FC931441

Overview
NameFC931441
Unique NameFC931441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13004 contig Ccv1_Contig13004:43..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH3_PSEAE (Dihydrolipoyl dehydrogenase 3 OS=Pseudomonas aeruginosa GN=lpd3 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.774e-47
Identity = 97/177 (54.80%), Postives = 128/177 (72.32%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS-FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AAI+A QLGLK  C+E R  LGGTCLNVGC+PSKALLH+S +Y  A    FA  G++ S  E+DL  MM QKD++V+ LTRG+E LF+K+KV ++KG+        V V   +GG+  ++ ++I+IATGS+   LPG+ +D +RI+ STGAL L EVP+ LVVIGAG IGLE+GSVW
Sbjct:   19 AAIRAGQLGLKVACVEGRETLGGTCLNVGCMPSKALLHASELYAAASGGEFARLGIRVSP-ELDLAQMMKQKDESVAALTRGVEFLFRKHKVQWIKGWARLQGEGRVGVALADGGHAQLEARDIVIATGSEPAPLPGVPVDNQRILDSTGALELVEVPRHLVVIGAGVIGLELGSVW 194          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_RHOCA (Dihydrolipoyl dehydrogenase OS=Rhodobacter capsulatus GN=lpd PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.181e-47
Identity = 99/176 (56.25%), Postives = 125/176 (71.02%), Query Frame = 1
Query:  214 AIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AI+ AQLGLKT C+E RGALGGTCLNVGCIPSKALLH++H  HE   +F   G+  + V+VD           +   T+GIE LFKKNKVTY++G+G   +P +V V     G+ V   KNI+IATGS+   LPGI IDE+ +V+STGAL+L +VPK +VVIGAG IGLE+GSV+A
Sbjct:   19 AIRCAQLGLKTACVEGRGALGGTCLNVGCIPSKALLHATHELHEVHENFEKMGLMGAKVKVDW--------AKIDGNTKGIEFLFKKNKVTYLRGWGSIPAPGQVKV-----GDEVHTAKNIVIATGSESSGLPGIEIDEQTVVTSTGALSLAKVPKSMVVIGAGVIGLELGSVYA 181          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_AZOVI (Dihydrolipoyl dehydrogenase OS=Azotobacter vinelandii PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.166e-45
Identity = 96/183 (52.46%), Postives = 124/183 (67.76%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEK------RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AAIK+AQLGLKT  IEK      + ALGGTCLNVGCIPSKALL SS+ +HEA  SF  HG+    V +D+P M+A+KD+ V NLT G+  L K N VT  +G+G+ ++  +V V   +G + V+  +N+I+A+GS    +P   +D+  IV STGAL    VP KL VIGAG IGLE+GSVWA
Sbjct:   19 AAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPPAPVDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWA 201          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH2_PSEPU (Dihydrolipoamide dehydrogenase OS=Pseudomonas putida GN=lpdG PE=1 SV=4)

