FC931535

Overview
NameFC931535
Unique NameFC931535
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.513e-67
Identity = 126/189 (66.67%), Postives = 160/189 (84.66%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSN-IRSTIDRYKKACSDNSNSGTVTEINA-QYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMERFQQANMVTGQE 661
            MGRGKIEIKRIEN T+RQVTFCKRRNGLLKKAYEL++LCDAE+ALIVFSSRGRLYE+SN N  RSTI+RYKKA +  S S  V ++N+ QY+QQE+AK+R QIQ LQN+NRHL+G+S+ ++T KELK LENRLE+GI+RIRSKKHE+L +EIE++QKRE +L+NE++ LR K+AE ER +  +    ++
Sbjct:    1 MGRGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKKASASTSGSAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKREADLQNENMFLRAKVAEAERAEHDDQQAAED 189          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 3.513e-67
Identity = 134/187 (71.66%), Postives = 166/187 (88.77%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSN-IRSTIDRYKKACSDNSNSGT-VTEINAQ-YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMERFQQANMVT 652
            MGRG+IEIKRIENTT+RQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN+N +++TIDRYKKA +  S SG  + E+NAQ YYQQESAKLR QIQMLQN+N+HL+GD++S+L++KELKQLE+RLE+GI++IR++K+E+L +EI ++ KREIEL+N+++ LR KIAE E  QQ   VT
Sbjct:    1 MGRGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSGAPLIEVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASEINYMAKREIELQNDNMDLRTKIAEEE--QQLQQVT 185          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.588e-67
Identity = 125/182 (68.68%), Postives = 161/182 (88.46%), Query Frame = 2
Query:  107 RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMER-FQQANMV 649
            RGKIEIKRIENTTNRQVTFCKRR+GLLKKAYELSVLCDAEVAL+VFSSRGRLYEYSN++++ TI+RYKKA SD SN+ TV EINAQ+YQQE+AKL+QQI  LQNSNR L+GD+++++  +ELKQLE RL++G+ +IR++K+E+L AEIE++Q+RE EL+N+++ L+ K+AE ER  Q  NM+
Sbjct:   45 RGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSNNSVKETIERYKKANSDTSNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKSKVAESERGLQTVNMM 226          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.138e-41
Identity = 87/191 (45.55%), Postives = 130/191 (68.06%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKI------AEMERFQQANMVTG 655
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ ++ I  T++RY+  C +  +S         +Y  E +KL+ + + LQ + RHL+G+ L  L+VKEL+QLE +LE  +++ R +K ++++ ++E L+++E +L   +  L+ K+      +     QQA+   G
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQHCCYNAQDSNNALSETQSWY-HEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVEGSTSNYRAMQQASWAQG 190          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.486e-41
Identity = 89/170 (52.35%), Postives = 123/170 (72.35%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIK 610
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ +  I STI+RY + C + S S    E   Q + QE  KL+ + + L  +NR+L+G+ L  + VKEL+ LE +LE  +T  R +K ++++ E+E L+K+E +L + +  L+IK
Sbjct:    1 MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGIESTIERYNR-CYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGVKELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQLGDINKQLKIK 169          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.311e-41
Identity = 82/173 (47.40%), Postives = 127/173 (73.41%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKAC--SDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKI 613
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ ++ I  T+++Y   C  +  SNS      +  +Y QE ++L+ +++ LQ S RH++G+ L  L++KEL+QLE +LE  +++ R +K ++++ +++ L+++E +L   +  L+ K+
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWY-QEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKL 172          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 9.633e-41
Identity = 91/189 (48.15%), Postives = 128/189 (67.72%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKRE--IELENESVCLRIKIAEMERFQQANMVTGQE 661
