FC931430

Overview
NameFC931430
Unique NameFC931430
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15324 contig Ccv1_Contig15324:1..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931430 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13
Identity = 55/189 (29.10%), Postives = 87/189 (46.03%), Query Frame = 3
Query:  129 KVEPSTIPERFVRDLTE-RPSSLATALSPPGGIPIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYPMLPGTVQGYGQAFVFSENQKLDWCNMFALGVEPHFIRNPKLWPAKPAEFSETL-----------ETYSRDVRKLCQCLLKYVAISLGLK 659
            ++EP  IPE FV    + RP+S A        +P++++  L  G+ +        +A AC   GFFQV +HG++  L       A DFF LPL EK++   +PGTV GY  A       KL W    + G       +    P     FS TL           + Y  ++++L   +++ + +SLG++
Sbjct:   37 RMEPK-IPEPFVWPNGDARPASAAEL-----DMPVVDVGVLRDGDAEGLRRAAAQVAAACATHGFFQVSEHGVDAALARAALDGASDFFRLPLAEKRRARRVPGTVSGYTSAHADRFASKLPWKETLSFG-----FHDRAAAPVVADYFSSTLGPDFAPMGRVYQKYCEEMKELSLTIMELLELSLGVE 214          
BLAST of FC931430 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13
Identity = 55/189 (29.10%), Postives = 87/189 (46.03%), Query Frame = 3
Query:  129 KVEPSTIPERFVRDLTE-RPSSLATALSPPGGIPIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYPMLPGTVQGYGQAFVFSENQKLDWCNMFALGVEPHFIRNPKLWPAKPAEFSETL-----------ETYSRDVRKLCQCLLKYVAISLGLK 659
            ++EP  IPE FV    + RP+S A        +P++++  L  G+ +        +A AC   GFFQV +HG++  L       A DFF LPL EK++   +PGTV GY  A       KL W    + G       +    P     FS TL           + Y  ++++L   +++ + +SLG++
Sbjct:   37 RMEPK-IPEPFVWPNGDARPASAAEL-----DMPVVDVGVLRDGDAEGLRRAAAQVAAACATHGFFQVSEHGVDAALARAALDGASDFFRLPLAEKRRARRVPGTVSGYTSAHADRFASKLPWKETLSFG-----FHDRAAAPVVADYFSSTLGPDFAPMGRVYQKYCEEMKELSLTIMELLELSLGVE 214          
BLAST of FC931430 vs. ExPASy Swiss-Prot
Match: ACCO1_ARATH (1-aminocyclopropane-1-carboxylate oxidase OS=Arabidopsis thaliana GN=ACO PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.085e-12
Identity = 48/153 (31.37%), Postives = 81/153 (52.94%), Query Frame = 3
Query:  225 PIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYPMLPGTVQGYGQAFVFSENQKLDWCNMFALGVEPHFIRNPKLWPAKPAEFSETLETYSRDVRKLCQCLLKYVAISLGLKEKLLKNVW 683
            PIINL KL   N +E    +  +  ACE WGFF+ ++HGI L LL+ +EK+ K+ +   +EE+ K      +++  G   + SE   +DW + F L   P  + N    P    ++   ++ ++  + KL + LL  +  +LGL++  LK V+
Sbjct:    5 PIINLEKL---NGEERAITMEKIKDACENWGFFECVNHGISLELLDKVEKMTKEHYKKCMEERFK-----ESIKNRGLDSLRSEVNDVDWESTFYLKHLP--VSNISDVPDLDDDYRTLMKDFAGKIEKLSEELLDLLCENLGLEKGYLKKVF 147          
BLAST of FC931430 vs. ExPASy Swiss-Prot
Match: G3OX3_ARATH (Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 49/147 (33.33%), Postives = 66/147 (44.90%), Query Frame = 3
Query:  216 GGIPIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYPMLPGTVQGYGQAFVFSENQKLDWCNMFALGVEPHFIRNPKLWPAKPAEFSETLETYSRDVRKLCQCLLKYVAISLGL 656
            G IP+I+LS      + E H     L  ACEEWG F + DHG+  +LL N++   K  F LP+  K      P    GYG   +     KL W   F++           LWP   AEF   +E Y + +  L   L+  +  SLGL
Sbjct:   45 GPIPVISLS------NPEEHGL---LRQACEEWGVFHITDHGVSHSLLHNVDCQMKRLFSLPMHRKILAVRSPDESTGYGVVRISMFYDKLMWSEGFSVMGSSLRRHATLLWPDDHAEFCNVMEEYQKAMDDLSHRLISMLMGSLGL 182          
BLAST of FC931430 vs. ExPASy Swiss-Prot
Match: ACCO1_MALDO (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12
