FC931441

Overview
NameFC931441
Unique NameFC931441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13004 contig Ccv1_Contig13004:43..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH1_PSEPU (Dihydrolipoyl dehydrogenase OS=Pseudomonas putida GN=lpdV PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.393e-28
Identity = 71/175 (40.57%), Postives = 107/175 (61.14%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH--SFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMG 729
            AAI+A QLG+ T  +E + ALGGTCLN+GCIPSKAL+H +  +H+A      +  G+  +S  +D+   +A KD  V  LT G+  L KK+ V  V G+ + +   +V VD        ++ +++++ATGS    LP + +    ++SST ALA   +P+ LVV+G GYIGLE+G
Sbjct:   21 AAIRAGQLGIPTVLVEGQ-ALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVD-----GQRIQCEHLLLATGSSSVELPMLPLGGP-VISSTEALAPKALPQHLVVVGGGYIGLELG 188          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_BUCAI (Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=lpdA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.870e-27
Identity = 70/177 (39.55%), Postives = 101/177 (57.06%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AA + A LGL T  IE+   LGG CLNVGCIPSK LLH + +  EA     + GV F+  ++D+  +   K   V+ LT G+  + KK K+   +G+  F +   + V   E   T+    N IIATGS    +P I  D+ RI  ST AL+L ++P   ++IG+G IGLEM ++++
Sbjct:   21 AAFRCADLGLDTVLIERYDKLGGVCLNVGCIPSKTLLHIAKVIKEAKELHKT-GVSFNKPDIDIKKIKNWKQHIVNKLTDGLSSMRKKRKIRIFQGHAIFETDKSLCVTNTEDKFTIF-FDNAIIATGSKPIKIPSIPHDDIRIWDSTDALSLKKIPNNFLIIGSGIIGLEMATIYS 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH3_BACSU (Dihydrolipoyl dehydrogenase OS=Bacillus subtilis GN=acoL PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.189e-27
Identity = 68/179 (37.99%), Postives = 109/179 (60.89%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF--SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AA+ AAQ G     I+K G LGGTCLN GCIP+K+LL S+++  +  H+  S G++    ++ VD   M ++K + VS L +G++ L KKN++  VKG   F+S  ++ ++  E G  + +   ++IA+GS+   LP    D + I+ S  AL+L+E+P  LV++G G IG E   ++A
Sbjct:   15 AAVSAAQQGRNVLLIDK-GKLGGTCLNEGCIPTKSLLESANVLDKIKHA-DSFGIELPAGAISVDWSKMQSRKQQVVSQLVQGVQYLMKKNQIQVVKGTASFLSERKLLIEG-ENGKEIREADQVLIASGSEPIELPFAPFDGEWILDSKDALSLSEIPSSLVIVGGGVIGCEYAGLFA 190          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_THESC (Dihydrolipoyl dehydrogenase OS=Thermus scotoductus GN=lpd PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 9.279e-27
Identity = 75/177 (42.37%), Postives = 105/177 (59.32%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNE-VPKKLVVIGAGYIGLEMGSVW 738
            AAI+ AQLGLK   +E    +GG CLNVGCIP+KALLH++   H  +      G+K +  E+DL  + A +D  V  LT G+ GL K NKV  ++G+  F  P E+ V+    G T    ++ IIATGS+   L G    E  +  ST AL + E +PK+L+VIG G +GLE+G ++
Sbjct:   18 AAIRGAQLGLKVLAVEA-AEVGGVCLNVGCIPTKALLHAAETVHH-LKGAEGFGLK-AKPELDLKKLGAWRDGVVKKLTGGVAGLLKGNKVELLRGFARFKGPREIEVN----GET-YGAQSFIIATGSEPMPLKGFPFGED-VWDSTRALRVEEGIPKRLLVIGGGAVGLELGQIY 185          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_BUCAP (Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=lpdA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.279e-27
Identity = 68/177 (38.42%), Postives = 104/177 (58.76%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AA + A LGL+T  IE +  LGG CLNVGCIPSK+LLH + +  +A    +  GV F+   +D+  +   K+K +  LT G+  + +K KV  V+G   F +   V V   +   T+   K+ IIATGS    +P +  ++ RI +ST AL+L  +P + ++IG G IGLEM ++++
Sbjct:   21 AAFRCADLGLETVLIEHQERLGGVCLNVGCIPSKSLLHIAKIIKDA-SELSESGVFFNKPIIDIKKINNWKEKIIKKLTTGLSNMGEKRKVRIVQGKALFNTDHSVLVKNKKNDFTIF-FKHAIIATGSKPIKIPSLPNEDNRIWNSTDALSLKSIPNRFLIIGGGIIGLEMATIYS 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_BUCBP (Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=lpdA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.212e-26
Identity = 65/177 (36.72%), Postives = 105/177 (59.32%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AA + + LGL    IE+  +LGG CLNVGCIPSK LLH + +  + +   +  G+ F  ++++L  +   + K + + + GI  L +K  V  + GY +F+  + + V   E  + VV    I+IATGS  K L  I  D+ RI +S+ A+++  +PKKL++IG G IGLEM ++++
Sbjct:   22 AAFRCSDLGLNVVLIEQYYSLGGVCLNVGCIPSKYLLHIAKVIKD-VKKLSRIGISFEKLDINLKEIQCNQKKIIESFSSGISNLARKRNVRIIFGYAKFLDANSIFVQG-EHDSYVVSFNKIVIATGSLSKKLSYIPYDDIRIWNSSFAVSIPSIPKKLLIIGGGIIGLEMATIYS 196          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_HALVO (Dihydrolipoyl dehydrogenase OS=Halobacterium volcanii GN=lpdA PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.700e-26
Identity = 75/179 (41.90%), Postives = 108/179 (60.34%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSV-DTIEG-GNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AAI+AAQ G+ TT +EK  A GGTCLN GCIPSKAL+  +++ HEA ++    G+    V VD+  +   K   V  LT G+E L K N V  V+G   F   + V +    EG G+  ++ ++ IIATGS V  +PG    ++ + SS  AL  + VP++LVV+G GYIG+E+ + +A
