FC931441

Overview
NameFC931441
Unique NameFC931441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13004 contig Ccv1_Contig13004:43..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_ECO57 (Dihydrolipoyl dehydrogenase OS=Escherichia coli O157:H7 GN=lpdA PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.209e-34
Identity = 80/176 (45.45%), Postives = 109/176 (61.93%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA + A LGL+T  +E+   LGG CLNVGCIPSKALLH + +  EA  + A HG+ F   + D+  +   K+K ++ LT G+ G+ K  KV  V G G+F   + + V+  E G TV+   N IIA GS    LP I  ++ RI  ST AL L EVP++L+V+G G IGLEMG+V+
Sbjct:   21 AAFRCADLGLETVIVERYNTLGGVCLNVGCIPSKALLHVAKVIEEAK-ALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTLEVEG-ENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLVMGGGIIGLEMGTVY 194          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_CHLMU (Dihydrolipoyl dehydrogenase OS=Chlamydia muridarum GN=lpdA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.746e-33
Identity = 78/178 (43.82%), Postives = 114/178 (64.04%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEK--RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AAI AAQ GLKT  IE+R A GGTCLN GCIPSKALL S+ +  +  H+    G+  +   +D PAM+ +KD  V ++  G+ GL + NK+T   G G  IS +EV +  +    +V+K ++II+ATGS+ ++ PG+   ++  RI+ STG L L E+P+K+ +IG G IG E  S++
Sbjct:   19 AAITAAQAGLKTALIEEREA-GGTCLNRGCIPSKALLASAEIVAQIRHA-DQFGIHINGFSIDYPAMVQRKDTVVRSIRDGLNGLIRSNKITVFSGRGSLISSTEVKI--LGETPSVIKAQSIILATGSEPRAFPGVPFSQQSPRILCSTGVLNLKEIPQKMAIIGGGVIGCEFASLF 192          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_CHLTR (Dihydrolipoyl dehydrogenase OS=Chlamydia trachomatis GN=lpdA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.665e-33
Identity = 78/178 (43.82%), Postives = 111/178 (62.36%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGI--TIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AAI AAQ GLKT  IEKR A GGTCLN GCIPSKALL  + +  +  H+    G+      ++ PAM+ +KD  V ++  G+ GL + NK+T   G G  IS +EV +  +    +V+K  +II+ATGS+ ++ PGI  + +  RI+ STG L L E+P+K+ +IG G IG E  S++
Sbjct:   19 AAITAAQAGLKTALIEKREA-GGTCLNRGCIPSKALLAGAEVVTQIRHA-DQFGIHVEGFSINYPAMVQRKDSVVRSIRDGLNGLIRSNKITVFSGRGSLISSTEVKI--LGENPSVIKAHSIILATGSEPRAFPGIPFSAESPRILCSTGVLNLKEIPQKMAIIGGGVIGCEFASLF 192          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH2_HALMA (Dihydrolipoyl dehydrogenase 2 OS=Haloarcula marismortui GN=lpdA2 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.132e-32
Identity = 86/179 (48.04%), Postives = 115/179 (64.25%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSV-DTIEG-GNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AAI+ AQLGL TT +E R A GGTCLN GCIPSKAL+ +S + H+A  +  S GV F+   VD+  M   KD  V+ LTRG+E L K   V  V+G  EF+    V V    EG G+  +  ++ I+ATGS   ++PG   D + I+SS  ALAL  VP+KL+V+GAGYIG+E+ +V+A
Sbjct:   24 AAIRGAQLGLDTTLVE-RDAYGGTCLNHGCIPSKALISASDVAHDARQA-ESMGV-FADPAVDMAGMTEWKDGVVTRLTRGVESLCKNAGVNLVEGTAEFVDDGTVRVAHGGEGQGSESLSFEHAIVATGSRPMAVPGFEFDGEHILSSKDALALESVPEKLLVVGAGYIGMELSTVFA 199          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH1_PSEAE (Dihydrolipoyl dehydrogenase OS=Pseudomonas aeruginosa GN=lpdV PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.300e-32
