FC931535

Overview
NameFC931535
Unique NameFC931535
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSI (MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.013e-30
Identity = 73/191 (38.22%), Postives = 120/191 (62.83%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNS-NIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSS-LTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMERFQQANMVTGQELN 667
            M RGK++++RIEN  +RQVTFCKRR GLLKKA ELS+LC+A++ +I+FS+ G+LY+ + +  +   I+RYK A  + +N+     ++    +QE+  L+Q+I +LQ   R++ G+  +  +TV+EL  LE  LE  +  IRS K ++++ EI+ L+ +E  L+  +  L+ KI E        M+   + N
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQANACGDQRMDP---KQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEKIVEQNGLIDVGMMVADQQN 188          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.013e-30
Identity = 76/181 (41.99%), Postives = 110/181 (60.77%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQ-------QESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAE 619
            M RGKI++KRIEN  +RQVTFCKRR GLLKKA ELSVLCDAE+ +++FS +G+L+E  +   +   ID+Y K       S + T    +  Q        E   L+Q+I+MLQ    ++ G    ++ ++EL  LE  LE  I++IRS K +++L EI+ L+ +E  L+N +  L  KI E
Sbjct:    1 MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKYMKCTGGGRGSSSATFTAQEQLQPPNLDPKDEINVLKQEIEMLQKGISYMFGGGDGAMNLEELLLLEKHLEYWISQIRSAKMDVMLQEIQSLRNKEGVLKNTNKYLLEKIEE 181          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.650e-30
Identity = 72/182 (39.56%), Postives = 115/182 (63.19%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQES-AKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMERFQQAN 643
            M R KI+IK+I+N+T RQVTF KRR GL KKA ELSVLCDA+VALI+FSS G+L++YS+S+++  ++R +   S N        +  Q  +  + ++L ++I    +  R + G+ L  L ++EL+QLE  LE G++R+  +K + ++ EI  LQ++ + L  E+  LR ++ E+      N
Sbjct:    1 MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSSMKQILER-RDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEKLRQQVMEISNNNNNN 181          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.650e-30
Identity = 73/169 (43.20%), Postives = 112/169 (66.27%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNS--NIRSTIDRYKKA---CSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENES 592
            MGRGKIE+KRIEN T+RQVTF KRR+GL+KK +ELSVLCDA++ LIVFS++G+L EY     +++  IDRY KA     +  N       N Q   +E  +++++   LQ + +   GD LS++  +EL +LE  L++ + ++R++K E+L  ++E L++ E  LE E+
Sbjct:    1 MGRGKIEVKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTPPFSMKQIIDRYVKAKGILPEMENRAGPHADNDQVI-KELTRMKEETLNLQLNLQRYKGDDLSTVRFEELTELEKLLDQSLNKVRARKLELLHEQMENLKRTEFMLEKEN 168          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.704e-29
Identity = 72/177 (40.68%), Postives = 111/177 (62.71%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMER 628
            M RGK++++RIEN  +RQVTFCKRR GLLKKA ELSVLCDA+V +I+FSS+G+L+E  +N N+ + ++RY+   +         +   Q  +Q    LR++I +LQ   R   G     +T+ +L  LE  LE  I +IR+ K +M+  EI+FL+ +E  L+  +  L+ K+ E ++
Sbjct:    1 MVRGKVQMRRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGNMHNLVERYQSNVAGGQMEPGALQ-RQQVAEQGIFLLREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLELWIYQIRTTKMQMMQQEIQFLRNKEGILKEANEMLQEKVKEQQK 176          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.226e-29
Identity = 74/194 (38.14%), Postives = 121/194 (62.37%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQ-QESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMERFQQANMVTGQELNAIHA 679
            M R KI+I++I+N T RQVTF KRR GL KKA ELSVLCDA+VALI+FSS G+L+E+ +S+++  ++R+    S N        +  Q  +  + A++ ++I    +  R + G+ L  L ++EL+QLE  LE G+TR+   K + +++EI  LQK+ ++L +E+  LR +  ++   ++   +  Q  N +HA
Sbjct:    1 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSSSMKEVLERHNLQ-SKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDIEELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRLRQQGTQLT--EENERLGMQICNNVHA 191          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.214e-28
Identity = 69/174 (39.66%), Postives = 105/174 (60.34%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEM 622
