FC931541

Overview
NameFC931541
Unique NameFC931541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10943 contig Ccv1_Contig10943:26..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA4_DICDI (Proteasome subunit alpha type-4 OS=Dictyostelium discoideum GN=psmA4 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.371e-40
Identity = 88/208 (42.31%), Postives = 127/208 (61.06%), Query Frame = 1
Query:   61 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSV--RKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANAT-GRNSNSMREFLEKNYK-ETSGQETIKLAIRALLEVVESGGKNIE 672
            RYD+  T+FSP+G ++QVEYA+ A+R   A VG+   D IVL  EKK+T KL DS +    K+  +D H+  A AG+ +DA +LIN AR+  Q      ++P+ VE +   I   +Q YTQ GG+RPFG+S L  G+D + G   LYQ+DPSG F+ WKA +  G NS   +  L  NYK + S +E ++LA++ L + ++    N E
Sbjct:    4 RYDQRTTIFSPEGRVYQVEYAMTAIRHAGATVGILAKDGIVLAAEKKTTAKLLDSSTSISEKMFKIDEHVVCAVAGITSDANILINYARLSSQRFFYQYQEPMPVEQLVSQICDTKQGYTQYGGLRPFGVSFLYAGWDRHYGF-QLYQSDPSGNFAGWKATSIGGENSQVAQSVLRSNYKPDISLKEALQLALKVLTKTMDRSNINSE 210          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA4_PETHY (Proteasome subunit alpha type-4 OS=Petunia hybrida GN=PAC1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.093e-39
Identity = 81/200 (40.50%), Postives = 131/200 (65.50%), Query Frame = 1
Query:   61 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGQETIKLAIRALLEVVES 654
            RYD   T+FSP+G L+QVEYA+EA+    +A+G+   D +VL  EKK T KL Q S S  K+  +D+H+A A AG+ +DA +LIN AR++ Q +  + ++P+ VE + + +   +Q YTQ GG+ PFG+S L  G+D   G   L+ +DPSG ++ WKA A G N+ + +  L+++YK + + +E ++LA++ L + ++S
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGISSKDGVVLVGEKKVTSKLLQTSTSSEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQYGGLPPFGVSFLFAGWDKNFGF-QLFMSDPSGNYAGWKAAAIGANNQAAQSMLKQDYKDDITREEAVQLALKVLSKTMDS 202          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_PICTO (Proteasome subunit alpha OS=Picrophilus torridus GN=psmA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.865e-39
Identity = 92/208 (44.23%), Postives = 128/208 (61.54%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKET-SGQETIKLAIRALLEVV--ESGGKNIEVA 678
            YDRAITVFSPDG LFQVEYA EAV+KG+ A+G++  D + L  EKK   +L +  S+ KI  +D+ +A   +GL ADARVLI+ ARI  Q  ++T    + +E + + +A   Q+YTQ GGVRP+G+S +  G D     P L+  DP+GT + +K  + G   + +  +LEK YKE  S  E I++ I AL   V  ES  K  E+A
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGIKFKDGVALISEKKVRSRLVEKTSLEKIQLIDDRVAAVTSGLVADARVLIDFARISDQQEKVTYGSLMNIENLVKRVADQMQQYTQYGGVRPYGVSIIFAGLDSIG--PRLFDCDPAGTINEYKCVSIGAGKDQVTAYLEKEYKENLSEDEAIRMGIAALKSAVADESSMKEPEIA 213          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_METB6 (Proteasome subunit alpha OS=Methanoregula boonei (strain 6A8) GN=psmA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.155e-39
Identity = 86/197 (43.65%), Postives = 126/197 (63.96%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATG-RNSNSMREFLEKNYKETSGQETIKLAIRALLEVVE 651
            YDRAITVFSPDG L+QVEYA EAV++G  AVG++  D +VL V+K+ + KL +S S+ KI  +D HI +A +GL  DAR L++RARIECQ +R++ ++ + VE + + +    Q  TQ GG+RP+G + LI G     G   L++TDPSGT   +KA   G     +M+ F E+   + + ++ I L ++AL    E
