FC931541

Overview
NameFC931541
Unique NameFC931541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10943 contig Ccv1_Contig10943:26..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA7_CHICK (Proteasome subunit alpha type-7 OS=Gallus gallus GN=PSMA7 PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 9.149e-79
Identity = 150/210 (71.43%), Postives = 175/210 (83.33%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQE---TIKLAIRALLEVVESGGKNIEVAVM 684
            YDRAITVFSPDGHLFQVEYA EAV+KG+ AVGVRG D +VLGVEKKS  KLQD R+VRKI +LD+++ +A AGL ADAR++INRAR+ECQSHRLTVEDPVTVEYITRYIA L+Q+YTQS   RPFG+S LIVGFD + G P LYQTDPSGT+ AWKANA GR + S+R   EKNY + + +    TIKL I+ALLEVV+SGGKNIE+AVM
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSKRRRPFGISALIVGFD-FDGTPRLYQTDPSGTYHAWKANAIGRGAKSVRVEFEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVM 211          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA7_YEAST (Proteasome component PRE6 OS=Saccharomyces cerevisiae GN=PRE6 PE=1 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 8.861e-74
Identity = 130/215 (60.47%), Postives = 175/215 (81.40%), Query Frame = 1
Query:   55 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSR-SVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE----TSGQETIKLAIRALLEVVESGGKNIEVAVM 684
            M+ YDRA+++FSPDGH+FQVEYALEAV++G  AVGV+G + +VLG E++ST+KLQD+R +  K+  +D+H+ L+ +GL AD+R+LI +AR+E QSHRLT+EDPVTVEY+TRY+AG+QQ+YTQSGGVRPFG+STLI GFDP    P LYQT+PSG +S+W A   GRNS ++REFLEKNY       + +E +KL +R+LLEVV++G KNIE+ V+
Sbjct:    1 MSGYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQTGAKNIEITVV 215          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA71_DROME (Proteasome subunit alpha type-7-1 OS=Drosophila melanogaster GN=Pros28.1 PE=1 SV=2)

HSP 1 Score: 273.092 bits (697), Expect = 9.797e-73
Identity = 138/212 (65.09%), Postives = 169/212 (79.72%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE---TSGQETIKLAIRALLEVVESGGKNIEVAVM 684
            +RYDRA+T+FSPDGHL QVEYA EAVRKG+ AVGVRG + +VLGVEKKS  +LQ+ R VRKI  LDNH+ +A AGL ADAR++INRA++ECQSHRL VEDPVT+EYITR+IA L+QKYTQS G RPFG+S LI GFD   G   L+QT+PSG F  +KANATGR++  +REF EK+Y+E    +    +KLAIRALLEV +SG  N+EVA+M
Sbjct:    3 SRYDRAVTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKKSVAQLQEDRKVRKICMLDNHVVMAFAGLTADARIMINRAQVECQSHRLNVEDPVTLEYITRFIAQLKQKYTQSNGRRPFGISCLIGGFDA-DGSAHLFQTEPSGIFYEYKANATGRSAKVVREFFEKSYREEEVANEHGAVKLAIRALLEVAQSGQNNLEVAIM 213          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA71_DROVI (Proteasome subunit alpha type-7-1 OS=Drosophila virilis GN=Pros28.1 PE=3 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 3.853e-69
Identity = 138/212 (65.09%), Postives = 169/212 (79.72%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE---TSGQETIKLAIRALLEVVESGGKNIEVAVM 684
            +RYDRA+T+FSPDG L QVEYA EAVRKG+ AVGVRG + +VLGVEKKS  KLQ+ R+VRKI  LD H+ +A AGL  DAR+LINRA++ECQSHRL VEDPVT+EYITRYIA L+QKYTQS G RPFG+S LI GFD   G P L+QT+PSG F  +KANATG ++ ++REF EK Y+E   ++ +  +KLAIRALLEV +SG  N+EVA+M
Sbjct:    3 SRYDRAVTIFSPDGRLLQVEYAQEAVRKGSTAVGVRGGNCVVLGVEKKSVAKLQEDRTVRKICVLD-HVVMAFAGL-TDARILINRAQVECQSHRLNVEDPVTLEYITRYIAQLKQKYTQSNGRRPFGISCLIGGFDA-DGSPYLFQTEPSGIFYEYKANATGCSAKTVREFFEKQYREEEVSTERGAVKLAIRALLEVAQSGQHNLEVAIM 211          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA7_SCHPO (Probable proteasome subunit alpha type-7 OS=Schizosaccharomyces pombe GN=SPBC106.16 PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.912e-68
