FC931541

Overview
NameFC931541
Unique NameFC931541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10943 contig Ccv1_Contig10943:26..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_SULIA (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.27) GN=psmA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.618e-45
Identity = 91/201 (45.27%), Postives = 135/201 (67.16%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK 663
            YDRAIT+FSPDG L+QV+YA EAV+KG  A+G++    +V+  EK+    L D  S+ K+  +D+H+  + AGL +D RVLI+ AR     HRL  ++PV+++Y+T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLEKNYKE  + ++TI LA++AL   ++   K
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEK 208          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_METVS (Proteasome subunit alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=psmA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.129e-44
Identity = 98/209 (46.89%), Postives = 138/209 (66.03%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKET-SGQETIKLAIRALLEVVES-GGKNIEVAVM 684
            YDRAIT+FSP+G L+QVEYA EAVR+G  AVG++  D +VL V+++ T KL D  S+ KI  +D+HI  A +GL ADARVLI+RAR+E Q +R++  + +TVE + + I  ++Q YT  GG RPFGL+ LI G D ++    L++TDPSG    +KA A G       E LE+ Y E  S  E ++LAI AL +  E    +NI++A++
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARVEAQVNRISYGEAITVEALAKKICDIKQAYTHHGGARPFGLALLITGIDRHSA--RLFETDPSGALIEYKATAIGSGRPVAMEILEEKYDENMSVSEGMELAIYALSKTTEELKPENIDMAIV 216          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_METMP (Proteasome subunit alpha OS=Methanococcus maripaludis GN=psmA PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.474e-44
Identity = 98/209 (46.89%), Postives = 138/209 (66.03%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKET-SGQETIKLAIRALLEVVES-GGKNIEVAVM 684
            YDRAIT+FSP+G L+QVEYA EAVR+G  AVG++  D +VL V+++ T KL D  S+ KI  +D+HI  A +GL ADARVLI+RARIE Q +R++  + +TVE + + I  ++Q YTQ GG RPFGL+ LI G D ++    L++TDPSG    +KA A G       E LE  Y E  +  E ++LA+ AL +  E    +NI++A++
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARIEAQMNRVSYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSA--RLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVSEGMELALYALSKTTEELKPENIDMAII 216          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_METM7 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=psmA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.925e-44
Identity = 97/209 (46.41%), Postives = 138/209 (66.03%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKET-SGQETIKLAIRALLEVVES-GGKNIEVAVM 684
            YDRAIT+FSP+G L+QVEYA EAVR+G  AVG++  D +VL V+++ T KL D  S+ KI  +D+HI  A +GL ADARVLI+RAR+E Q +R++  + +TVE + + I  ++Q YTQ GG RPFGL+ LI G D ++    L++TDPSG    +KA A G       E LE  Y E  +  E ++LA+ AL +  E    +NI++A++
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSA--RLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVNEGMELALYALSKTTEELKPENIDMAIV 216          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_METM5 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=psmA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.925e-44
Identity = 97/209 (46.41%), Postives = 138/209 (66.03%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES-GGKNIEVAVM 684
            YDRAIT+FSP+G L+QVEYA EAVR+G  AVG++  D +VL V+++ T KL D  S+ KI  +D+HI  A +GL ADARVLI+RAR+E Q +R++  + +TVE + + I  ++Q YTQ GG RPFGL+ LI G D ++    L++TDPSG    +KA A G       E LE  Y E  +  E ++LA+ AL +  E    +NI++A++
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSA--RLFETDPSGALIEYKATAIGSGRPIAMEVLESKYSEDMTVNEGMELALYALSKTTEELKPENIDMAIV 216          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_METM6 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=psmA PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.515e-44
Identity = 97/209 (46.41%), Postives = 137/209 (65.55%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETS-GQETIKLAIRALLEVVES-GGKNIEVAVM 684
            YDRAIT+FSP+G L+QVEYA EAVR+G  AVG++  D +VL V+++ T KL D  S+ KI  +D+HI  A +GL ADARVLI+RAR+E Q +R++  + +TVE + + I  ++Q YTQ GG RPFGL+ LI G D ++    L++TDPSG    +KA A G       E LE  Y E     E ++LA+ AL +  E    +NI++A++
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCNDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSA--RLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMIVSEGMELALYALSKTTEELKPENIDMAIV 216          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_METBF (Proteasome subunit alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=psmA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.284e-44
Identity = 94/211 (44.55%), Postives = 136/211 (64.45%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQE-TIKLAIRALLEVVES--GGKNIEVAVMT 687
