FC931441

Overview
NameFC931441
Unique NameFC931441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13004 contig Ccv1_Contig13004:43..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_PIG (Dihydrolipoyl dehydrogenase, mitochondrial OS=Sus scrofa GN=DLD PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.419e-53
Identity = 107/177 (60.45%), Postives = 129/177 (72.88%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AAIKAAQLG KT CIEK   LGGTCLNVGCIPSKALL++SH YH A    FAS G++ S V ++L  MM QK  AV  LT GI  LFK+NKV  V GYG+    ++V+    +G   V+  KNI+IATGS+V   PGITIDE  +VSSTGAL+L +VP+K+VVIGAG IG+E+GSVW
Sbjct:   56 AAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGALSLKKVPEKMVVIGAGVIGVELGSVW 232          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_RAT (Dihydrolipoyl dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Dld PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.772e-53
Identity = 108/177 (61.02%), Postives = 130/177 (73.45%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AAIKAAQLG KT CIEK   LGGTCLNVGCIPSKALL++SH YH A    FAS G++   V ++L  MM QK  AV  LT GI  LFK+NKV +V G+G+    ++V+  T +G   V+  KNI+IATGS+V   PGITIDE  IVSSTGAL+L +VP+KLVVIGAG IG+E+GSVW
Sbjct:   56 AAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHLAHGKDFASRGIEIPEVRLNLEKMMEQKRSAVKALTGGIAHLFKQNKVVHVNGFGKITGKNQVTATTADGSTQVIGTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKLVVIGAGVIGVELGSVW 232          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_CRIGR (Dihydrolipoyl dehydrogenase, mitochondrial OS=Cricetulus griseus GN=DLD PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.845e-53
Identity = 107/177 (60.45%), Postives = 130/177 (73.45%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AAIKAAQLG KT CIEK   LGGTCLNVGCIPSKALL++SH YH A    FAS G++ S V ++L  MM QK  AV  L  GI  LFK+NKV +V G+G+    ++V+    +G + V+  KNI+IATGS+V   PGITIDE  IVSSTGAL+L +VP+KLVVIGAG IG+E+GSVW
Sbjct:   56 AAIKAAQLGFKTVCIEKNDTLGGTCLNVGCIPSKALLNNSHYYHLAHGRDFASRGIELSEVRLNLEKMMEQKSSAVKALIGGIAHLFKQNKVVHVNGFGKITGKNQVTATKADGSSQVIGTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKLVVIGAGVIGVELGSVW 232          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_MOUSE (Dihydrolipoyl dehydrogenase, mitochondrial OS=Mus musculus GN=Dld PE=1 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.193e-52
Identity = 109/200 (54.50%), Postives = 134/200 (67.00%), Query Frame = 1
Query:  142 RGFASASDENDXXXXXXXXXXXXAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            R +A    E D            AAIK+AQLG KT CIEK   LGGTCLNVGCIPSKALL++SH YH A    FAS G++   V ++L  MM QK  AV  LT GI  LFK+NKV +V G+G+    ++V+    +G   V+  KNI++ATGS+V   PGITIDE  IVSSTGAL+L +VP+KLVVIGAG IG+E+GSVW
Sbjct:   33 RTYADQPIEADVTVIGSGPGGYVAAIKSAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEIPEVRLNLEKMMEQKHSAVKALTGGIAHLFKQNKVVHVNGFGKITGKNQVTATKADGSTQVIDTKNILVATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKLVVIGAGVIGVELGSVW 232          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_TRYCR (Dihydrolipoyl dehydrogenase OS=Trypanosoma cruzi GN=LPD PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.886e-52
Identity = 104/178 (58.43%), Postives = 131/178 (73.60%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            A+IKAAQLG+KT C+EKRGALGGTCLNVGCIPSKALLH++H+YH+A  +FA +G+     V +D   M  QK++AV  LT G+E LFKKNKVTY KG G F +   + V+ ++G   + + K  IIATGS+   LP +  DEK ++SSTGALAL  VPK +VVIG G IGLE+GSVWA
Sbjct:   26 ASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHVYHDAHANFARYGLMGGEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMFETKKTIIATGSEPTELPFLPFDEKVVLSSTGALALPRVPKTMVVIGGGVIGLELGSVWA 203          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_MANSE (Dihydrolipoyl dehydrogenase OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.973e-50
Identity = 101/176 (57.39%), Postives = 129/176 (73.30%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AAIKAAQLG+K   +EK  +LGGTCLNVGCIPSKALLH++H+YH A H F   G++   V+ +  AMM  K  AV  LT GI  LF+KNKV  V+G G  ++P++V V   +G  T V  KNI+IATGS+V   PG+T DEK+I++STGAL+L  VPKK++VIGAG IGLE+GSV+
Sbjct:   45 AAIKAAQLGMKVVSVEKEPSLGGTCLNVGCIPSKALLHNTHLYHMAKHDFKHRGIETGEVKFNFKAMMDYKVNAVKALTGGIAMLFQKNKVKLVRGAGTIVAPNKVEVKGEKGVET-VNTKNILIATGSEVTPFPGVTFDEKQIITSTGALSLESVPKKMLVIGAGVIGLELGSVY 219          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_YEAST (Dihydrolipoyl dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=LPD1 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.738e-49
Identity = 106/214 (49.53%), Postives = 138/214 (64.49%), Query Frame = 1
Query:  121 KYSFSLTRGFASASDENDXXXXXXXXXXXXAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKG------KNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            K +FS T    + +  +D            AAIKAAQLG  T C+EKRG LGGTCLNVGCIPSKALL++SH++H+        G+  +  +++++      KD AV  LT GIE LFKKNKVTY KG G F   +++ V  ++G    VK       KNII+ATGS+V   PGI IDE++IVSSTGAL+L E+PK+L +IG G IGLEMGSV++
Sbjct:   11 KRAFSSTVRTLTINKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYS 224          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH3_PSEPU (Dihydrolipoyl dehydrogenase 3 OS=Pseudomonas putida GN=lpd3 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.277e-48
Identity = 98/177 (55.37%), Postives = 128/177 (72.32%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AAI+A QLGL   C+E R  LGGTCLNVGC+PSKALLH+S +Y  A    FA  G++     ++L  MM QKD++V+ LT+GIE LF+KNKV ++KG+G      +V V   +G  T ++ K+I+IATGS+   LPG+TID +RI+ STGAL+L +VPK LVVIGAG IGLE+GSVW
Sbjct:   18 AAIRAGQLGLTVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGDEFAHLGIEVKPT-LNLAQMMKQKDESVTGLTKGIEYLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETALQAKDIVIATGSEPTPLPGVTIDNQRIIDSTGALSLPQVPKHLVVIGAGVIGLELGSVW 193          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_PSEFL (Dihydrolipoyl dehydrogenase OS=Pseudomonas fluorescens GN=lpd PE=1 SV=3)