Identity = 74/178 (41.57%), Postives = 114/178 (64.04%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH--SFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AAI+A QLG+ T  +E   ALGGTCLNVGCIPSKAL+H++  Y +A H  S ++ G++  +  +D+   +  KD  V  LT G+  L KK+ V  V+G+   +    V+V+   GG+  ++ +++++A GS    LP + +  K ++SST ALA   +PK+LVV+G GYIGLE+G+ +
Sbjct:   21 AAIRAGQLGIPTVLVEG-AALGGTCLNVGCIPSKALIHAAEEYLKARHYASRSALGIQVQAPSIDIARTVEWKDAIVDRLTSGVAALLKKHGVDVVQGWARILDGKSVAVELAGGGSQRIECEHLLLAAGSQSVELPILPLGGK-VISSTEALAPGSLPKRLVVVGGGYIGLELGTAY 196          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_CHLPN (Dihydrolipoyl dehydrogenase OS=Chlamydia pneumoniae GN=lpdA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.335e-32
Identity = 77/176 (43.75%), Postives = 108/176 (61.36%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AAI AAQ  L+T  IE+  A GGTCLN GCIPSKAL+  +++     H+    G+      +D PAM  +K+  V  + +G+EGL + NK+T +KG G  +S +EV V  I    T++K  +II+ATGS+ +  PG+     RI+SSTG L L  +PKKL +IG G IG E  S++
Sbjct:   19 AAITAAQSKLRTALIEEDQA-GGTCLNRGCIPSKALIAGANVVSHIKHA-EQFGIHVDGYTIDYPAMAKRKNTVVQGIRQGLEGLIRSNKITVLKGTGSLVSSTEVKV--IGQDTTIIKANHIILATGSEPRPFPGVPF-SSRILSSTGILELEVLPKKLAIIGGGVIGCEFASLF 189          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_ZYMMO (Dihydrolipoyl dehydrogenase OS=Zymomonas mobilis GN=lpd PE=3 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 1.807e-30
Identity = 73/177 (41.24%), Postives = 110/177 (62.15%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AAI+AAQL LK   +E R  LGG CLN GCIP+K+LL S+ +YHE M +  ++G+     + DL  ++A+  +  + L  G++ L +KNKV  + G G+     ++ V+T EG   +++ K+IIIATG+  + LP +  D K I +   AL    +PKKL+VIG+G IG+E  S +A
Sbjct:   19 AAIRAAQLNLKVALVE-RVHLGGICLNWGCIPTKSLLRSAEVYHE-MQNAEAYGLTSFKPDFDLDKIIARSREVATRLASGVKTLLRKNKVEVISGVGQLTGNQQMLVETTEGEEKILEAKDIIIATGARARQLPNVHSDGKHIWTYHHALKPPAMPKKLLVIGSGAIGIEFASFYA 193          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH2_BACSU (Dihydrolipoyl dehydrogenase OS=Bacillus subtilis GN=bfmBC PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.025e-30
Identity = 74/183 (40.44%), Postives = 109/183 (59.56%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPS-------EVSVDTIEGG-NTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSV 735
            AAI+AAQLGLKT  +EK   LGGTCL+ GCIPSKALL S+ +Y  A  +    GV+ + V ++   +  +K   V  L  G+  L KK K+    GYG  + PS        +SV+   G  N ++  K +IIATGS  + LPG+ +D K +++S  AL + E+P+ ++++G G IG+E  S+
Sbjct:   19 AAIRAAQLGLKTAVVEKE-KLGGTCLHKGCIPSKALLRSAEVYRTAREA-DQFGVETAGVSLNFEKVQQRKQAVVDKLAAGVNHLMKKGKIDVYTGYGRILGPSIFSPLPGTISVERGNGEENDMLIPKQVIIATGSRPRMLPGLEVDGKSVLTSDEALQMEELPQSIIIVGGGVIGIEWASM 199          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH3_HALMA (Dihydrolipoyl dehydrogenase 3 OS=Haloarcula marismortui GN=lpdA3 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.812e-29
Identity = 81/179 (45.25%), Postives = 110/179 (61.45%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSV-DTIEG-GNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AAI+AAQL L  T +EK G  GG CLN GCIPSKAL+H S +  EA  +    G+ ++   V L  M+  KD  V  LT GIE L     V  +KG  EF   ++V +    EG G+  +K +N IIATGS    +PG   +++RIVSS GAL  + VP +LV++GAGYIG+E+ +V++