            M R + EIKRIE+   RQVTF KRR GL KKA ELSVLCDA+VALIVFSS G+L  +++S++   ID+Y    S+N        ++      + A L +Q+       R + G+ L  L++ EL+QLE  LE G+ R+   K +  + +I  LQ++  +L  E++ LR +++++
Sbjct:    1 MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASSSMNEIIDKY-NTHSNNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQLRNQVSQI 173          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.352e-28
Identity = 66/148 (44.59%), Postives = 97/148 (65.54%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNS--NIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEML 538
            MGRG++E+K+IEN TNRQVTF KRR GLLKKA EL++LCDA++ +IVFS  G++YEYS+    I +  DRY KA S       V     Q   QE  +++ +   L+   R  MGD L+SLT++++  LE ++E  + ++R +K ++L
Sbjct:    1 MGRGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYLKAPSTRFEEMDV----QQRIIQEMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLEQQIEFSLYKVRLRKQQLL 144          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.221e-27
Identity = 72/178 (40.45%), Postives = 112/178 (62.92%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN--SNIRSTIDRYKKACSDNSNSGTVT-EINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEME 625
            MGRGKIEIKRIEN+TNRQVTF KRR+G+LKKA E+SVLCDAEV +++FSS G+LY+Y +  +++   +++Y+      +NSG +  +   +    E  +++++   +Q   RHL G+ L+SL  KEL  +E  L+ GI  +  K    L+   E   + +  LE+E+  L  K+ + +
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKYQ------TNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGIVNVNDK----LMDHWERHVRTDKMLEDENKLLAFKLHQQD 168          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.083e-27
Identity = 65/176 (36.93%), Postives = 112/176 (63.64%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY--SNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEM 622
            MGRGKIEIKRIEN++NRQVT+ KRRNG++KKA E+SVLCDA V++I+F+S G+++E+   ++ +   +D Y K      +   + +   ++   E  +++++   +Q   RHL G+ +++L  KEL  LE+ LE G + +++K+ E     +  ++K    +E E+  L+ K+ +M
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHKL-----SGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKELMVLEDALENGTSALKNKQMEF----VRMMRKHNEMVEEENQSLQFKLRQM 167          
The following BLAST results are available for this feature:
BLAST of FC931535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
MAD26_ORYSI2.013e-3038.22MADS-box transcription factor 26 OS=Oryza sativa s... [more]
AGL12_ARATH2.013e-3041.99Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]
JOIN_SOLLC7.650e-3039.56MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
DEF21_ANTMA7.650e-3043.20MADS-box protein defh21 OS=Antirrhinum majus GN=DE... [more]
MAD33_ORYSJ1.704e-2940.68MADS-box transcription factor 33 OS=Oryza sativa s... [more]
SVP_ARATH2.226e-2938.14MADS-box protein SVP OS=Arabidopsis thaliana GN=SV... [more]
MAD22_ORYSJ3.214e-2839.66MADS-box transcription factor 22 OS=Oryza sativa s... [more]
MAD31_ORYSJ9.352e-2844.59MADS-box transcription factor 31 OS=Oryza sativa s... [more]
MADS2_ORYSJ1.221e-2740.45MADS-box transcription factor 2 OS=Oryza sativa su... [more]
GLOB_ANTMA2.083e-2736.93Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]

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Properties
Property NameValue
Genbank descriptionC34106B08EF PostHarvP1 Citrus clementina cDNA clone C34106B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931535 ID=FC931535; Name=FC931535; organism=Citrus clementina; type=EST; length=680bp
GCTATAAAACACAATTGATTTTGGTTTTCTATTTTTCTTCGGGATTCTAA
ATTTTCCGAAAGCTGAATTGGCCGGACTGTGGCCAAAAAACTCAGGTCCA
ATGGGGAGAGGAAAGATTGAGATCAAAAGGATCGAAAACACAACGAATCG
TCAAGTGACCTTCTGCAAGAGGAGAAATGGACTCTTGAAGAAAGCTTATG
AACTTTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGC
CGCGGCCGCCTCTACGAGTACTCCAACAGCAACATAAGGTCAACAATTGA
TAGGTACAAGAAGGCATGTTCAGATAATTCAAATTCCGGCACTGTTACTG
AGATCAATGCTCAGTACTATCAGCAGGAGTCAGCAAAGCTGCGGCAGCAA
ATTCAAATGTTACAGAATTCTAACAGGCATTTGATGGGTGATTCTCTGAG
TTCTTTAACTGTAAAAGAGCTTAAGCAACTGGAGAACAGGCTTGAGCGAG
GCATCACTAGGATCAGGTCCAAGAAGCATGAAATGCTGCTAGCTGAAATT
GAGTTCTTGCAGAAAAGGGAGATTGAGCTGGAAAATGAAAGTGTGTGTCT
CCGAATCAAGATAGCAGAAATGGAGAGGTTTCAGCAAGCAAACATGGTGA
CTGGGCAAGAGCTGAATGCAATCCACGCAT
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