FC931535

Overview
NameFC931535
Unique NameFC931535
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.733e-34
Identity = 84/183 (45.90%), Postives = 120/183 (65.57%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAK----LRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIE--FLQKREIELENESVCLRIKIAEMERF 631
            MGRGKIEIKRIEN  +RQVTF KRR GLLKKA+ELSVLCDAEVA+IVFS  G+L+E+S+++++ T+ RY     +   S  V  IN +   QE       L+ +I MLQ  + H+ G  L+ L++KEL+ LE +L   +  +R +K  +L  ++E   L+++  ELENE+  LR ++ E+  F
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSSTSMKKTLLRY----GNYQISSDVPGINCKTENQEECTEVDLLKDEISMLQEKHLHMQGKPLNLLSLKELQHLEKQLNFSLISVRERKELLLTKQLEESRLKEQRAELENET--LRRQVQELRSF 177          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.541e-33
Identity = 76/179 (42.46%), Postives = 122/179 (68.16%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN--SNIRSTIDRYKKACSDNSNSGTVTEIN-AQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMER 628
            MGRGKIEIKRIEN+TNRQVTF KRR GLLKKA EL+VLCDA V +++FSS G+++EY +   ++R  I++Y+ A + +       EIN  Q    E  +++ +++ L+   R   GD LSSLT+ ++  LE +LE  ++++R++KH++L  +++ L+++E  LE+++  L   I E ++
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLRELIEQYQHATNSH-----FEEINHDQQILLEMTRMKNEMEKLETGIRRYTGDDLSSLTLDDVSDLEQQLEYSVSKVRARKHQLLNQQLDNLRRKEQILEDQNTFLYRMINENQQ 174          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.334e-33
Identity = 75/183 (40.98%), Postives = 127/183 (69.40%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKA-CSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMERFQQANM 646
            MGRGKI I++I+++T+RQVTF KRR GL+KKA EL++LCDAEV LI+FS+  +LY++++S+++STI+R+  A   +       +E+  +++Q+E+  LRQ++  LQ + R L G  L+ L+VKEL+ +E++LE  +  IR K+ ++L  EI+ L ++   + +E++ L  K+   +R  Q N+
Sbjct:    1 MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASSSVKSTIERFNTAKMEEQELMNPASEV--KFWQREAETLRQELHSLQENYRQLTGVELNGLSVKELQNIESQLEMSLRGIRMKREQILTNEIKELTRKRNLVHHENLELSRKV---QRIHQENV 178          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.660e-33
Identity = 82/179 (45.81%), Postives = 114/179 (63.69%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIE--FLQKREIELENESVCLRIKIAEMERF 631
            MGRGKIEIKRIEN  +RQVTF KRR+GLLKKA ELSVLCDAEVA+IVFS  G+L+EYS++ ++ T+ RY        N  + +   A+    E   L+ Q+  LQ  +  L G  L+ LT KEL+ LE +L   +  +R +K  +L  ++E   L+++  ELENE+  LR ++ E+  F
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSSTGMKQTLSRY-------GNHQSSSASKAEEDCAEVDILKDQLSKLQEKHLQLQGKGLNPLTFKELQSLEQQLYHALITVRERKERLLTNQLEESRLKEQRAELENET--LRRQVQELRSF 170          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 7.393e-33
Identity = 73/173 (42.20%), Postives = 114/173 (65.90%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSN-----IRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLR 604
            MGRGK++++RIEN  +RQVTF KRR GLLKKA+E++VLCD +VA IVFS++G L+ Y++S+     I    DR++     N+      E+       +  KLR +I+ L+ S R+LMG  L SLT+++++QLEN+++  +  IRS+K ++L+ +   L+K+  ELE    C+R
Sbjct:    1 MGRGKVQVRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASSHTTMERILEKYDRHELLSEGNNVIEEFPELEGS-MSYDHIKLRGRIEALKKSQRNLMGQELDSLTLQDIQQLENQIDTSLNNIRSRKEKLLMEKNTILEKKITELETLHTCIR 172          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.809e-32
Identity = 73/167 (43.71%), Postives = 113/167 (67.66%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN--SNIRSTIDRYKKACSDNSNSGTVTEIN-AQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENES 592
            MGRGKIEIKRIEN TNRQVTF KRR GLLKKA EL+VLCDA V +++FSS G+++EY +   ++R  I+ Y+   + +       EIN  Q    E  ++R +++ L    R   GD LS+LT+ ++  LE +LE  +T++R++KH++L  +++ L+++E  LE+++
Sbjct:    1 MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQTVTNTH-----FEEINHDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLSNLTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNLRRKEHILEDQN 162          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.106e-31
Identity = 76/166 (45.78%), Postives = 107/166 (64.46%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNS--NIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENES 592
