FC931441

Overview
NameFC931441
Unique NameFC931441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13004 contig Ccv1_Contig13004:43..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_CHLP8 (Dihydrolipoyl dehydrogenase OS=Chlorobaculum parvum (strain NCIB 8327) GN=lpd PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.026e-25
Identity = 64/177 (36.16%), Postives = 103/177 (58.19%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AA+ AA+ G+K  C+ ++ +LGG C+N GCIP+KALL S+ +Y  A +  +  GV  S +  DL   + +  K     ++G+E + KK KV   +G         V V   +G    ++  NII+ATG+  + +PG+  D K+I++S  AL L +VP+ ++V+G G IG+EM   +A
Sbjct:   25 AALHAARHGMKV-CLVEKASLGGVCVNWGCIPTKALLRSAEVYDLAKNP-SEFGVNVSELSFDLAQAVKRSRKVSLKSSKGVEFMLKKAKVEVWRGEAVLTGSKGVKVTAEDGSERSLEAANIIVATGAQPRVIPGLEPDGKKIITSREALILKDVPESMIVVGGGAIGVEMAWFYA 199          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_MYCLE (Dihydrolipoyl dehydrogenase OS=Mycobacterium leprae GN=lpd PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.527e-24
Identity = 67/178 (37.64%), Postives = 95/178 (53.37%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTV---VKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSV 735
            AAI+AAQLGL T  +E +   GG CLNVGCIPSK LLH++ + H       + G+       D      +  K       G+  L KKNK+T + GYG F   + +SV+  EG       V   N+IIATGS  + +PG T+    +++    +   E+P  +V++GAG IG+E G V
Sbjct:   18 AAIRAAQLGLSTAVVEPK-YWGGICLNVGCIPSKVLLHNAELAHIFTKEAKTFGIS-GDASFDYGIAYDRSRKVSEGRVAGVHFLMKKNKITEIHGYGRFTDANTLSVELSEGVPETPLKVTFNNVIIATGSKTRLVPG-TLLSTNVITYEEQILTRELPDSIVIVGAGAIGIEFGYV 192          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: IRC15_YEAST (Increased recombination centers protein 15 OS=Saccharomyces cerevisiae GN=IRC15 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.766e-23
Identity = 59/178 (33.15%), Postives = 94/178 (52.81%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYH--EAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA++A+Q GL T C+++R +LGG  L  G +PSK LL+ S++Y   +        G +    + D+ A  +     +  L    +    KN VT  KG   F  P  V +        +V+ K I++ATGS V   PG+ ID  +I+SS  AL+L+ +P +  ++G G IGLE+  ++
Sbjct:   32 AAMQASQAGLLTACVDQRASLGGAYLVDGAVPSKTLLYESYLYRLLQQQELIEQRGTRLFPAKFDMQAAQSALKHNIEELGNVYKRELSKNNVTVYKGTAAFKDPHHVEIAQRGMKPFIVEAKYIVVATGSAVIQCPGVAIDNDKIISSDKALSLDYIPSRFTIMGGGTIGLEIACIF 209          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_ACHLA (Dihydrolipoyl dehydrogenase (Fragment) OS=Acholeplasma laidlawii GN=pdhD PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.062e-22
Identity = 70/181 (38.67%), Postives = 101/181 (55.80%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSD--VKSLPGI--TIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AAIKAAQ G K   +EK   +GG CLN GCIP+K  L S+ +++    S    GV  S  V  D   ++++KD  V  LT G+  L KKN V    G+G+  S +EV V+        +K KN+IIATGS   V  +PG+    ++  +V+S   L +   PK +V++G G IG+E  +V+
Sbjct:   19 AAIKAAQYGAKVALVEKE-VVGGICLNHGCIPTKTFLKSAKVFNTVKKSM-DFGVSTSGEVGFDWSKIVSRKDGVVKQLTNGVAFLLKKNGVDVYNGFGDIKSANEVVVN-----GESLKTKNVIIATGSSAVVPPIPGVKEAYEKGIVVTSRELLNVKNYPKSIVIVGGGVIGVEFATVF 192          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: DLDH_SYNY3 (Dihydrolipoyl dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=lpdA PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 1.533e-21
