FC931541

Overview
NameFC931541
Unique NameFC931541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10943 contig Ccv1_Contig10943:26..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA1_CAEEL (Proteasome subunit alpha type-1 OS=Caenorhabditis elegans GN=pas-6 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.120e-23
Identity = 64/193 (33.16%), Postives = 100/193 (51.81%), Query Frame = 1
Query:   61 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQETIKLAIRALL 639
            +YD  +TV+SP G L QVEYA+EA+++G+A VG++     V+   K++   L   +  +K+  +D H  ++ AGL +D R+L    + EC S R   +  V ++ +   +    Q  TQ  G RPFG+  LI G+D       + QTDPS    +    + G  S S R +LE+N          +L + ALL
Sbjct:    5 QYDGDVTVWSPQGRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDLSSHQ--KKVYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQYYGRRPFGVGILIAGYD--KDGAHIIQTDPSAEVVSMHGTSIGARSQSARTYLERNVDNFEKSTPEQLIVHALL 193          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA3_SCHPO (Probable proteasome subunit alpha type-3 OS=Schizosaccharomyces pombe GN=SPCC1795.04c PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.214e-22
Identity = 62/185 (33.51%), Postives = 93/185 (50.27%), Query Frame = 1
Query:   85 FSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEK-NYKETSGQETIKLAIRAL 636
            FSPDG LFQ EYA +AV   +  +G++  D ++L +EK  T KL   R   +I S+D HI +A  G   D + ++ RAR E  S R     P+    I   +    Q +T    VRPFG+ + +  +D  +  P LY  +P+G +  +   A G+     R  LEK N+     ++ +K A R L
Sbjct:   14 FSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLKPRVNNRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGVMSFVATYD--SEGPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEKLNFSSLKMKDAVKEAARIL 196          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA3_CAEEL (Proteasome subunit alpha type-3 OS=Caenorhabditis elegans GN=pas-7 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.301e-16
Identity = 59/206 (28.64%), Postives = 105/206 (50.97%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEK-NYKETSGQETIKLAIRALLEV-VESGGKNIEV 675
            YD A + FSPDG +FQVEYA +AV      + +RG + +V+  +K  + KL    +  ++ ++++++ +A AG   D   L N A  E         +P+ ++ I   +A     +T  G  RPFG     + ++  TG   L+  +PSG    +KA A G++  + +  +EK   +E    + +K A R ++ V  E+  KN+++
Sbjct:    8 YDLAASTFSPDGRIFQVEYAQKAVDNAGTMIAIRGKNGVVVVADKLISSKLYTDNANPRMFNVNDNVGVAVAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHT-LGISRPFGAGAFFMSWNKQTG-GRLFLVEPSGLNYEYKAWAVGKHRQAAKAEIEKLKIEELDVNQLVKEAARIIMVVRDENKDKNVQI 211          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA4_ENCCU (Probable proteasome subunit alpha type-4 OS=Encephalitozoon cuniculi GN=PRE9 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.942e-16
Identity = 59/173 (34.10%), Postives = 88/173 (50.87%), Query Frame = 1
Query:   85 FSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVL-GVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQS--HRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE 594
            F+ +G L QVE+A++ V +    +G   +D +VL GV K+ T     +  + KI  L + I     GL  DA  L   ARI+ Q    R  VE P+T   + +++   +Q +TQ  G RPFG+S L  G     G  +L  TDPSGT + WK    G N  ++   L+ ++ E
Sbjct:   11 FTDEGRLPQVEFAIKNVSRAGTIIGYVCSDGVVLMGVNKEPT-----NGPMEKIYQLSDSIYCVLCGLFGDAMELKRYARIKAQEVLERFGVECPLTT--LCKFVGQRKQAFTQYAGTRPFGVSFLYAGV--IDGKYALMSTDPSGTSNRWKGMCYGENEEAINRGLKNDFPE 174          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBB (Proteasome subunit alpha type-1 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.101e-15
Identity = 58/203 (28.57%), Postives = 96/203 (47.29%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVR-KGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPY----TGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKET-----SGQETIKLAIRAL 636