            MGRGKI I+RI+N+T+RQVTF KRRNGLLKKA ELS+LCDAEV L+VFSS GRLYE+S++N+++ IDRY  A  +       +EI  + +Q+E+A LRQQ+  LQ S++ LMG+ LS L V++L+ LENRLE  +  IR +K  +L +EIE L  +   I  EN  +   + +   ++ +  N +   E
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSSTNMKTVIDRYTNAKEELLGGNATSEI--KIWQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKDNLLKSEIEELHVKGSLIHQENIELSRSLNVMSQQKLELYNKLQACE 187          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.258e-40
Identity = 87/174 (50.00%), Postives = 130/174 (74.71%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSN-IRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAE 619
            MGRGK+E+KRIEN  +RQVTF KRRNGLLKKAYELS+LCDAEVALI+FS RGRL+E+S+S+ +  T++RY ++C+ NS      E    Y  QE  KL+ +++ LQ + R+++G+ L  L++KEL+QLEN++E  + +IRS+K++ LL ++  L+ +E +L++ +  LR K+ E
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERY-RSCNYNSQDAAAPENEINY--QEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQE 171          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.258e-40
Identity = 87/174 (50.00%), Postives = 130/174 (74.71%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSN-IRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAE 619
            MGRGK+E+KRIEN  +RQVTF KRRNGLLKKAYELS+LCDAEVALI+FS RGRL+E+S+S+ +  T++RY ++C+ NS      E    Y  QE  KL+ +++ LQ + R+++G+ L  L++KEL+QLEN++E  + +IRS+K++ LL ++  L+ +E +L++ +  LR K+ E
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERY-RSCNYNSQDAAAPENEINY--QEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQE 171          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.643e-40
Identity = 86/172 (50.00%), Postives = 124/172 (72.09%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIA 616
            MGRGKI I+RI+N+T+RQVTF KRRNG+ KKA EL++LCDAEV L++FSS GRLYEYS+++++S IDRY K+  D   +        +++Q+E+A LRQQ+  LQ ++R LMG+ LS L VKEL+ LEN+LE  +  +R+KK  +L+ EI  L ++   +  E++ L  KI+
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSSTSMKSVIDRYGKS-KDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKKIS 171          
The following BLAST results are available for this feature:
BLAST of FC931535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
MAD21_ORYSJ3.513e-6766.67MADS-box transcription factor 21 OS=Oryza sativa s... [more]
MAD13_ORYSJ3.513e-6771.66MADS-box transcription factor 13 OS=Oryza sativa s... [more]
MAD58_ORYSJ4.588e-6768.68MADS-box transcription factor 58 OS=Oryza sativa s... [more]
MADS6_ORYSJ1.138e-4145.55MADS-box transcription factor 6 OS=Oryza sativa su... [more]
AGL6_ARATH1.486e-4152.35Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
MAD17_ORYSJ3.311e-4147.40MADS-box transcription factor 17 OS=Oryza sativa s... [more]
MAD57_ORYSJ9.633e-4148.15MADS-box transcription factor 57 OS=Oryza sativa s... [more]
MADS1_ORYSJ1.258e-4050.00MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI1.258e-4050.00MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MAD27_ORYSJ1.643e-4050.00MADS-box transcription factor 27 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC34106B08EF PostHarvP1 Citrus clementina cDNA clone C34106B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931535 ID=FC931535; Name=FC931535; organism=Citrus clementina; type=EST; length=680bp
GCTATAAAACACAATTGATTTTGGTTTTCTATTTTTCTTCGGGATTCTAA
ATTTTCCGAAAGCTGAATTGGCCGGACTGTGGCCAAAAAACTCAGGTCCA
ATGGGGAGAGGAAAGATTGAGATCAAAAGGATCGAAAACACAACGAATCG
TCAAGTGACCTTCTGCAAGAGGAGAAATGGACTCTTGAAGAAAGCTTATG
AACTTTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGC
CGCGGCCGCCTCTACGAGTACTCCAACAGCAACATAAGGTCAACAATTGA
TAGGTACAAGAAGGCATGTTCAGATAATTCAAATTCCGGCACTGTTACTG
AGATCAATGCTCAGTACTATCAGCAGGAGTCAGCAAAGCTGCGGCAGCAA
ATTCAAATGTTACAGAATTCTAACAGGCATTTGATGGGTGATTCTCTGAG
TTCTTTAACTGTAAAAGAGCTTAAGCAACTGGAGAACAGGCTTGAGCGAG
GCATCACTAGGATCAGGTCCAAGAAGCATGAAATGCTGCTAGCTGAAATT
GAGTTCTTGCAGAAAAGGGAGATTGAGCTGGAAAATGAAAGTGTGTGTCT
CCGAATCAAGATAGCAGAAATGGAGAGGTTTCAGCAAGCAAACATGGTGA
CTGGGCAAGAGCTGAATGCAATCCACGCAT
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