            YDRAITVFSPDG LFQVEYA EAV++G  AVG++  D +VL V+K+ T +L ++ S+ KI  +D+HI  A +GL ADAR L++RAR+E Q +R++ ++P+ VE I++ I   +Q YTQ GGVRP+G + LI G D    +P L++TDPSG    +KA A G   N++ E  E  Y++    +  I L + AL    E       +EV +++
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVD--DNLPRLFETDPSGALLEYKATAIGAGRNAVVEVFEAEYRQDMNMDAAILLGMDALYRAAEGKFDASTLEVGIVS 217          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_METAC (Proteasome subunit alpha OS=Methanosarcina acetivorans GN=psmA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.284e-44
Identity = 96/211 (45.50%), Postives = 136/211 (64.45%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQE-TIKLAIRALLEVVES--GGKNIEVAVMT 687
            YDRAITVFSPDG LFQVEYA EAV++G  AVG++  D +VL V+K+ T +L ++ S+ KI  +D HI  A +GL ADAR L++RAR+E Q +R++ ++P+ VE I++ I   +Q YTQ GGVRP+G + LI G D     P L++TDPSG    +KA A G   N++ E  E +Y+E    +  I L + AL +  E       +EV V++
Sbjct:    7 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDEHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVD--DNKPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNMDAAILLGMDALYKAAEGKFDAGTLEVGVVS 215          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_SULAC (Proteasome subunit alpha OS=Sulfolobus acidocaldarius GN=psmA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.317e-44
Identity = 91/201 (45.27%), Postives = 131/201 (65.17%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVESGGK 663
            YDRAIT+FSPDG L+QV+YA EAV++G   +GV+    +VL  EK+   +L D   + KI  LD+H+    AGL +D R+LI+ AR +   HRL  ++P+++EY+T+ I+ ++Q YTQ GGVRPFG++ ++ G D     P L  T+PSG F  + A A G+   +  E+LEKNYKE    Q TI LA+RAL+  ++ G K
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKRGWTTLGVKTKSGVVLLAEKRKATQLLDVDGIEKIFMLDDHVGCTFAGLASDGRILIDYARSQALQHRLIYDEPISIEYLTKVISDVKQAYTQHGGVRPFGVALIVGGIDK-GKQPKLLMTEPSGQFMPYYAVAIGQGGYTATEYLEKNYKEDLDIQSTILLALRALMATLKPGEK 209          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_METTE (Proteasome subunit alpha OS=Methanosarcina thermophila GN=psmA PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.248e-43
Identity = 97/211 (45.97%), Postives = 136/211 (64.45%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQE-TIKLAIRALLEVVES--GGKNIEVAVMT 687
            YDRAITVFSPDG LFQVEYA EAV++G  AVG++  D +VL V+K+ T +L ++ S+ KI  +D+HI  A +GL ADAR L++RAR+E Q +R++ ++ + VE I++ I   +Q YTQ GGVRP+G + LI G D     P L++TDPSG    +KA A G   N++ E  E +YKE    E  I L + AL +  E       +EV V++
Sbjct:    7 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARALVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDKR--PRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYKEDMNIEAAILLGMDALYKAAEGKFDAGTLEVGVVS 215          
The following BLAST results are available for this feature:
BLAST of FC931541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSMA_SULIA6.618e-4545.27Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_METVS1.129e-4446.89Proteasome subunit alpha OS=Methanococcus vannieli... [more]
PSMA_METMP1.474e-4446.89Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METM71.925e-4446.41Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METM51.925e-4446.41Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METM62.515e-4446.41Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METBF3.284e-4444.55Proteasome subunit alpha OS=Methanosarcina barkeri... [more]
PSMA_METAC3.284e-4445.50Proteasome subunit alpha OS=Methanosarcina acetivo... [more]
PSMA_SULAC7.317e-4445.27Proteasome subunit alpha OS=Sulfolobus acidocaldar... [more]
PSMA_METTE1.248e-4345.97Proteasome subunit alpha OS=Methanosarcina thermop... [more]

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Properties
Property NameValue
Genbank descriptionC34106C03EF PostHarvP1 Citrus clementina cDNA clone C34106C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931541 ID=FC931541; Name=FC931541; organism=Citrus clementina; type=EST; length=688bp
GAATCAGAGAGACGCAGAAATCGATCGAGAAGAGGAAAATCAGAGAGATT
TGACATGGCGAGATACGATCGAGCAATCACTGTATTTTCACCGGATGGCC
ACCTGTTCCAAGTGGAATACGCACTAGAGGCCGTACGCAAAGGCAACGCC
GCCGTCGGCGTGCGCGGCACCGACACCATCGTTCTTGGCGTCGAAAAGAA
ATCCACTGTCAAGCTTCAGGATTCTAGATCAGTGAGGAAGATTGTCAGCT
TGGATAATCATATTGCATTGGCCTGTGCTGGACTTAAAGCAGATGCTCGT
GTCCTGATAAACAGGGCTCGAATAGAATGTCAGAGCCACAGGCTGACTGT
TGAGGACCCAGTAACTGTTGAGTACATCACTCGATACATTGCAGGTCTCC
AGCAGAAGTACACACAAAGCGGTGGTGTGAGACCATTTGGTCTTTCTACT
CTGATTGTGGGCTTTGATCCATACACTGGCGTGCCGTCACTATATCAGAC
AGATCCTTCTGGGACATTTTCTGCCTGGAAAGCTAATGCAACTGGGAGAA
ACTCTAATTCAATGAGGGAGTTTCTGGAGAAAAACTATAAGGAAACTTCC
GGGCAAGAAACTATAAAGCTTGCAATTCGGGCATTACTTGAGGTTGTTGA
GAGTGGGGGCAAAAACATAGAAGTTGCTGTGATGACAA
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