            A +D+ ITVFSP+G L+QVEYA +AV   G   V +R  D +++  +     KL    ++  + +++++  +   G   D + L+ +AR E   ++     P+ V  + +    + Q  TQ  G+R  G     VG +        +P +Y  DP+G  +A  A A G+       FLEK  K       S +E   +A+ AL
Sbjct:    4 AGFDKYITVFSPEGSLYQVEYAFKAVTYAGLLTVAIRCKDAVLVFTQHSVPDKLMRPETITSLYNVNDNTGVCITGRAPDGKALVQKARNEASEYKYRYGMPMLVSVLAKPWQDMAQVRTQQAGMRLMGTIMTFVGMEQNDEDGAWIPQIYCVDPAGG-AAVHACAVGKKQIEACAFLEKKQKNAPFHTLSQKEAAMIALAAL 205          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.315e-12
Identity = 55/189 (29.10%), Postives = 94/189 (49.74%), Query Frame = 1
Query:  139 KGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDP-SGTFSAWKANATGRNSNSMREFLEKNYKET-SGQETIKLAIRALLEVVE---SGGKNIEVAVMT 687
            KG   VGV  TD IVL  E+++T+     S++ +K+  +D+ + +  AG   DA+ L+    +E Q +++  ++ +T++ IT     L   +       P  +  LI G D     P +Y  D   G+    + +ATG  S      LE  Y+E  + +E + LAIRA+    +   + G+NI+V V+T
Sbjct:    8 KGTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRDESMTIKGITT----LMSNFLSRNRYYPMMVQLLIGGVD--KNGPGIYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRENMTVKEGLDLAIRAIHNATKRDSASGENIDVVVIT 190          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 56/188 (29.79%), Postives = 84/188 (44.68%), Query Frame = 1
Query:  139 KGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGQETIKLAIRALLEVVES---GGKNIEVAVMT 687
            KG   VG+   D +V   E+++++  L   ++  KI  +D HIA   AG  ADA+ L+   + E   +R+   + +++E      A L      S    PF + TL+ G D       +Y  DPSG     K  +TG  S      LE  Y  E    E + +AIRA+   +E     G  I VA +T
Sbjct:    8 KGTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIE----AAAALAANILHSSRFYPFIVQTLLGGVD--ENGAKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIRAIKSAMERDTYSGNGILVATVT 189          
The following BLAST results are available for this feature:
BLAST of FC931541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSA1_CAEEL7.120e-2333.16Proteasome subunit alpha type-1 OS=Caenorhabditis ... [more]
PSA3_SCHPO1.214e-2233.51Probable proteasome subunit alpha type-3 OS=Schizo... [more]
PSA3_CAEEL1.301e-1628.64Proteasome subunit alpha type-3 OS=Caenorhabditis ... [more]
PSA4_ENCCU4.942e-1634.10Probable proteasome subunit alpha type-4 OS=Enceph... [more]
PSA1_TRYBB1.101e-1528.57Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSMB_METTE3.315e-1229.10Proteasome subunit beta OS=Methanosarcina thermoph... [more]
PSMB_METTH8.165e-1129.79Proteasome subunit beta OS=Methanobacterium thermo... [more]

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Properties
Property NameValue
Genbank descriptionC34106C03EF PostHarvP1 Citrus clementina cDNA clone C34106C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931541 ID=FC931541; Name=FC931541; organism=Citrus clementina; type=EST; length=688bp
GAATCAGAGAGACGCAGAAATCGATCGAGAAGAGGAAAATCAGAGAGATT
TGACATGGCGAGATACGATCGAGCAATCACTGTATTTTCACCGGATGGCC
ACCTGTTCCAAGTGGAATACGCACTAGAGGCCGTACGCAAAGGCAACGCC
GCCGTCGGCGTGCGCGGCACCGACACCATCGTTCTTGGCGTCGAAAAGAA
ATCCACTGTCAAGCTTCAGGATTCTAGATCAGTGAGGAAGATTGTCAGCT
TGGATAATCATATTGCATTGGCCTGTGCTGGACTTAAAGCAGATGCTCGT
GTCCTGATAAACAGGGCTCGAATAGAATGTCAGAGCCACAGGCTGACTGT
TGAGGACCCAGTAACTGTTGAGTACATCACTCGATACATTGCAGGTCTCC
AGCAGAAGTACACACAAAGCGGTGGTGTGAGACCATTTGGTCTTTCTACT
CTGATTGTGGGCTTTGATCCATACACTGGCGTGCCGTCACTATATCAGAC
AGATCCTTCTGGGACATTTTCTGCCTGGAAAGCTAATGCAACTGGGAGAA
ACTCTAATTCAATGAGGGAGTTTCTGGAGAAAAACTATAAGGAAACTTCC
GGGCAAGAAACTATAAAGCTTGCAATTCGGGCATTACTTGAGGTTGTTGA
GAGTGGGGGCAAAAACATAGAAGTTGCTGTGATGACAA
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