            MGRGKIE+KRIEN T+RQVTF KRR GLLKK +ELSVLCDA++ LI+FSS+G+L+EY +   ++   I RY +     + +    E N      E AK+R+    LQ S +   GD LS    +EL +LE +LE  + +IR++K E++  ++E L+K E  LE E+
Sbjct:    4 MGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRYLQ----TTGASLPVEDNRVQLYDEVAKMRRDTLNLQLSLQRYKGDDLSLAQYEELNELEKQLEHALNKIRARKLELMQQQMENLKKTEKMLEKEN 165          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.919e-31
Identity = 71/175 (40.57%), Postives = 115/175 (65.71%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEME 625
            MGRGKIEIKRIEN++NRQVT+ KRRNG+LKKA E+SVLCDA V++I+F+S G+++E+S++++   +D+Y K          + +   +    E  K+++    +Q   RHL G+ ++SL  +EL  LE+ LE G+T IR+K++E+L      ++K+   +E E   L  ++ ++E
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVDILDQYHKL-----TGRRLLDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMILEDALENGLTSIRNKQNEVL----RMMRKKTQSMEEEQDQLNCQLRQLE 166          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.542e-30
Identity = 76/181 (41.99%), Postives = 117/181 (64.64%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACS----DNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLR-IKIAEMER 628
            MGRGKIEIKRIEN++NRQVT+ KRRNG+LKKA E+SVLCDA V++I+F+S G+++E+S++++   +D+Y K       D  +     EIN         K+++    +Q   RHL G+ ++SL  +EL  LE+ L+ G+T IR+K++++L    +  Q  E E +  +  LR ++IA M R
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVDILDQYHKLTGRRLWDAKHENLDNEIN---------KVKKDNDNMQIELRHLKGEDITSLNHRELMMLEDALDNGLTSIRNKQNDLLRMMRKKTQSMEEEQDQLNWQLRQLEIASMNR 172          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.013e-30
Identity = 73/191 (38.22%), Postives = 120/191 (62.83%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNS-NIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSS-LTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMERFQQANMVTGQELN 667
            M RGK++++RIEN  +RQVTFCKRR GLLKKA ELS+LC+A++ +I+FS+ G+LY+ + +  +   I+RYK A  + +N+     ++    +QE+  L+Q+I +LQ   R++ G+  +  +TV+EL  LE  LE  +  IRS K ++++ EI+ L+ +E  L+  +  L+ KI E        M+   + N
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQANACGDQRMDP---KQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEKIVEQNGLIDVGMMVADQQN 188          
The following BLAST results are available for this feature:
BLAST of FC931535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
AGL15_BRANA8.733e-3445.90Agamous-like MADS-box protein AGL15 OS=Brassica na... [more]
M17_MAIZE2.541e-3342.46MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=... [more]
AGL17_ARATH4.334e-3340.98Agamous-like MADS-box protein AGL17 OS=Arabidopsis... [more]
AGL15_ARATH5.660e-3345.81Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]
MAD20_ORYSJ7.393e-3342.20MADS-box transcription factor 20 OS=Oryza sativa s... [more]
MAD29_ORYSJ2.809e-3243.71MADS-box transcription factor 29 OS=Oryza sativa s... [more]
FBP24_PETHY3.106e-3145.78MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
FBP1_PETHY6.919e-3140.57Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]
GLOB_TOBAC1.542e-3041.99Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
MAD26_ORYSJ2.013e-3038.22MADS-box transcription factor 26 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC34106B08EF PostHarvP1 Citrus clementina cDNA clone C34106B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931535 ID=FC931535; Name=FC931535; organism=Citrus clementina; type=EST; length=680bp
GCTATAAAACACAATTGATTTTGGTTTTCTATTTTTCTTCGGGATTCTAA
ATTTTCCGAAAGCTGAATTGGCCGGACTGTGGCCAAAAAACTCAGGTCCA
ATGGGGAGAGGAAAGATTGAGATCAAAAGGATCGAAAACACAACGAATCG
TCAAGTGACCTTCTGCAAGAGGAGAAATGGACTCTTGAAGAAAGCTTATG
AACTTTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGC
CGCGGCCGCCTCTACGAGTACTCCAACAGCAACATAAGGTCAACAATTGA
TAGGTACAAGAAGGCATGTTCAGATAATTCAAATTCCGGCACTGTTACTG
AGATCAATGCTCAGTACTATCAGCAGGAGTCAGCAAAGCTGCGGCAGCAA
ATTCAAATGTTACAGAATTCTAACAGGCATTTGATGGGTGATTCTCTGAG
TTCTTTAACTGTAAAAGAGCTTAAGCAACTGGAGAACAGGCTTGAGCGAG
GCATCACTAGGATCAGGTCCAAGAAGCATGAAATGCTGCTAGCTGAAATT
GAGTTCTTGCAGAAAAGGGAGATTGAGCTGGAAAATGAAAGTGTGTGTCT
CCGAATCAAGATAGCAGAAATGGAGAGGTTTCAGCAAGCAAACATGGTGA
CTGGGCAAGAGCTGAATGCAATCCACGCAT
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