FC931441

Overview
NameFC931441
Unique NameFC931441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13004 contig Ccv1_Contig13004:43..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_STAAR (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain MRSA252) GN=pdhD PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.909e-36
Identity = 90/177 (50.85%), Postives = 111/177 (62.71%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AAI+AAQLG K T +EK G LGG CLNVGCIPSKALLH+SH + EA HS  + GV   SV ++   +   K   V+ LT G+EGL K NKV  VKG   F+  + + V   +   T    KN IIATGS    +P      KR++ STGAL L EVP KLVV+G GYIG E+G+ +A
Sbjct:   24 AAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALLHASHRFVEAQHS-ENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMDEKSAQT-YNFKNAIIATGSRPIEIPNFKFG-KRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFA 196          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_STAAN (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain N315) GN=pdhD PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.909e-36
Identity = 90/177 (50.85%), Postives = 111/177 (62.71%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AAI+AAQLG K T +EK G LGG CLNVGCIPSKALLH+SH + EA HS  + GV   SV ++   +   K   V+ LT G+EGL K NKV  VKG   F+  + + V   +   T    KN IIATGS    +P      KR++ STGAL L EVP KLVV+G GYIG E+G+ +A
Sbjct:   24 AAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALLHASHRFVEAQHS-ENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMDEKSAQT-YNFKNAIIATGSRPIEIPNFKFG-KRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFA 196          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_STAAM (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhD PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.909e-36
Identity = 90/177 (50.85%), Postives = 111/177 (62.71%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AAI+AAQLG K T +EK G LGG CLNVGCIPSKALLH+SH + EA HS  + GV   SV ++   +   K   V+ LT G+EGL K NKV  VKG   F+  + + V   +   T    KN IIATGS    +P      KR++ STGAL L EVP KLVV+G GYIG E+G+ +A
Sbjct:   24 AAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALLHASHRFVEAQHS-ENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMDEKSAQT-YNFKNAIIATGSRPIEIPNFKFG-KRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFA 196          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_STAAC (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain COL) GN=pdhD PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.909e-36
Identity = 90/177 (50.85%), Postives = 111/177 (62.71%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AAI+AAQLG K T +EK G LGG CLNVGCIPSKALLH+SH + EA HS  + GV   SV ++   +   K   V+ LT G+EGL K NKV  VKG   F+  + + V   +   T    KN IIATGS    +P      KR++ STGAL L EVP KLVV+G GYIG E+G+ +A
Sbjct:   24 AAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALLHASHRFVEAQHS-ENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMDEKSAQT-YNFKNAIIATGSRPIEIPNFKFG-KRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFA 196          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH1_BACSU (Dihydrolipoyl dehydrogenase OS=Bacillus subtilis GN=pdhD PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.411e-36
Identity = 89/177 (50.28%), Postives = 108/177 (61.02%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AAI+AAQLG K T +EK   LGG CLNVGCIPSKAL+++ H Y  A HS    G+   +V VD   +   K   V+ LT G+ GL K NKV  VKG   F+  + V V       T    KN IIATGS    LP     E R+++STGALAL E+PKKLVVIG GYIG E+G+ +A
Sbjct:   24 AAIRAAQLGQKVTVVEK-ATLGGVCLNVGCIPSKALINAGHRYENAKHS-DDMGITAENVTVDFTKVQEWKASVVNKLTGGVAGLLKGNKVDVVKGEAYFVDSNSVRVMDENSAQTYTF-KNAIIATGSRPIELPNFKYSE-RVLNSTGALALKEIPKKLVVIGGGYIGTELGTAYA 196          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_VIBCH (Dihydrolipoyl dehydrogenase OS=Vibrio cholerae GN=lpd PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.428e-35
Identity = 82/176 (46.59%), Postives = 107/176 (60.80%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA + A LGL T  IE+   LGG CLNVGCIPSKALLH + +  EA  +   HG+ F   + D+  +   K+K ++ LT G+ G+ K  KV  V GYG+F  P+ + VD  E G TVV   N I+A GS    LP I  ++ RI  ST AL L EVP KL+++G G IGLEM +V+
Sbjct:   21 AAFRCADLGLDTVIIERYNTLGGVCLNVGCIPSKALLHVAKVIEEAK-ALTEHGIVFGEPKTDIDKVRLWKEKVINQLTGGLAGMAKMRKVNVVNGYGKFTGPNTIEVDG-EEGKTVVTFDNAIVAAGSRPIKLPFIPHEDPRIWDSTDALELKEVPGKLLIMGGGIIGLEMATVY 194          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_SHIFL (Dihydrolipoyl dehydrogenase OS=Shigella flexneri GN=lpdA PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.209e-34