Sbjct:    9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKAHDGVVLIVDKRVSSKLLESSSIEKIFKIDEHIGVASSGLVGDARALVDRARIECQINRVSYDERIEVEALAKKLCDHMQTLTQYGGIRPYGTALLIAGVS--DGESRLFETDPSGTLLEYKATGIGIGRPAAMKVFEEEYTADLALKDAILLGLKALHSATE 203          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_AERPE (Proteasome subunit alpha OS=Aeropyrum pernix GN=psmA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.087e-39
Identity = 82/209 (39.23%), Postives = 128/209 (61.24%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGQETIKLAIRALLEVVESGGKNIEVAVMT 687
            YDRA T+FSP+G L+QV YA EAV+KG  ++G++  + +V+  EK+    L D   + KI  +D+HI +A AG+  D R+LI+ AR+    HRL   +P  VE + + +A ++Q YTQ GGVRPFG++ +  G +P  G   +Y+TDP G + ++KA A G       E  EK+Y+ + S +E  KLA++ L  ++    ++ E A+ T
Sbjct:   12 YDRAATIFSPEGDLYQVRYAFEAVKKGWTSLGIKTNEGVVIAAEKRFIGPLVDIDDIDKIYKIDDHIGVAFAGMGGDGRILIDYARVFTVRHRLLYGEPPPVELVAKVVADVKQAYTQHGGVRPFGVALIFAGVNP-DGTTKVYRTDPGGQYFSFKAIAIGSGEQVANEMFEKHYRSDMSLEEATKLALKILYAIIRKTVEDKEKAIAT 219          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA2_XENLA (Proteasome subunit alpha type-2 OS=Xenopus laevis GN=psma2 PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 7.087e-39
Identity = 89/209 (42.58%), Postives = 124/209 (59.33%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAV 681
            Y  ++T FSP G L Q+EYAL AV  G  +VG++ T+ +VL  EKK    L D +S  K+  +  HI +  +G+  D RVL+ RAR   Q + L  ++P+    + + +A + Q+YTQSGGVRPFG+S LI G+D   G P L+Q+DPSG + AWKA A G+N  + + FLEK Y E    ++ I  AI  L E  E      NIEV +
Sbjct:    6 YSFSLTTFSPSGKLVQIEYALAAVAAGAPSVGIKATNGVVLATEKKQKSILYDEQSAHKVEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWD--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGI 212          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA5_SCHPO (Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces pombe GN=SPAC323.02c PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.256e-39
Identity = 85/219 (38.81%), Postives = 136/219 (62.10%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGG------VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMR-EFLEKNYKETSGQETIKLAIRALLEVVES--GGKNIEVAVMT 687
            + YDR +  FSP+G LFQVEYA+EA++ G+ A+GV+  D +VLGVEK+ T  L +S SV K+  +D+HI  A +GL ADAR +I  AR++ Q+HR T ++P  +E  T+ I  L  ++ +          RPFG++ LI G D +   P LY ++PSGT+  ++A A G  S   + E +++ +K+ + +E   L ++ L +V+E     KN+++A +T
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIAGIDEHG--PQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHKDMTLEEAEVLILKVLRQVMEEKLDSKNVQLAKVT 222          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA2_RAT (Proteasome subunit alpha type-2 OS=Rattus norvegicus GN=Psma2 PE=1 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 9.256e-39
Identity = 90/209 (43.06%), Postives = 125/209 (59.81%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAV 681
            Y  ++T FSP G L Q+EYAL AV  G  +VG++  + +VL  EKK    L D RSV K+  +  HI L  +G+  D RVL++RAR   Q + L  ++P+    + + +A + Q+YTQSGGVRPFG+S LI G++   G P L+Q+DPSG + AWKA A G+N  + + FLEK Y E    ++ I  AI  L E  E      NIEV +
