FC931541

Overview
NameFC931541
Unique NameFC931541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10943 contig Ccv1_Contig10943:26..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA73_DROVI (Proteasome subunit alpha type-7-1B OS=Drosophila virilis GN=Pros28.1B PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.923e-50
Identity = 108/214 (50.47%), Postives = 143/214 (66.82%), Query Frame = 1
Query:   55 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETS----GQETIKLAIRALLEVVESGGKNIEVAVM 684
            M+R+D ++ ++S DGHL QVEYA EAVRKG+  VG+R  + +VLGVEK++   LQ  R+ RKI  +D H+A+  AGL ADARVL++RA++E QSHRL  + P +VEYITRY+A L+Q YTQS   RPFG+S LI GFD   G P L+QTDPSG +  W AN TGR   ++ E+LEKN    S        +K  +RAL         +IE+AV+
Sbjct:    1 MSRFDESVNIYS-DGHLLQVEYAQEAVRKGST-VGLRTKECVVLGVEKRAIDSLQIERTSRKIKKIDQHMAMTFAGLTADARVLVSRAQVEAQSHRLNFDRPASVEYITRYLARLKQTYTQSVARRPFGVSCLIGGFDE-DGRPRLFQTDPSGIYYEWSANTTGRLGQTVNEYLEKNTAAISRTPDAASAMKHVVRALFTATSLDPASIELAVL 211          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAB (Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.596e-49
Identity = 109/212 (51.42%), Postives = 140/212 (66.04%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGQETIKLAIRALLEVVES-GGKNIEVAVMT 687
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  D +VL VEK+ T +L +  S  KI  +D+HIA A +G+ ADARVL+NRAR+E Q HRLT  +P  +  I + I  L+Q +TQ GGVRPFG + L+ G +     P LY+TDPSG + AWKA A G   N+     E  Y+ + +  E IKLAI AL + +E    +NIEVAV+T
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCKDGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVN---DKPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEDKYRDDMTLDEAIKLAIFALAKTMEKPSAENIEVAVIT 216          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_PYRFU (Proteasome subunit alpha OS=Pyrococcus furiosus GN=psmA PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.289e-48
Identity = 106/212 (50.00%), Postives = 141/212 (66.51%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES-GGKNIEVAVMT 687
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  + +VL VEK+ T +L +  S  KI  +D+HIA A +G+ ADARVL+NRAR+E Q +RLT  +P  V  I + I  L+Q +TQ GGVRPFG + L+ G +     P LY+TDPSG + AWKA A G   N+     E+ Y++    ++ IKLA+ AL + +E+    NIEVAV+T
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCGEGVVLAVEKRITSRLIEPDSYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIYRLTYGEPAPVSVIVKKICDLKQMHTQYGGVRPFGAALLMAGINDR---PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDDMNLEDAIKLALMALAKTMENPSADNIEVAVIT 216          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.091e-47
Identity = 103/210 (49.05%), Postives = 139/210 (66.19%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEV--VESGGKNIEVAVM 684
            YDRAITVFSPDG LFQVEYA EAV++G  A+G++  + +VLGV+K+ T KL +  S+ K+  +D HI  A AGL ADARVL+ RARIE Q++R T  +P+ V+ + + I  L+Q YTQ GGVRPFG + LI G D  T    L++TDPSG  +  KA A G       +  E+ Y+E  + QE I+LA+RAL E    E+   N+E+AV+
Sbjct:   10 YDRAITVFSPDGRLFQVEYAREAVKRGTTALGIKVEEGVVLGVDKRVTSKLIEPESIEKVYQIDTHIGAATAGLVADARVLVERARIEAQTYRYTYGEPIDVDVLVKAICDLKQVYTQHGGVRPFGTALLIAGVD--TKGCRLFETDPSGALTEHKATAIGEGRQEALDVFEEEYREDMTLQEAIELAVRALYEASREETTADNLEIAVV 217          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_THESM (Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=psmA PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.425e-47
