FC931441

Overview
NameFC931441
Unique NameFC931441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13004 contig Ccv1_Contig13004:43..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_KLEP7 (Soluble pyridine nucleotide transhydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=sthA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.878e-11
Identity = 45/178 (25.28%), Postives = 81/178 (45.51%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS--FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA+   + G +   IE+   +GG C + G IPSKAL H+     E   +  ++ H     S   D+   +   D  ++  T   +G +++N    ++G   F+    ++++  +G    V  +  +IA GS       +     RI  S   L+L   P+ +++ GAG IG E  S++
Sbjct:   21 AAMGLVKQGARVAVIERYHNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADI---LNHADSVINQQTHMRQGFYERNHCEILQGNAHFVDEHTLALECHDGTVETVTAEKFVIACGSRPYHPADVDFHHPRIYDSDSILSLQHEPRHVIIYGAGVIGCEYASIF 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_ENT38 (Soluble pyridine nucleotide transhydrogenase OS=Enterobacter sp. (strain 638) GN=sthA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.878e-11
Identity = 44/178 (24.72%), Postives = 82/178 (46.07%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS--FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA+   + G +   IE+   +GG C + G IPSKAL H+     E   +  ++ H     S   D+   +   D  ++  TR  +G +++N    ++G   F+    +++   +G    +  +  +IA GS       +     R+  S   L+L+  P+ +++ GAG IG E  S++
Sbjct:   21 AAMGLVKQGARVAVIERYHNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADI---LNHADTVINQQTRMRQGFYERNHCEILQGDAHFVDEHTLALKCHDGSVETITAEKFVIACGSRPYHPDDVDFSHPRVYDSDSILSLHHEPRHVLIYGAGVIGCEYASIF 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_CHRSD (Soluble pyridine nucleotide transhydrogenase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=sthA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 51/181 (28.18%), Postives = 78/181 (43.09%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AAI AA+ G +   +EK+ A+GG C + G IPSKAL H     M       F   G    FS      P ++ +    +          + +N++    G   F     ++V   + G   +  +  +IATGS       I     RI  S   L L+  P+ L++ GAG IG E  S+++
Sbjct:   20 AAINAAKHGKRVAIVEKQQAVGGNCTHWGTIPSKALRHQVKQIMQFNTNRMFRDIGEPRWFS-----FPRVLERSKVTIDQQVEMRTQFYSRNRINLFFGVARFRDEHTLTVRDNQDGVEELCAQQFVIATGSRPYRPADINFRHPRIYCSDTILGLSHTPRTLIIFGAGVIGSEYASIFS 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_SODGM (Soluble pyridine nucleotide transhydrogenase OS=Sodalis glossinidius (strain morsitans) GN=sthA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.138e-11
Identity = 46/176 (26.14%), Postives = 75/176 (42.61%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA+   + G +   IE+   +GG C + G IPSKAL  +     E   S   HG            ++   D+ ++  T   +G +++N      G   F+   +V +   +     +  +NI+IA GS       +  D  RI  S   L L   P  +++ GAG IG E  S++
Sbjct:   21 AAMGLTKRGARVAIIERYDNVGGGCTHWGTIPSKALRQAVSRIIEINQS-PLHG-NTRLPHTGFSDILCHADQVINQQTHMRQGFYERNHCQIFTGEASFVDEHQVQIHYGDNTTETLSAENIVIACGSRPYQPQDVDFDHPRIYDSDSILDLKHDPHHVIIYGAGVIGCEYASIF 194          
The following BLAST results are available for this feature:
BLAST of FC931441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
STHA_KLEP71.878e-1125.28Soluble pyridine nucleotide transhydrogenase OS=Kl... [more]
STHA_ENT381.878e-1124.72Soluble pyridine nucleotide transhydrogenase OS=En... [more]
STHA_CHRSD4.185e-1128.18Soluble pyridine nucleotide transhydrogenase OS=Ch... [more]
STHA_SODGM7.138e-1126.14Soluble pyridine nucleotide transhydrogenase OS=So... [more]

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Properties
Property NameValue
Genbank descriptionC34105B06EF PostHarvP1 Citrus clementina cDNA clone C34105B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931441 ID=FC931441; Name=FC931441; organism=Citrus clementina; type=EST; length=741bp
GAATTCAATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGGTGATGGC
AAGTCTTGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACT
CGTCGAATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTC
GCTTCGGCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGG
TGGTTACGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGT
GCATCGAGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGC
ATCCCCTCTAAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCAT
GCATTCTTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATT
TGCCTGCTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGA
GGTATTGAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATA
TGGCGAGTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTG
GAAACACTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGAC
GTTAAGTCTCTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATC
CACTGGAGCTTTAGCATTGAATGAAGTTCCTAAGAAACTCGTGGTCATTG
GGGCAGGCTACATTGGGCTGGAGATGGGCTCAGTTTGGGCC
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