Sbjct:    6 YSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGI 212          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA2_MOUSE (Proteasome subunit alpha type-2 OS=Mus musculus GN=Psma2 PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 9.256e-39
Identity = 90/209 (43.06%), Postives = 125/209 (59.81%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAV 681
            Y  ++T FSP G L Q+EYAL AV  G  +VG++  + +VL  EKK    L D RSV K+  +  HI L  +G+  D RVL++RAR   Q + L  ++P+    + + +A + Q+YTQSGGVRPFG+S LI G++   G P L+Q+DPSG + AWKA A G+N  + + FLEK Y E    ++ I  AI  L E  E      NIEV +
Sbjct:    6 YSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGI 212          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA2_HUMAN (Proteasome subunit alpha type-2 OS=Homo sapiens GN=PSMA2 PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 9.256e-39
Identity = 90/209 (43.06%), Postives = 125/209 (59.81%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAV 681
            Y  ++T FSP G L Q+EYAL AV  G  +VG++  + +VL  EKK    L D RSV K+  +  HI L  +G+  D RVL++RAR   Q + L  ++P+    + + +A + Q+YTQSGGVRPFG+S LI G++   G P L+Q+DPSG + AWKA A G+N  + + FLEK Y E    ++ I  AI  L E  E      NIEV +
Sbjct:    6 YSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGI 212          
The following BLAST results are available for this feature:
BLAST of FC931541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSA4_DICDI8.371e-4042.31Proteasome subunit alpha type-4 OS=Dictyostelium d... [more]
PSA4_PETHY1.093e-3940.50Proteasome subunit alpha type-4 OS=Petunia hybrida... [more]
PSMA_PICTO1.865e-3944.23Proteasome subunit alpha OS=Picrophilus torridus G... [more]
PSMA_METB64.155e-3943.65Proteasome subunit alpha OS=Methanoregula boonei (... [more]
PSMA_AERPE7.087e-3939.23Proteasome subunit alpha OS=Aeropyrum pernix GN=ps... [more]
PSA2_XENLA7.087e-3942.58Proteasome subunit alpha type-2 OS=Xenopus laevis ... [more]
PSA5_SCHPO9.256e-3938.81Probable proteasome subunit alpha type-5 OS=Schizo... [more]
PSA2_RAT9.256e-3943.06Proteasome subunit alpha type-2 OS=Rattus norvegic... [more]
PSA2_MOUSE9.256e-3943.06Proteasome subunit alpha type-2 OS=Mus musculus GN... [more]
PSA2_HUMAN9.256e-3943.06Proteasome subunit alpha type-2 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionC34106C03EF PostHarvP1 Citrus clementina cDNA clone C34106C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931541 ID=FC931541; Name=FC931541; organism=Citrus clementina; type=EST; length=688bp
GAATCAGAGAGACGCAGAAATCGATCGAGAAGAGGAAAATCAGAGAGATT
TGACATGGCGAGATACGATCGAGCAATCACTGTATTTTCACCGGATGGCC
ACCTGTTCCAAGTGGAATACGCACTAGAGGCCGTACGCAAAGGCAACGCC
GCCGTCGGCGTGCGCGGCACCGACACCATCGTTCTTGGCGTCGAAAAGAA
ATCCACTGTCAAGCTTCAGGATTCTAGATCAGTGAGGAAGATTGTCAGCT
TGGATAATCATATTGCATTGGCCTGTGCTGGACTTAAAGCAGATGCTCGT
GTCCTGATAAACAGGGCTCGAATAGAATGTCAGAGCCACAGGCTGACTGT
TGAGGACCCAGTAACTGTTGAGTACATCACTCGATACATTGCAGGTCTCC
AGCAGAAGTACACACAAAGCGGTGGTGTGAGACCATTTGGTCTTTCTACT
CTGATTGTGGGCTTTGATCCATACACTGGCGTGCCGTCACTATATCAGAC
AGATCCTTCTGGGACATTTTCTGCCTGGAAAGCTAATGCAACTGGGAGAA
ACTCTAATTCAATGAGGGAGTTTCTGGAGAAAAACTATAAGGAAACTTCC
GGGCAAGAAACTATAAAGCTTGCAATTCGGGCATTACTTGAGGTTGTTGA
GAGTGGGGGCAAAAACATAGAAGTTGCTGTGATGACAA
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