Sbjct:   24 AAIRAAQLALDVTLVEK-GEYGGACLNRGCIPSKALIHGSKLASEAGQA-EELGI-YADPTVALDEMINWKDGVVDQLTSGIEQLCTAAGVNLLKGTAEFADENKVRIIHQGEGQGSESLKFENCIIATGSRPIEIPGFGFEDERIVSSDGALNFDTVPDELVIVGAGYIGMELATVYS 199          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_HALSA (Dihydrolipoyl dehydrogenase OS=Halobacterium salinarium GN=lpdA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.209e-28
Identity = 73/181 (40.33%), Postives = 111/181 (61.33%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGN----TVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AAI+A QLGL  T +EK  A GGTCLN GCIPSKA++ +S + HEA H+    GV ++  +VD+  M+  KD  V  LT G+E L K N V  ++G  EF    ++ V  + GG+      ++ ++ I++TGS    +PG    +  ++ S  ALA+ E+P  +V++G GYIG+E+ +V+A
Sbjct:   24 AAIRAGQLGLDVTLVEK-DAYGGTCLNYGCIPSKAMITASGVAHEAGHA-EEMGV-YADPDVDVAEMVDWKDGVVDQLTGGVEKLCKANGVNLIEGRAEFAGSDKLRV--VHGGDGQGSETIEYEHAIVSTGSRPIEVPGFDFGDDPVLDSRQALAMAELPSSMVIVGGGYIGMELSTVFA 199          
The following BLAST results are available for this feature:
BLAST of FC931441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
DLDH_ECO571.209e-3445.45Dihydrolipoyl dehydrogenase OS=Escherichia coli O1... [more]
DLDH_CHLMU1.746e-3343.82Dihydrolipoyl dehydrogenase OS=Chlamydia muridarum... [more]
DLDH_CHLTR8.665e-3343.82Dihydrolipoyl dehydrogenase OS=Chlamydia trachomat... [more]
DLDH2_HALMA1.132e-3248.04Dihydrolipoyl dehydrogenase 2 OS=Haloarcula marism... [more]
DLDH1_PSEAE4.300e-3241.57Dihydrolipoyl dehydrogenase OS=Pseudomonas aerugin... [more]
DLDH_CHLPN7.335e-3243.75Dihydrolipoyl dehydrogenase OS=Chlamydia pneumonia... [more]
DLDH_ZYMMO1.807e-3041.24Dihydrolipoyl dehydrogenase OS=Zymomonas mobilis G... [more]
DLDH2_BACSU4.025e-3040.44Dihydrolipoyl dehydrogenase OS=Bacillus subtilis G... [more]
DLDH3_HALMA5.812e-2945.25Dihydrolipoyl dehydrogenase 3 OS=Haloarcula marism... [more]
DLDH_HALSA2.209e-2840.33Dihydrolipoyl dehydrogenase OS=Halobacterium salin... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34105B06EF PostHarvP1 Citrus clementina cDNA clone C34105B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931441 ID=FC931441; Name=FC931441; organism=Citrus clementina; type=EST; length=741bp
GAATTCAATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGGTGATGGC
AAGTCTTGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACT
CGTCGAATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTC
GCTTCGGCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGG
TGGTTACGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGT
GCATCGAGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGC
ATCCCCTCTAAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCAT
GCATTCTTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATT
TGCCTGCTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGA
GGTATTGAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATA
TGGCGAGTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTG
GAAACACTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGAC
GTTAAGTCTCTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATC
CACTGGAGCTTTAGCATTGAATGAAGTTCCTAAGAAACTCGTGGTCATTG
GGGCAGGCTACATTGGGCTGGAGATGGGCTCAGTTTGGGCC
back to top