Identity = 65/180 (36.11%), Postives = 97/180 (53.89%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS--FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNT--VVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA+ A + GLKT  IE +  +GGTC+N GCIPSKALL +S    E          G++ + V     A+ A  +  VS +   +     + KV  ++G+G+   P EV   T+ G N   ++K K I++  GS     PGI ID K + +S  A+ L  +P+ + +IG+GYIGLE   V+
Sbjct:   21 AALHAVKCGLKTAIIEAKD-MGGTCVNRGCIPSKALLAASGRVREMSDQDHLQQLGIQINGVTFTREAIAAHANDLVSKIQSDLTNSLTRLKVDTIRGWGKVSGPQEV---TVIGDNETRILKAKEIMLCPGSVPFVPPGIEIDHKTVFTSDEAVKLETLPQWIAIIGSGYIGLEFSDVY 196          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_MYCTU (Probable soluble pyridine nucleotide transhydrogenase OS=Mycobacterium tuberculosis GN=sthA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.460e-21
Identity = 61/179 (34.08%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA-MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSV-DTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AAI +A+LG     +E+   LGG C+N G IPSK L   + +Y   M+    +G  +   +   PA ++A+    +      +     +N+V  + G+G FI P  + V D      T V G  IIIATG+      G+  DE+R++ S G L L  +P  +VV+GAG IG+E  S++A
Sbjct:   18 AAIASAKLGKSVAIVERGRMLGGVCVNTGTIPSKTL-REAVLYLTGMNQRELYGASYRVKDRITPADLLARTQHVIGKEVDVVRNQLMRNRVDLIVGHGRFIDPHTILVEDQARREKTTVTGDYIIIATGTRPARPSGVEFDEERVLDSDGILDLKSLPSSMVVVGAGVIGIEYASMFA 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_MYCTA (Soluble pyridine nucleotide transhydrogenase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=sthA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.460e-21
Identity = 61/179 (34.08%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA-MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSV-DTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AAI +A+LG     +E+   LGG C+N G IPSK L   + +Y   M+    +G  +   +   PA ++A+    +      +     +N+V  + G+G FI P  + V D      T V G  IIIATG+      G+  DE+R++ S G L L  +P  +VV+GAG IG+E  S++A
Sbjct:   18 AAIASAKLGKSVAIVERGRMLGGVCVNTGTIPSKTL-REAVLYLTGMNQRELYGASYRVKDRITPADLLARTQHVIGKEVDVVRNQLMRNRVDLIVGHGRFIDPHTILVEDQARREKTTVTGDYIIIATGTRPARPSGVEFDEERVLDSDGILDLKSLPSSMVVVGAGVIGIEYASMFA 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_MYCBT (Soluble pyridine nucleotide transhydrogenase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=sthA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.460e-21
Identity = 61/179 (34.08%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA-MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSV-DTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AAI +A+LG     +E+   LGG C+N G IPSK L   + +Y   M+    +G  +   +   PA ++A+    +      +     +N+V  + G+G FI P  + V D      T V G  IIIATG+      G+  DE+R++ S G L L  +P  +VV+GAG IG+E  S++A
Sbjct:   18 AAIASAKLGKSVAIVERGRMLGGVCVNTGTIPSKTL-REAVLYLTGMNQRELYGASYRVKDRITPADLLARTQHVIGKEVDVVRNQLMRNRVDLIVGHGRFIDPHTILVEDQARREKTTVTGDYIIIATGTRPARPSGVEFDEERVLDSDGILDLKSLPSSMVVVGAGVIGIEYASMFA 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_MYCBP (Soluble pyridine nucleotide transhydrogenase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=sthA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.460e-21
Identity = 61/179 (34.08%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA-MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSV-DTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AAI +A+LG     +E+   LGG C+N G IPSK L   + +Y   M+    +G  +   +   PA ++A+    +      +     +N+V  + G+G FI P  + V D      T V G  IIIATG+      G+  DE+R++ S G L L  +P  +VV+GAG IG+E  S++A