HSP 1 Score: 189.504 bits (480), Expect = 1.627e-47
Identity = 100/183 (54.64%), Postives = 127/183 (69.40%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEK------RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AAI+AAQLGLKT CIEK      + ALGGTCLNVGCIPSKALL SS+ YHEA  +F  HG++   V +D+PAM+A+K   V NLT GI  LFK N VT  +G+G+ ++  +V V  ++G   V++ +N+IIA+GS    +P   + +  IV STGAL    VPKKL VIGAG IGLE+GSVWA
Sbjct:   19 AAIRAAQLGLKTACIEKYIGKEGKVALGGTCLNVGCIPSKALLDSSYKYHEAKEAFKVHGIEAKGVTIDVPAMVARKANIVKNLTGGIATLFKANGVTSFEGHGKLLANKQVEVTGLDGKTQVLEAENVIIASGSRPVEIPPAPLSDDIIVDSTGALEFQAVPKKLGVIGAGVIGLELGSVWA 201          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH2_PSEAE (Dihydrolipoamide dehydrogenase OS=Pseudomonas aeruginosa GN=lpdG PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.124e-47
Identity = 100/183 (54.64%), Postives = 127/183 (69.40%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEK------RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AAI+AAQLGLKT CIEK      + ALGGTCLNVGCIPSKALL SS+ YHEA  +F  HG++   V +D+PAM+A+K   V NLT GI  LFK N VT  +G+G+ ++  +V V  ++G   V++ +N+IIA+GS    +P   + +  IV STGAL    VPKKL VIGAG IGLE+GSVWA
Sbjct:   19 AAIRAAQLGLKTACIEKYIGKEGKVALGGTCLNVGCIPSKALLDSSYKYHEAKEAFKVHGIEAKGVTIDVPAMVARKANIVKNLTGGIATLFKANGVTSFEGHGKLLANKQVEVTGLDGKTQVLEAENVIIASGSRPVEIPPAPLTDDIIVDSTGALEFQAVPKKLGVIGAGVIGLELGSVWA 201          
The following BLAST results are available for this feature:
BLAST of FC931441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
DLDH_PIG4.419e-5360.45Dihydrolipoyl dehydrogenase, mitochondrial OS=Sus ... [more]
DLDH_RAT5.772e-5361.02Dihydrolipoyl dehydrogenase, mitochondrial OS=Ratt... [more]
DLDH_CRIGR9.845e-5360.45Dihydrolipoyl dehydrogenase, mitochondrial OS=Cric... [more]
DLDH_MOUSE2.193e-5254.50Dihydrolipoyl dehydrogenase, mitochondrial OS=Mus ... [more]
DLDH_TRYCR4.886e-5258.43Dihydrolipoyl dehydrogenase OS=Trypanosoma cruzi G... [more]
DLDH_MANSE5.973e-5057.39Dihydrolipoyl dehydrogenase OS=Manduca sexta PE=2 ... [more]
DLDH_YEAST1.738e-4949.53Dihydrolipoyl dehydrogenase, mitochondrial OS=Sacc... [more]
DLDH3_PSEPU3.277e-4855.37Dihydrolipoyl dehydrogenase 3 OS=Pseudomonas putid... [more]
DLDH_PSEFL1.627e-4754.64Dihydrolipoyl dehydrogenase OS=Pseudomonas fluores... [more]
DLDH2_PSEAE2.124e-4754.64Dihydrolipoamide dehydrogenase OS=Pseudomonas aeru... [more]

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Properties
Property NameValue
Genbank descriptionC34105B06EF PostHarvP1 Citrus clementina cDNA clone C34105B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931441 ID=FC931441; Name=FC931441; organism=Citrus clementina; type=EST; length=741bp
GAATTCAATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGGTGATGGC
AAGTCTTGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACT
CGTCGAATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTC
GCTTCGGCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGG
TGGTTACGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGT
GCATCGAGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGC
ATCCCCTCTAAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCAT
GCATTCTTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATT
TGCCTGCTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGA
GGTATTGAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATA
TGGCGAGTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTG
GAAACACTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGAC
GTTAAGTCTCTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATC
CACTGGAGCTTTAGCATTGAATGAAGTTCCTAAGAAACTCGTGGTCATTG
GGGCAGGCTACATTGGGCTGGAGATGGGCTCAGTTTGGGCC
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