Identity = 104/212 (49.06%), Postives = 144/212 (67.92%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGQETIKLAIRALLEVVES-GGKNIEVAVMT 687
            A YDRAITVFSPDG LFQV+YA EAV++G  AVGV+  D +VL VEK+ T KL +  S  KI  +D+HIA A +G+ ADARVL++RAR+E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P L++TDPSG +  WKA A G   N+     E+ Y+ E + +E IKLA+ AL +++E    ++IEVAV++
Sbjct:    8 AGYDRAITVFSPDGRLFQVQYAREAVKRGATAVGVKCKDGVVLAVEKRVTSKLIEPESYEKIFQIDDHIAAASSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQMHTQYGGVRPFGAALLMAGVNE---KPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEKYRDEMTLEEAIKLAVLALSKIMEEPSPESIEVAVIS 216          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_THEK1 (Proteasome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=psmA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.206e-46
Identity = 104/212 (49.06%), Postives = 141/212 (66.51%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQ-ETIKLAIRALLEVVES-GGKNIEVAVMT 687
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  D +VL VEK+ T KL +  S  KI  +D+HIA A +G+ ADARVL++RAR+E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P L++TDPSG +  WKA A G   N+     E++Y++  G+ + IKLAI AL + +E    + IEVA +T
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLIEPSSYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNE---KPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRDDIGKDDAIKLAILALAKTLEEPTAEGIEVAYIT 216          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_PYRKO (Proteasome subunit alpha OS=Pyrococcus kodakaraensis GN=psmA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.206e-46
Identity = 104/212 (49.06%), Postives = 141/212 (66.51%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQ-ETIKLAIRALLEVVES-GGKNIEVAVMT 687
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  D +VL VEK+ T KL +  S  KI  +D+HIA A +G+ ADARVL++RAR+E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P L++TDPSG +  WKA A G   N+     E++Y++  G+ + IKLAI AL + +E    + IEVA +T
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLIEPSSYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNE---KPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRDDIGKDDAIKLAILALAKTLEEPTAEGIEVAYIT 216          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_ARCFU (Proteasome subunit alpha OS=Archaeoglobus fulgidus GN=psmA PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.575e-46
Identity = 101/207 (48.79%), Postives = 140/207 (67.63%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGQETIKLAIRALLEVVESG--GKNIEV 675
            YDRAITVFSPDG LFQVEYA EAV++G  A+G++  + ++L  +K+   KL ++ ++ KI  +D HI  A +GL ADARVLI+RARIE Q +RLT ++P+TV+ + + I   +Q+YTQ GGVRPFG+S LI G D    VP LY+TDPSG    +KA A G   N++ EF EK Y+ + S  + + L + A+   +ES    +NIEV
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDE---VPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEV 211          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAE (Proteasome subunit alpha OS=Pyrobaculum aerophilum GN=psmA PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.509e-46
Identity = 102/213 (47.89%), Postives = 140/213 (65.73%), Query Frame = 1