Sbjct:   18 AAIASAKLGKSVAIVERGRMLGGVCVNTGTIPSKTL-REAVLYLTGMNQRELYGASYRVKDRITPADLLARTQHVIGKEVDVVRNQLMRNRVDLIVGHGRFIDPHTILVEDQARREKTTVTGDYIIIATGTRPARPSGVEFDEERVLDSDGILDLKSLPSSMVVVGAGVIGIEYASMFA 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_MYCBO (Probable soluble pyridine nucleotide transhydrogenase OS=Mycobacterium bovis GN=sthA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.460e-21
Identity = 61/179 (34.08%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA-MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSV-DTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AAI +A+LG     +E+   LGG C+N G IPSK L   + +Y   M+    +G  +   +   PA ++A+    +      +     +N+V  + G+G FI P  + V D      T V G  IIIATG+      G+  DE+R++ S G L L  +P  +VV+GAG IG+E  S++A
Sbjct:   18 AAIASAKLGKSVAIVERGRMLGGVCVNTGTIPSKTL-REAVLYLTGMNQRELYGASYRVKDRITPADLLARTQHVIGKEVDVVRNQLMRNRVDLIVGHGRFIDPHTILVEDQARREKTTVTGDYIIIATGTRPARPSGVEFDEERVLDSDGILDLKSLPSSMVVVGAGVIGIEYASMFA 195          
The following BLAST results are available for this feature:
BLAST of FC931441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
DLDH_CHLP81.026e-2536.16Dihydrolipoyl dehydrogenase OS=Chlorobaculum parvu... [more]
DLDH_MYCLE2.527e-2437.64Dihydrolipoyl dehydrogenase OS=Mycobacterium lepra... [more]
IRC15_YEAST4.766e-2333.15Increased recombination centers protein 15 OS=Sacc... [more]
DLDH_ACHLA1.062e-2238.67Dihydrolipoyl dehydrogenase (Fragment) OS=Acholepl... [more]
DLDH_SYNY31.533e-2136.11Dihydrolipoyl dehydrogenase OS=Synechocystis sp. (... [more]
STHA_MYCTU4.460e-2134.08Probable soluble pyridine nucleotide transhydrogen... [more]
STHA_MYCTA4.460e-2134.08Soluble pyridine nucleotide transhydrogenase OS=My... [more]
STHA_MYCBT4.460e-2134.08Soluble pyridine nucleotide transhydrogenase OS=My... [more]
STHA_MYCBP4.460e-2134.08Soluble pyridine nucleotide transhydrogenase OS=My... [more]
STHA_MYCBO4.460e-2134.08Probable soluble pyridine nucleotide transhydrogen... [more]

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Properties
Property NameValue
Genbank descriptionC34105B06EF PostHarvP1 Citrus clementina cDNA clone C34105B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931441 ID=FC931441; Name=FC931441; organism=Citrus clementina; type=EST; length=741bp
GAATTCAATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGGTGATGGC
AAGTCTTGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACT
CGTCGAATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTC
GCTTCGGCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGG
TGGTTACGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGT
GCATCGAGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGC
ATCCCCTCTAAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCAT
GCATTCTTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATT
TGCCTGCTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGA
GGTATTGAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATA
TGGCGAGTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTG
GAAACACTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGAC
GTTAAGTCTCTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATC
CACTGGAGCTTTAGCATTGAATGAAGTTCCTAAGAAACTCGTGGTCATTG
GGGCAGGCTACATTGGGCTGGAGATGGGCTCAGTTTGGGCC
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