Identity = 80/176 (45.45%), Postives = 109/176 (61.93%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA + A LGL+T  +E+   LGG CLNVGCIPSKALLH + +  EA  + A HG+ F   + D+  +   K+K ++ LT G+ G+ K  KV  V G G+F   + + V+  E G TV+   N IIA GS    LP I  ++ RI  ST AL L EVP++L+V+G G IGLEMG+V+
Sbjct:   21 AAFRCADLGLETVIVERYNTLGGVCLNVGCIPSKALLHVAKVIEEAK-ALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTLEVEG-ENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLVMGGGIIGLEMGTVY 194          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_HAEIN (Dihydrolipoyl dehydrogenase OS=Haemophilus influenzae GN=lpdA PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.209e-34
Identity = 81/176 (46.02%), Postives = 107/176 (60.80%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA + A LGL+T  +E+   LGG CLNVGCIPSKALLH + +  EA H+   +G+ FS   ++L  + A K+  V+ LT G+ G+ K  KVT V+G   F     +     +G  T VK  N IIA GS    LP I  ++ RI  ST AL L EVPKKL+++G G IGLEMG+V+
Sbjct:   21 AAFRCADLGLETVIVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKHA-NKNGIYFSEPRIELDEVRAGKEAVVAKLTGGLAGMAKARKVTVVEGLATFTDSHTLVARDRDGNPTTVKFDNAIIAAGSRPVQLPFIPHEDPRIWDSTDALKLKEVPKKLLIMGGGIIGLEMGTVY 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_ECOLI (Dihydrolipoyl dehydrogenase OS=Escherichia coli (strain K12) GN=lpdA PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.209e-34
Identity = 80/176 (45.45%), Postives = 109/176 (61.93%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA + A LGL+T  +E+   LGG CLNVGCIPSKALLH + +  EA  + A HG+ F   + D+  +   K+K ++ LT G+ G+ K  KV  V G G+F   + + V+  E G TV+   N IIA GS    LP I  ++ RI  ST AL L EVP++L+V+G G IGLEMG+V+
Sbjct:   21 AAFRCADLGLETVIVERYNTLGGVCLNVGCIPSKALLHVAKVIEEAK-ALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTLEVEG-ENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLVMGGGIIGLEMGTVY 194          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_ECOL6 (Dihydrolipoyl dehydrogenase OS=Escherichia coli O6 GN=lpdA PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.209e-34
Identity = 80/176 (45.45%), Postives = 109/176 (61.93%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA + A LGL+T  +E+   LGG CLNVGCIPSKALLH + +  EA  + A HG+ F   + D+  +   K+K ++ LT G+ G+ K  KV  V G G+F   + + V+  E G TV+   N IIA GS    LP I  ++ RI  ST AL L EVP++L+V+G G IGLEMG+V+
Sbjct:   21 AAFRCADLGLETVIVERYNTLGGVCLNVGCIPSKALLHVAKVIEEAK-ALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTLEVEG-ENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLVMGGGIIGLEMGTVY 194          
The following BLAST results are available for this feature:
BLAST of FC931441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
DLDH_STAAR4.909e-3650.85Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAN4.909e-3650.85Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAM4.909e-3650.85Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAC4.909e-3650.85Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH1_BACSU6.411e-3650.28Dihydrolipoyl dehydrogenase OS=Bacillus subtilis G... [more]
DLDH_VIBCH1.428e-3546.59Dihydrolipoyl dehydrogenase OS=Vibrio cholerae GN=... [more]
DLDH_SHIFL1.209e-3445.45Dihydrolipoyl dehydrogenase OS=Shigella flexneri G... [more]
DLDH_HAEIN1.209e-3446.02Dihydrolipoyl dehydrogenase OS=Haemophilus influen... [more]
DLDH_ECOLI1.209e-3445.45Dihydrolipoyl dehydrogenase OS=Escherichia coli (s... [more]
DLDH_ECOL61.209e-3445.45Dihydrolipoyl dehydrogenase OS=Escherichia coli O6... [more]

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Properties
Property NameValue
Genbank descriptionC34105B06EF PostHarvP1 Citrus clementina cDNA clone C34105B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931441 ID=FC931441; Name=FC931441; organism=Citrus clementina; type=EST; length=741bp
GAATTCAATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGGTGATGGC
AAGTCTTGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACT
CGTCGAATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTC
GCTTCGGCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGG
TGGTTACGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGT
GCATCGAGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGC
ATCCCCTCTAAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCAT
GCATTCTTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATT
TGCCTGCTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGA
GGTATTGAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATA
TGGCGAGTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTG
GAAACACTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGAC
GTTAAGTCTCTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATC
CACTGGAGCTTTAGCATTGAATGAAGTTCCTAAGAAACTCGTGGTCATTG
GGGCAGGCTACATTGGGCTGGAGATGGGCTCAGTTTGGGCC
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