Sbjct:   24 AAIRAAQNGIDTTLVEK-DAYGGTCLNYGCIPSKALITGANLAHEAGNA-EEMGIHADPV-VDMSQLRDWKSGVVDQLTGGVEKLCKANGVNLVEGTARFKDENAVRIAHGGEGQGSETIEFEHCIIATGSRVIQIPGFDFGDEPVWSSRDALEADTVPERLVVVGGGYIGMELSTTFA 199          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_CHLTE (Dihydrolipoyl dehydrogenase OS=Chlorobium tepidum GN=lpd PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.700e-26
Identity = 69/177 (38.98%), Postives = 102/177 (57.63%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AAI AA+ GLKT CI ++  LGG C+N GCIP+KALL S+ ++  A +   + GV   +V  DL   + +        ++G+  L KK  V  + G       + V V   +G   ++  KNII+ATGS  + +PG+  D K+I++S  AL L EVPK ++V+G G IG+EM   +A
Sbjct:   25 AAIHAARYGLKT-CIVEKAVLGGVCVNWGCIPTKALLRSAEVFDLAKNP-ETFGVNVGNVSFDLAQAVKRSRNVALKSSKGVAYLLKKAAVEVLAGEAVLTGGAGVMVTMPDGSVRMLGAKNIIVATGSTPRVIPGLEPDGKKIITSREALILKEVPKSMIVVGGGAIGVEMAWFYA 199          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_MYCTU (Dihydrolipoyl dehydrogenase OS=Mycobacterium tuberculosis GN=lpd PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.605e-26
Identity = 68/175 (38.86%), Postives = 95/175 (54.29%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSV 735
            AAI+AAQLGL T  +E +   GG CLNVGCIPSKALL ++ + H       + G+    V  D      +  K       G+  L KKNK+T + GYG F   + + VD  +GG   V   N IIATGS  + +PG ++    +V+    +   E+PK +++ GAG IG+E G V
Sbjct:   18 AAIRAAQLGLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGIS-GEVTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSL-SANVVTYEEQILSRELPKSIIIAGAGAIGMEFGYV 189          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_MYCBO (Dihydrolipoyl dehydrogenase OS=Mycobacterium bovis GN=lpd PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.605e-26
Identity = 68/175 (38.86%), Postives = 95/175 (54.29%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSV 735
            AAI+AAQLGL T  +E +   GG CLNVGCIPSKALL ++ + H       + G+    V  D      +  K       G+  L KKNK+T + GYG F   + + VD  +GG   V   N IIATGS  + +PG ++    +V+    +   E+PK +++ GAG IG+E G V
Sbjct:   18 AAIRAAQLGLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGIS-GEVTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSL-SANVVTYEEQILSRELPKSIIIAGAGAIGMEFGYV 189          
The following BLAST results are available for this feature:
BLAST of FC931441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
DLDH1_PSEPU8.393e-2840.57Dihydrolipoyl dehydrogenase OS=Pseudomonas putida ... [more]
DLDH_BUCAI1.870e-2739.55Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola... [more]
DLDH3_BACSU3.189e-2737.99Dihydrolipoyl dehydrogenase OS=Bacillus subtilis G... [more]
DLDH_THESC9.279e-2742.37Dihydrolipoyl dehydrogenase OS=Thermus scotoductus... [more]
DLDH_BUCAP9.279e-2738.42Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola... [more]
DLDH_BUCBP1.212e-2636.72Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola... [more]
DLDH_HALVO2.700e-2641.90Dihydrolipoyl dehydrogenase OS=Halobacterium volca... [more]
DLDH_CHLTE2.700e-2638.98Dihydrolipoyl dehydrogenase OS=Chlorobium tepidum ... [more]
DLDH_MYCTU4.605e-2638.86Dihydrolipoyl dehydrogenase OS=Mycobacterium tuber... [more]
DLDH_MYCBO4.605e-2638.86Dihydrolipoyl dehydrogenase OS=Mycobacterium bovis... [more]

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Properties
Property NameValue
Genbank descriptionC34105B06EF PostHarvP1 Citrus clementina cDNA clone C34105B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931441 ID=FC931441; Name=FC931441; organism=Citrus clementina; type=EST; length=741bp
GAATTCAATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGGTGATGGC
AAGTCTTGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACT
CGTCGAATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTC
GCTTCGGCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGG
TGGTTACGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGT
GCATCGAGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGC
ATCCCCTCTAAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCAT
GCATTCTTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATT
TGCCTGCTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGA
GGTATTGAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATA
TGGCGAGTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTG
GAAACACTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGAC
GTTAAGTCTCTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATC
CACTGGAGCTTTAGCATTGAATGAAGTTCCTAAGAAACTCGTGGTCATTG
GGGCAGGCTACATTGGGCTGGAGATGGGCTCAGTTTGGGCC
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