAGGCACACTCAGCCAACAACGGCCTCGATA
TTGCCGTTAGGCTTTTGGAGCCGTTCAAGGAGCAGTTCCCTACCATCTCC
TACGCTGACCTTTATCAGCTTGCTGGTCTTGTTGGCGTTGAGGTTACCGG
TGGGCCCGATATCCCCTTCCACCCTGGAAGAGATGACAAGGCTGAGCCAC
CTCAAGAAGGCCGGCTTCCTGATGCTAAACAGGGTAATGATCACTTGAGG
CAAGTCTTTGGTGCTCAGATGGGCCTCAGCGACAAGGATATTGTTGCTCT
CTCTGGTGGCCACACCCTGGGAAGGTGCCACAAGGAGAGGTCTGGATTGA
GGGACCATGGACCCGNCACCCTCTCATTTTTGACAATTCCTACTTCACGG
AGCTCTTGACTGGTGAGAAAGGATGGTCTTCTGCATTGCCATCCGACAAG
GCCCTTCTGGATGACCCT
back to top