HSP 1 Score: 181.8 bits (460), Expect = 3.392e-45
Identity = 97/183 (53.01%), Postives = 124/183 (67.76%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEK------RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AAIKAAQLGLKT CIEK      + ALGGTCLNVGCIPSKALL SS  Y EA  SF  HG+    V++D+ AM+ +K   V NLT G+  LFK N VT ++G+G+ ++  +V V   +G   V++ +N+I+A+GS    +P   +D+  IV STGAL    VPK+L VIGAG IGLE+GSVWA
Sbjct:   19 AAIKAAQLGLKTACIEKYTDAEGKLALGGTCLNVGCIPSKALLDSSWKYKEAKESFNVHGISTGEVKMDVAAMVGRKAGIVKNLTGGVATLFKANGVTSIQGHGKLLAGKKVEVTKADGTTEVIEAENVILASGSRPIDIPPAPVDQNVIVDSTGALEFQAVPKRLGVIGAGVIGLELGSVWA 201          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_RALEH (Dihydrolipoyl dehydrogenase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=odhL PE=3 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 5.987e-42
Identity = 91/184 (49.46%), Postives = 112/184 (60.87%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKR--------GALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AAI+A QLGL   C E            LGGTCLNVGCIPSKALL SS  +    H    HG+    V+VD+  M+ +KD  V  +T+GIE LF+KNKVT +KGYG+F+  S      ++    VV  K +IIATGS  + LPGI +D   +  + GAL    VPKKL VIGAG IGLE+GSVW
Sbjct:   19 AAIRAGQLGLNVACCEGNPYDDPKGEARLGGTCLNVGCIPSKALLASSEEFENVQHHLGDHGITVGDVKVDVAKMLKRKDDIVGKMTKGIEFLFRKNKVTLLKGYGKFVGKSAEGFQ-VDVAGEVVTAKQVIIATGSKARHLPGIKVDNDLVSDNEGALKFPAVPKKLGVIGAGVIGLELGSVW 201          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_VIBPA (Dihydrolipoyl dehydrogenase OS=Vibrio parahaemolyticus GN=lpd PE=3 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.526e-37
Identity = 85/176 (48.30%), Postives = 112/176 (63.64%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA + A LGL+T  +E+   LGG CLNVGCIPSKALLH S +  EA  + A HGV F   + D+  +   K+K V+ LT G+ G+ K   VT V GYG+F  P+ + V+  EG +TVV   N I+A GS    LP I  ++ RI  ST AL L EVP+KL+++G G IGLEMG+V+
Sbjct:   21 AAFRCADLGLETVLVERYSTLGGVCLNVGCIPSKALLHVSKVIEEAK-AMADHGVVFGEPQTDINKIRIWKEKVVNQLTGGLSGMAKMRNVTVVNGYGKFTGPNSILVEG-EGESTVVNFDNAIVAAGSRPIKLPFIPHEDPRIWDSTDALELKEVPEKLLIMGGGIIGLEMGTVY 194          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH1_BACST (Dihydrolipoyl dehydrogenase OS=Bacillus stearothermophilus GN=pdhD PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 5.799e-37
Identity = 91/177 (51.41%), Postives = 109/177 (61.58%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AAI+AAQLG K T +EK G LGG CLNVGCIPSKAL+ +SH Y +A HS    G+K  +V +D   +   K   V  LT G+EGL K NKV  VKG   F+  + V V   +   T    KN IIATGS    LP       RI+ STGAL L EVPK LVVIG GYIG+E+G+ +A
Sbjct:   24 AAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALISASHRYEQAKHS-EEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYT-FKNAIIATGSRPIELPNFKF-SNRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYA 196          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_STAAW (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=pdhD PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.909e-36
Identity = 90/177 (50.85%), Postives = 111/177 (62.71%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AAI+AAQLG K T +EK G LGG CLNVGCIPSKALLH+SH + EA HS  + GV   SV ++   +   K   V+ LT G+EGL K NKV  VKG   F+  + + V   +   T    KN IIATGS    +P      KR++ STGAL L EVP KLVV+G GYIG E+G+ +A
Sbjct:   24 AAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALLHASHRFVEAQHS-ENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMDEKSAQT-YNFKNAIIATGSRPIEIPNFKFG-KRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFA 196          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_STAAU (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus GN=pdhD PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.909e-36
Identity = 90/177 (50.85%), Postives = 111/177 (62.71%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AAI+AAQLG K T +EK G LGG CLNVGCIPSKALLH+SH + EA HS  + GV   SV ++   +   K   V+ LT G+EGL K NKV  VKG   F+  + + V   +   T    KN IIATGS    +P      KR++ STGAL L EVP KLVV+G GYIG E+G+ +A
Sbjct:   24 AAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALLHASHRFVEAQHS-ENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMDEKSAQT-YNFKNAIIATGSRPIEIPNFKFG-KRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFA 196          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_STAAS (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain MSSA476) GN=pdhD PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.909e-36
Identity = 90/177 (50.85%), Postives = 111/177 (62.71%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AAI+AAQLG K T +EK G LGG CLNVGCIPSKALLH+SH + EA HS  + GV   SV ++   +   K   V+ LT G+EGL K NKV  VKG   F+  + + V   +   T    KN IIATGS    +P      KR++ STGAL L EVP KLVV+G GYIG E+G+ +A
Sbjct:   24 AAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALLHASHRFVEAQHS-ENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMDEKSAQT-YNFKNAIIATGSRPIEIPNFKFG-KRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFA 196          
The following BLAST results are available for this feature:
BLAST of FC931441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
DLDH3_PSEAE2.774e-4754.80Dihydrolipoyl dehydrogenase 3 OS=Pseudomonas aerug... [more]
DLDH_RHOCA6.181e-4756.25Dihydrolipoyl dehydrogenase OS=Rhodobacter capsula... [more]
DLDH_AZOVI1.166e-4552.46Dihydrolipoyl dehydrogenase OS=Azotobacter vinelan... [more]
DLDH2_PSEPU3.392e-4553.01Dihydrolipoamide dehydrogenase OS=Pseudomonas puti... [more]
DLDH_RALEH5.987e-4249.46Dihydrolipoyl dehydrogenase OS=Ralstonia eutropha ... [more]
DLDH_VIBPA1.526e-3748.30Dihydrolipoyl dehydrogenase OS=Vibrio parahaemolyt... [more]
DLDH1_BACST5.799e-3751.41Dihydrolipoyl dehydrogenase OS=Bacillus stearother... [more]
DLDH_STAAW4.909e-3650.85Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAU4.909e-3650.85Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAS4.909e-3650.85Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]

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Properties
Property NameValue
Genbank descriptionC34105B06EF PostHarvP1 Citrus clementina cDNA clone C34105B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931441 ID=FC931441; Name=FC931441; organism=Citrus clementina; type=EST; length=741bp
GAATTCAATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGGTGATGGC
AAGTCTTGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACT
CGTCGAATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTC
GCTTCGGCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGG
TGGTTACGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGT
GCATCGAGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGC
ATCCCCTCTAAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCAT
GCATTCTTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATT
TGCCTGCTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGA
GGTATTGAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATA
TGGCGAGTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTG
GAAACACTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGAC
GTTAAGTCTCTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATC
CACTGGAGCTTTAGCATTGAATGAAGTTCCTAAGAAACTCGTGGTCATTG
GGGCAGGCTACATTGGGCTGGAGATGGGCTCAGTTTGGGCC
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