Identity = 124/211 (58.77%), Postives = 166/211 (78.67%), Query Frame = 1
Query:   55 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGKNIEVAVM 684
            M+ YDRA++VFSPDG L QVEY  EAVR+G  A+ +RG + IV+GVE+K+  KLQ+  + +KI  +DNH+ LA AGL ADAR+LI++AR+E Q+H+L + DPV++EY+TRY+AG+QQKYTQSGGVRPFG+STLI GFD     P +YQT+P+G ++AWKA A GR S + RE+LEKN+KE  S  ETI LA+ +LLEVV++   NIE+A+M
Sbjct:    1 MSGYDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNFQKIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEKNWKEGLSRDETIHLAVSSLLEVVQTASGNIELAIM 211          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA7_CAEEL (Proteasome subunit alpha type-7 OS=Caenorhabditis elegans GN=pas-4 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.261e-68
Identity = 130/213 (61.03%), Postives = 167/213 (78.40%), Query Frame = 1
Query:   55 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQE---TIKLAIRALLEVVESGGKNIEVAVM 684
            M RYDRAIT+FSPDGHLFQVEYA EAV+KG+ AVGVRG D IV+GVEKKS   LQD R++RKI  +D+H+ LA AGL ADARVL++RARIECQS++LT+EDPVTV YI+RYIA  +Q++TQS G RPFG+S LI GFD + G P L++T+PSG +  + ANATGR    +RE+LE+ Y E +  +   T+KL +++L +VV  G +NIE+AVM
Sbjct:    1 MNRYDRAITIFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDCIVIGVEKKSIPALQDDRTIRKIHMIDDHVMLAFAGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGRRPFGISMLIGGFD-HDGTPRLFKTEPSGAYYEYVANATGRGEKPVREYLEEQYSEENTVDEATTLKLVVKSLAQVVPPGSQNIEIAVM 212          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA7_TRYBB (Proteasome subunit alpha type-7 OS=Trypanosoma brucei brucei GN=PSA4 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 6.365e-64
Identity = 125/208 (60.10%), Postives = 156/208 (75.00%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGKNIEVAVM 684
            YDRAITVFSPDGHLFQVEYA EAVRKG  AVGV+G D+I+  VEKKS  KLQDSR+ RKI  LD HI LA AGL ADARV++N A++ECQ  RL+ ED + V+ + RY+A +QQ+ TQS G RP+G+ST+I GF+   G P L++T+PSGT SAW A A GRN   + EF+EKNY++  +    +  AI+ALLE VESG KNIE+ V+
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVRKGLCAVGVKGKDSIIFAVEKKSVQKLQDSRTTRKIYKLDEHIYLASAGLSADARVVVNHAQLECQRFRLSYEDAIDVDLLVRYVARVQQRSTQSSGSRPYGVSTIIGGFNE-NGQPQLWKTEPSGTSSAWNAAAIGRNDKVVLEFMEKNYQDGMTRDRCVHFAIKALLEAVESGSKNIELLVL 209          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA72_DROME (Proteasome subunit alpha type-7-1A OS=Drosophila melanogaster GN=Pros28.1A PE=2 SV=2)

HSP 1 Score: 243.817 bits (621), Expect = 6.365e-64
Identity = 127/212 (59.91%), Postives = 159/212 (75.00%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE---TSGQETIKLAIRALLEVVESGGKNIEVAVM 684
            +RY RA+T+FSPDGHL QVEYA EAVRKG+ AVGVRG + +VLGVEK S  ++Q+ R+VRKI  LD H+ALA AGL ADAR+LINR ++ECQSHRL  E+ VT+EYITRY+A L+QKYTQ  G RPFG+S LI G D   G   L+ T+PSG F  +KA ATGR +N++REF EK Y +   T+  + IKLA+RALLEV +     +EVAV+
Sbjct:    3 SRYGRALTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKSSVSEMQEDRTVRKISMLDRHVALAFAGLTADARILINRGQVECQSHRLNFENQVTLEYITRYLAQLKQKYTQCNGRRPFGISCLIGGIDA-DGSARLFHTEPSGIFHEYKATATGRWANTVREFFEKAYSDHEVTTKCDAIKLAMRALLEVTQMSQMRLEVAVL 213          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA73_DROME (Proteasome subunit alpha type-7-1B OS=Drosophila melanogaster GN=Pros28.1B PE=2 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.052e-58
