FC931535

Overview
NameFC931535
Unique NameFC931535
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.439e-36
Identity = 84/178 (47.19%), Postives = 124/178 (69.66%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SNSNIRSTIDRYKK----ACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAE 619
            MGRG++E+KRIE   NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ S+S++  T++RY+K    A   N ++    EI++   QQE  KL+ + + LQ S R+L+G+ L  L  KEL+ LE +L+  + +IRS + +++L ++   Q++E  L   +  L+ ++ E
Sbjct:    1 MGRGRVELKRIEGKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNISTREALEISS---QQEYLKLKGRYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHALNEANRTLKQRLME 175          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.439e-36
Identity = 80/177 (45.20%), Postives = 124/177 (70.06%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYS-NSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMER 628
            MGRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEVALIVFSS+G+L+EYS +S +   ++RY +    +          ++ +  E AKL+ ++++L+ + R+ MG+ L SL++KEL+ LE++L+  I  IRS+K++ +   I  LQK++  L++ +  L  KI E E+
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNSLLKKIKEREK 177          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.188e-36
Identity = 78/177 (44.07%), Postives = 123/177 (69.49%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYS-NSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMER 628
            MGRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEVAL++FSS+G+L+EYS +S +   ++RY +    +          ++ +  E AKL+ ++++L+ + R+ MG+ L SL++KEL+ LE++L   I  IRS+K++ +   I  LQK++  L++ +  L  KI E E+
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRYLYSDKQLVGRDISQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESISALQKKDKVLQDHNNALLKKIKEREK 177          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.188e-36
Identity = 77/160 (48.12%), Postives = 116/160 (72.50%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIEL 580
            MGRGK+E+KRIEN   RQVTF KR++GLLKKAYELSVLCDAEV+LI+FS+ G+LYE+SN  +  TI+RY + C DN       E + Q  +QE  KL+ + + L  ++R+L+G+ L  +++KEL+ LE +LE  ++  R +K ++++ ++E L+++E EL
Sbjct:    1 MGRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNVGVGRTIERYYR-CKDNLLDNDTLE-DTQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIKELQTLERQLEGALSATRKQKTQVMMEQMEELRRKEREL 158          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.470e-36
Identity = 78/194 (40.21%), Postives = 130/194 (67.01%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN-SNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMERFQQANMVTGQELNAIHA 679
            MGRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEV LIVFS++G+L+EY+N S +   ++RY++              +   +  E  KL+ ++++LQ + +H +G+ L SL++KEL+ LE++L+  +  IRS+K++++   I  LQK++  L+ ++  L  K+ E E+   A  ++G   +++ A
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERILERYERYSFAEKQLVPTDHTSPVSWTLEHRKLKARLEVLQRNQKHYVGEDLESLSMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKKDRALQEQNNQLSKKVKEREK--SAQQISGINSSSLFA 192          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.144e-36
Identity = 76/177 (42.94%), Postives = 122/177 (68.93%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN-SNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMER 628
            MGRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEV LIVFS++G+L+EY+N S +   ++RY++              +   +  E AKL+ ++++LQ + +H +G+ L SL +KEL+ LE++L+  +  IRS+K++++   I  LQK++  L+ ++  L  K+ E E+
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERLLERYERYSFAERQLVPTDHTSPGSWTLEHAKLKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKEREK 177          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.546e-35
Identity = 76/194 (39.18%), Postives = 130/194 (67.01%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYS-NSNIRSTIDRYKK-ACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMERFQQANMVTGQELNAIH 676
            MGRG++++KRIEN  NRQVTF KRR GLLKKA+E+SVLCDAEVAL+VFS +G+L+EYS +S +   ++RY++ + ++       +++N   +  E  +L+ +I++L+ + RH +G+ L +++ KEL+ LE +L+  +  IR++K++++   I  LQK+E  ++ ++  L  +I E E+  +A      + N  H
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTN-WSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYESINELQKKEKAIQEQNSMLSKQIKEREKILRAQQEQWDQQNQGH 193          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.631e-35
Identity = 76/170 (44.71%), Postives = 121/170 (71.18%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIK 610
            M RGK ++KRIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEVALIVFS RG+LYE+++++ + TI+RY+    +N  + TV + + +  + ++  L ++++ L+   R L+G+ L   +++EL  LE +LER +  IR +K ++L  ++  L+++E++L  ++  LR K
Sbjct:    1 MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQKTIERYRTYTKENIGNKTVQQ-DIEQVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREK 169          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.032e-34
Identity = 76/194 (39.18%), Postives = 130/194 (67.01%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYS-NSNIRSTIDRYKK-ACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMERFQQANMVTGQELNAIH 676
            MGRG++++KRIEN  NRQVTF KRR GLLKKA+E+SVLCDAEVAL+VFS +G+L+EYS +S +   ++RY++ + ++       +++N   +  E  +L+ +I++L+ + RH +G+ L +++ KEL+ LE +L+  +  IRS+K++++   I  LQ++E  ++ ++  L  +I E E+  +A      + N  H
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTN-WSMEYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMHDSINELQRKEKAIQEQNSMLSKQIKEREKILRAQQEQWDQQNHGH 193          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.120e-34
Identity = 74/177 (41.81%), Postives = 121/177 (68.36%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMER 628
            MGRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEV LIVFS++G+L+EY ++S +   ++RY++              +   +  E+AKL+ ++++LQ + +  +G+ L SL +KEL+ LE++L   +  IRS+K++++   I  LQK++  L+ ++  L  K+ E E+
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATDSCMERLLERYERYSFAEKQLVPTDHTSPGSWTLENAKLKARLEVLQRNEKLYVGEDLESLNMKELQNLEHQLASALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKEREK 177          
The following BLAST results are available for this feature:
BLAST of FC931535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
AGL9_SOLLC1.439e-3647.19Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
AGL8_ARATH1.439e-3645.20Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
AGL8_SINAL4.188e-3644.07Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
AGL13_ARATH4.188e-3648.13Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]
AGL8_SOLLC5.470e-3640.21Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_SOLTU7.144e-3642.94Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AP1_ARATH3.546e-3539.18Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
MAD50_ORYSJ4.631e-3544.71MADS-box transcription factor 50 OS=Oryza sativa s... [more]
AP1_SINAL1.032e-3439.18Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
AGL8_SOLCO5.120e-3441.81Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]

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Properties
Property NameValue
Genbank descriptionC34106B08EF PostHarvP1 Citrus clementina cDNA clone C34106B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931535 ID=FC931535; Name=FC931535; organism=Citrus clementina; type=EST; length=680bp
GCTATAAAACACAATTGATTTTGGTTTTCTATTTTTCTTCGGGATTCTAA
ATTTTCCGAAAGCTGAATTGGCCGGACTGTGGCCAAAAAACTCAGGTCCA
ATGGGGAGAGGAAAGATTGAGATCAAAAGGATCGAAAACACAACGAATCG
TCAAGTGACCTTCTGCAAGAGGAGAAATGGACTCTTGAAGAAAGCTTATG
AACTTTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGC
CGCGGCCGCCTCTACGAGTACTCCAACAGCAACATAAGGTCAACAATTGA
TAGGTACAAGAAGGCATGTTCAGATAATTCAAATTCCGGCACTGTTACTG
AGATCAATGCTCAGTACTATCAGCAGGAGTCAGCAAAGCTGCGGCAGCAA
ATTCAAATGTTACAGAATTCTAACAGGCATTTGATGGGTGATTCTCTGAG
TTCTTTAACTGTAAAAGAGCTTAAGCAACTGGAGAACAGGCTTGAGCGAG
GCATCACTAGGATCAGGTCCAAGAAGCATGAAATGCTGCTAGCTGAAATT
GAGTTCTTGCAGAAAAGGGAGATTGAGCTGGAAAATGAAAGTGTGTGTCT
CCGAATCAAGATAGCAGAAATGGAGAGGTTTCAGCAAGCAAACATGGTGA
CTGGGCAAGAGCTGAATGCAATCCACGCAT
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