Query:   55 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGQETIKLAIRALLEVVE-SGGKNIEVAVMT 687
            MA YDRAIT+FSP+G ++QVEYA EAV++G   VGV+    +VL  EK+    L DS S+ KI  +D H+A + +GL ADAR+LI+ AR    SHR   ++P+ VE++T+ +  L+Q+YTQ GG RPFG++ LI G D +     LYQTDPSG +  + A A G  S ++ EFLEKNYK +    E I+LA++AL   VE +   N+EVA  T
Sbjct:    6 MAGYDRAITIFSPEGKIYQVEYAGEAVKRGWPTVGVKCKAGVVLTAEKRKISALFDSSSLEKIYLIDEHVAASPSGLLADARILIDYARDVALSHRFIYDEPIDVEFLTKAVCNLKQQYTQFGGARPFGVALLIAGVDRHGA--RLYQTDPSGVYIGYFATAIGAESGTITEFLEKNYKFDMEMGECIELALKALASAVEITDSANVEVAYAT 216          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_METJA (Proteasome subunit alpha OS=Methanocaldococcus jannaschii GN=psmA PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.817e-46
Identity = 99/210 (47.14%), Postives = 140/210 (66.67%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGQETIKLAIRALLEVVES-GGKNIEVAVMT 687
            YDRAITVFSP+G L+QVEYA EAVR+G  A+G+   D +VL V+++ T KL   RS+ KI  +D+H+A A +GL ADARVLI+RAR+E Q +RLT  + +++E + + I  ++Q YTQ GGVRPFG+S LI G D       L++TDPSG    +KA A G     + E LEK Y+ + +  E ++LAI AL +  E    +N++V ++T
Sbjct:    9 YDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGID--KNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANEDIKPENVDVCIIT 216          
The following BLAST results are available for this feature:
BLAST of FC931541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSA73_DROVI8.923e-5050.47Proteasome subunit alpha type-7-1B OS=Drosophila v... [more]
PSMA_PYRAB2.596e-4951.42Proteasome subunit alpha OS=Pyrococcus abyssi GN=p... [more]
PSMA_PYRFU1.289e-4850.00Proteasome subunit alpha OS=Pyrococcus furiosus GN... [more]
PSMA_METKA1.091e-4749.05Proteasome subunit alpha OS=Methanopyrus kandleri ... [more]
PSMA_THESM1.425e-4749.06Proteasome subunit alpha OS=Thermococcus sibiricus... [more]
PSMA_THEK11.206e-4649.06Proteasome subunit alpha OS=Thermococcus sp. (stra... [more]
PSMA_PYRKO1.206e-4649.06Proteasome subunit alpha OS=Pyrococcus kodakaraens... [more]
PSMA_ARCFU1.575e-4648.79Proteasome subunit alpha OS=Archaeoglobus fulgidus... [more]
PSMA_PYRAE3.509e-4647.89Proteasome subunit alpha OS=Pyrobaculum aerophilum... [more]
PSMA_METJA7.817e-4647.14Proteasome subunit alpha OS=Methanocaldococcus jan... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34106C03EF PostHarvP1 Citrus clementina cDNA clone C34106C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931541 ID=FC931541; Name=FC931541; organism=Citrus clementina; type=EST; length=688bp
GAATCAGAGAGACGCAGAAATCGATCGAGAAGAGGAAAATCAGAGAGATT
TGACATGGCGAGATACGATCGAGCAATCACTGTATTTTCACCGGATGGCC
ACCTGTTCCAAGTGGAATACGCACTAGAGGCCGTACGCAAAGGCAACGCC
GCCGTCGGCGTGCGCGGCACCGACACCATCGTTCTTGGCGTCGAAAAGAA
ATCCACTGTCAAGCTTCAGGATTCTAGATCAGTGAGGAAGATTGTCAGCT
TGGATAATCATATTGCATTGGCCTGTGCTGGACTTAAAGCAGATGCTCGT
GTCCTGATAAACAGGGCTCGAATAGAATGTCAGAGCCACAGGCTGACTGT
TGAGGACCCAGTAACTGTTGAGTACATCACTCGATACATTGCAGGTCTCC
AGCAGAAGTACACACAAAGCGGTGGTGTGAGACCATTTGGTCTTTCTACT
CTGATTGTGGGCTTTGATCCATACACTGGCGTGCCGTCACTATATCAGAC
AGATCCTTCTGGGACATTTTCTGCCTGGAAAGCTAATGCAACTGGGAGAA
ACTCTAATTCAATGAGGGAGTTTCTGGAGAAAAACTATAAGGAAACTTCC
GGGCAAGAAACTATAAAGCTTGCAATTCGGGCATTACTTGAGGTTGTTGA
GAGTGGGGGCAAAAACATAGAAGTTGCTGTGATGACAA
back to top