Identity = 47/153 (30.72%), Postives = 81/153 (52.94%), Query Frame = 3
Query:  225 PIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYPMLPGTVQGYGQAFVFSENQKLDWCNMFALGVEPHFIRNPKLWPAKPAEFSETLETYSRDVRKLCQCLLKYVAISLGLKEKLLKNVW 683
            P+++LS +   N +E    +  +  ACE WGFF++++HG+   LL+ +EK+ KD +   +E++ K       V   G   V SE   LDW + F L   P    N    P    E+ +T++ ++ ++ KL + LL  +  +LGL++  LK V+
Sbjct:    5 PVVDLSLV---NGEERAATLEKINDACENWGFFELVNHGMSTELLDTVEKMTKDHYKKTMEQRFK-----EMVAAKGLDDVQSEIHDLDWESTFFLRHLPS--SNISEIPDLEEEYRKTMKEFAVELEKLAEKLLDLLCENLGLEKGYLKKVF 147          
BLAST of FC931430 vs. ExPASy Swiss-Prot
Match: G3OX4_ARATH (Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12
Identity = 50/176 (28.41%), Postives = 80/176 (45.45%), Query Frame = 3
Query:  144 TIPERFVRDLTE-----RPSSLATALSPPGGIPIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYPMLPGTVQGYGQAFVFSENQKLDWCNMFALGVEPHFIRNPKLWPAKPAEFSETLETYSRDVRKLCQCLLKYVAISLGL 656
            T+PE F   LT      RPSS  +  +    IP+I+LS           +    +  A + WG FQ+ +HGI   LL++IE ++K  F +P E K +       V GYG+  +    +K  W   F +  + +      LWP    ++   ++ Y  ++ KL   LL  +  SLG+
Sbjct:   18 TLPESFTWKLTAADSLLRPSSAVSFDAVEESIPVIDLSN---------PDVTTLIGDASKTWGAFQIANHGISQKLLDDIESLSKTLFDMPSERKLEAASSDKGVSGYGEPRISPFFEKKMWSEGFTIADDSYRNHFNTLWPHDHTKYCGIIQEYVDEMEKLASRLLYCILGSLGV 184          
BLAST of FC931430 vs. ExPASy Swiss-Prot
Match: ACCO4_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Solanum lycopersicum GN=ACO4 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.924e-12
Identity = 48/153 (31.37%), Postives = 77/153 (50.33%), Query Frame = 3
Query:  225 PIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYPMLPGTVQGYGQAFVFSENQKLDWCNMFALGVEPHFIRNPKLWPAKPAEFSETLETYSRDVRKLCQCLLKYVAISLGLKEKLLKNVW 683
            PIINL  L   N DE    +  +  ACE WGFF++++HGI   +++ +EK+ K  +   +E++ K       V   G   V +E   LDW + F L   P    N    P    E+ E +  +++ + KL + LL  +  +LGL++  LKN +
Sbjct:    5 PIINLENL---NGDERAKTMEMIKDACENWGFFELVNHGIPHEVMDTVEKLTKGHYKKCMEQRFK-----ELVASKGLEAVQAEVTDLDWESTFFLRHLP--TSNISQVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAF 147          
BLAST of FC931430 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 45/152 (29.61%), Postives = 76/152 (50.00%), Query Frame = 3
Query:  219 GIPIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYPMLPGTVQGYGQAFVFSENQKLDWCNMFALGVEPHFIRNPK---LWPAKPAEFSETLETYSRDVRKLCQCLLKYVAISLGLKEK 665
            GIP+++L+      H +  N I+N   AC ++GFF++++HG+ L L+ N+E  A  FF     EK +    P    GYG   +   N  + W     L   P  I +PK   ++   P  F   +E Y   V+ +C  +L+ +A  LG++++
Sbjct:   26 GIPVVDLT------HPDAKNLIVN---ACRDFGFFKLVNHGVPLELMANLENEALRFFKKSQSEKDRAG--PPDPFGYGSKRI-GPNGDVGWVEYLLLNTNPDVI-SPKSLCIFRENPHHFRAVVENYITAVKNMCYAVLELMAEGLGIRQR 164          
BLAST of FC931430 vs. ExPASy Swiss-Prot
Match: LDOX_MAIZE (Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 45/183 (24.59%), Postives = 79/183 (43.17%), Query Frame = 3
Query:  141 STIPERFVRDLTERPSSLATALS---------PPGGIPIINLSKLMKGNHDEFHNE--ILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYPMLP--GTVQGYGQAFVFSENQKLDWCNMFALGVEPHFIRNPKLWPAKPAEFSETLETYSRDVRKLCQCLLKYVAISL 650