Identity = 117/212 (55.19%), Postives = 151/212 (71.23%), Query Frame = 1
Query:   61 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE--TSGQE--TIKLAIRALLEVVESGGKNIEVAVM 684
            RYDRA+T++SPDGHL QVEYA EAVR+G+  +G+R  + IV+GVEK+S   LQ+ R VRKI  LD+H+ +  +GL ADAR+L++RA++E QSHRL  E P TVEYITRYIA L+Q YTQS G RPFGLS L+ GFD   G P L+QTDPSG F  W+AN TGR+S  +R+++EK+  E  T   E   IK  +R L+ V       +EVAV+
Sbjct:    4 RYDRAVTIYSPDGHLLQVEYAQEAVRRGSTVMGLRTNNAIVIGVEKRSVGDLQEERMVRKICMLDDHVVMTFSGLTADARILVSRAQMEAQSHRLNFEKPTTVEYITRYIAQLKQNYTQSNGRRPFGLSCLVGGFDE-DGTPHLFQTDPSGIFYEWRANTTGRSSQPVRDYMEKHADEILTIADEAAAIKHIVRTLVSVSSLNHTQMEVAVL 214          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_PYRHO (Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.231e-50
Identity = 109/212 (51.42%), Postives = 142/212 (66.98%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGQETIKLAIRALLEVVES-GGKNIEVAVMT 687
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  + +VL VEK+ T +L +  S  KI  +D+HIA A +G+ ADARVL+NRAR+E Q HRLT  +P  +  I + I  L+Q +TQ GGVRPFG + L+ G +     P LY+TDPSG + AWKA A G   N+     E+ YK + S +E IKLAI AL + +E    +NIEVA++T
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCNEGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVNE---KPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYKDDMSLEEAIKLAIFALAKTMEKPSAENIEVAIIT 216          
The following BLAST results are available for this feature:
BLAST of FC931541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSA7_CHICK9.149e-7971.43Proteasome subunit alpha type-7 OS=Gallus gallus G... [more]
PSA7_YEAST8.861e-7460.47Proteasome component PRE6 OS=Saccharomyces cerevis... [more]
PSA71_DROME9.797e-7365.09Proteasome subunit alpha type-7-1 OS=Drosophila me... [more]
PSA71_DROVI3.853e-6965.09Proteasome subunit alpha type-7-1 OS=Drosophila vi... [more]
PSA7_SCHPO1.912e-6858.77Probable proteasome subunit alpha type-7 OS=Schizo... [more]
PSA7_CAEEL3.261e-6861.03Proteasome subunit alpha type-7 OS=Caenorhabditis ... [more]
PSA7_TRYBB6.365e-6460.10Proteasome subunit alpha type-7 OS=Trypanosoma bru... [more]
PSA72_DROME6.365e-6459.91Proteasome subunit alpha type-7-1A OS=Drosophila m... [more]
PSA73_DROME1.052e-5855.19Proteasome subunit alpha type-7-1B OS=Drosophila m... [more]
PSMA_PYRHO5.231e-5051.42Proteasome subunit alpha OS=Pyrococcus horikoshii ... [more]

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Properties
Property NameValue
Genbank descriptionC34106C03EF PostHarvP1 Citrus clementina cDNA clone C34106C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931541 ID=FC931541; Name=FC931541; organism=Citrus clementina; type=EST; length=688bp
GAATCAGAGAGACGCAGAAATCGATCGAGAAGAGGAAAATCAGAGAGATT
TGACATGGCGAGATACGATCGAGCAATCACTGTATTTTCACCGGATGGCC
ACCTGTTCCAAGTGGAATACGCACTAGAGGCCGTACGCAAAGGCAACGCC
GCCGTCGGCGTGCGCGGCACCGACACCATCGTTCTTGGCGTCGAAAAGAA
ATCCACTGTCAAGCTTCAGGATTCTAGATCAGTGAGGAAGATTGTCAGCT
TGGATAATCATATTGCATTGGCCTGTGCTGGACTTAAAGCAGATGCTCGT
GTCCTGATAAACAGGGCTCGAATAGAATGTCAGAGCCACAGGCTGACTGT
TGAGGACCCAGTAACTGTTGAGTACATCACTCGATACATTGCAGGTCTCC
AGCAGAAGTACACACAAAGCGGTGGTGTGAGACCATTTGGTCTTTCTACT
CTGATTGTGGGCTTTGATCCATACACTGGCGTGCCGTCACTATATCAGAC
AGATCCTTCTGGGACATTTTCTGCCTGGAAAGCTAATGCAACTGGGAGAA
ACTCTAATTCAATGAGGGAGTTTCTGGAGAAAAACTATAAGGAAACTTCC
GGGCAAGAAACTATAAAGCTTGCAATTCGGGCATTACTTGAGGTTGTTGA
GAGTGGGGGCAAAAACATAGAAGTTGCTGTGATGACAA
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