            S IP  +VR   ER + L  A               IP++++S  +  +  +   +  +  +  A  +WG   +  HGI   L++ +      FF LP+++K+ Y   P  G +QGYG     +   + +W +     V P  + +  LWPA P ++      + R  R L   LL  +++ L
Sbjct:   23 SAIPPEYVRPADER-AGLGDAFDLARTHANDHTAPRIPVVDISPFLDSSSQQQQRDECVEAVRAAAADWGVMHIAGHGIPAELMDRLRAAGTAFFALPVQDKEAYANDPAAGRLQGYGSRLATNTCGQREWEDYLFHLVHPDGLADHALWPAYPPDYIAATRDFGRRTRDLASTLLAILSMGL 204          
BLAST of FC931430 vs. ExPASy Swiss-Prot
Match: ACCO3_PETHY (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Petunia hybrida GN=ACO3 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 47/153 (30.72%), Postives = 76/153 (49.67%), Query Frame = 3
Query:  225 PIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYPMLPGTVQGYGQAFVFSENQKLDWCNMFALGVEPHFIRNPKLWPAKPAEFSETLETYSRDVRKLCQCLLKYVAISLGLKEKLLKNVW 683
            PIINL KL     D     I +   ACE WGFF++++HGI   +++ +EK+ K  +   +E++ K       V   G   V +E   LDW + F L   P  + N    P    E+ E +  +++ + KL + LL  +  +LGL++  LK  +
Sbjct:    5 PIINLEKLNGSERDATMEMIKD---ACENWGFFELVNHGIPHEVMDTVEKLTKGHYKKCMEQRFK-----ELVASKGLEAVQAEVTDLDWESTFFLRHLP--VSNISEVPDLDDEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKKAF 147          
The following BLAST results are available for this feature:
BLAST of FC931430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
GAOX2_ORYSJ7.167e-1329.10Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI7.167e-1329.10Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
ACCO1_ARATH2.085e-1231.371-aminocyclopropane-1-carboxylate oxidase OS=Arabi... [more]
G3OX3_ARATH2.724e-1233.33Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis th... [more]
ACCO1_MALDO3.557e-1230.721-aminocyclopropane-1-carboxylate oxidase 1 OS=Mal... [more]
G3OX4_ARATH6.068e-1228.41Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis th... [more]
ACCO4_SOLLC7.924e-1231.371-aminocyclopropane-1-carboxylate oxidase 4 OS=Sol... [more]
G2OX_PHACN3.011e-1129.61Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]
LDOX_MAIZE3.933e-1124.59Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 P... [more]
ACCO3_PETHY3.933e-1130.721-aminocyclopropane-1-carboxylate oxidase 3 OS=Pet... [more]

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Properties
Property NameValue
Genbank descriptionC34105A07EF PostHarvP1 Citrus clementina cDNA clone C34105A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931430 ID=FC931430; Name=FC931430; organism=Citrus clementina; type=EST; length=719bp
GAAGTAAAGCTTCATATATTTTTCTTTAGTTGCAGTTAGATTATCGCTTC
AAAAACTCTGTTTCCATGGCTCCAGTACCAACTTTTCCCGTCAAAGTTGG
TCAAATAGATGATGTTCAAGAGCTGAGAAAAGTCGAACCTAGCACAATTC
CTGAAAGATTTGTTAGAGACTTGACTGAAAGGCCATCGTCACTGGCTACA
GCTCTTTCTCCACCTGGTGGCATTCCCATCATCAACCTCTCAAAACTCAT
GAAGGGCAACCACGATGAATTTCACAATGAAATTTTAAACCTCGCAACTG
CCTGCGAAGAGTGGGGATTCTTTCAGGTGATTGACCATGGGATTGAACTG
AACTTACTCGAGAACATAGAGAAGGTGGCCAAAGATTTTTTCATGCTACC
TTTAGAAGAGAAAAAGAAGTACCCCATGCTACCAGGGACAGTTCAAGGAT
ATGGGCAAGCTTTTGTGTTCTCGGAGAACCAAAAACTTGATTGGTGCAAC
ATGTTTGCCCTTGGTGTCGAGCCTCACTTTATCAGGAACCCAAAACTCTG
GCCAGCAAAGCCAGCTGAGTTCAGTGAAACTCTAGAGACTTACTCAAGAG
ATGTGAGAAAACTTTGCCAGTGTCTGCTCAAGTACGTAGCAATAAGCCTT
GGCTTGAAAGAGAAACTTTTGAAGAATGTTTGGGGTTGCTGTGCAGGCTG
TGAGGATGACTACTACCAC
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