FC931546

Overview
NameFC931546
Unique NameFC931546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9385 contig Ccv1_Contig9385:73..788. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: ATR_ORYSJ (Serine/threonine-protein kinase ATR OS=Oryza sativa subsp. japonica GN=Os06g0724700 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.381e-24
Identity = 52/128 (40.62%), Postives = 81/128 (63.28%), Query Frame = 3
Query:   96 WLKSRTSE--IWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINW 473
            W  +  SE   W+  R  Y  + AV SMVG+++GLGDRH  N++L   +G  +H+DF   F+  +  EK PE VPFR T+ +V  + ++G EG F   CE  + VLR++++++M ++E F+HDPL+ W
Sbjct: 2512 WFLTTFSEPAAWIRARAAYAHTTAVWSMVGHIVGLGDRHGENILLDSTTGDCIHVDFSCLFDKGLLLEK-PEVVPFRFTQNMVDGLGITGYEGVFVKVCEITLSVLRTHKEALMTVLETFIHDPLVEW 2638          
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: ATR_ORYSI (Serine/threonine-protein kinase ATR OS=Oryza sativa subsp. indica GN=OsI_023634 PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.381e-24
Identity = 52/128 (40.62%), Postives = 81/128 (63.28%), Query Frame = 3
Query:   96 WLKSRTSE--IWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINW 473
            W  +  SE   W+  R  Y  + AV SMVG+++GLGDRH  N++L   +G  +H+DF   F+  +  EK PE VPFR T+ +V  + ++G EG F   CE  + VLR++++++M ++E F+HDPL+ W
Sbjct: 2512 WFLTTFSEPAAWIRARAAYAHTTAVWSMVGHIVGLGDRHGENILLDSTTGDCIHVDFSCLFDKGLLLEK-PEVVPFRFTQNMVDGLGITGYEGVFVKVCEITLSVLRTHKEALMTVLETFIHDPLVEW 2638          
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: ATM_SCHPO (Serine/threonine-protein kinase tel1 OS=Schizosaccharomyces pombe GN=tel1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.356e-24
Identity = 52/117 (44.44%), Postives = 78/117 (66.67%), Query Frame = 3
Query:  123 WLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINW 473
            W   +TNY RS AV S++G++LGLGDRH  N+++ + SG+++HID G  FE    +   PE VPFRLTR +V  M ++G+EG FR   E  ++ LR   DS+++++E   +DPL +W
Sbjct: 2605 WFTTQTNYARSTAVASVLGHVLGLGDRHGQNILIDKTSGEVIHIDLGIAFEQG-KKLPVPECVPFRLTRDVVDGMGITGVEGVFRRCMEFTLETLRREEDSLLSVLEVLRYDPLFSW 2720          
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: ATR_MOUSE (Serine/threonine-protein kinase ATR OS=Mus musculus GN=Atr PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.855e-24
Identity = 52/115 (45.22%), Postives = 74/115 (64.35%), Query Frame = 3
Query:  123 WLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLI 467
            W   R+ Y RS AVMSMVGY+LGLGDRH  N++   ++G+ +H+DF   F      E  PE VPFRLT  +V  M   G EG FR  CE  ++++R  R+ +M++++ F+HDPL+
Sbjct: 2441 WYSSRSAYCRSTAVMSMVGYILGLGDRHGENILFDSFTGECVHVDFNCLFNKGETFE-VPEIVPFRLTHNMVNGMGPMGTEGLFRRACEVTLRLMRDQREPLMSVLKTFLHDPLV 2554          
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: ATM_NEUCR (Serine/threonine-protein kinase tel-1 OS=Neurospora crassa GN=tel-1 PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.953e-24
Identity = 66/192 (34.38%), Postives = 100/192 (52.08%), Query Frame = 3
Query:  123 WLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRLFNFNEVPQMSVFANTHVPPVVNAEETAPNRELPQPQRGARERELLQAVNQLGDASEVLNGRAVVVMARMSNKL 698
            W  RRT YTR+ A +SM+G++LGLGDRH  N++L   +G+++HID G  FE        PE VPFRLTR +V  M ++  EG FR  CE  +  LR    S+M +++   +DPL +W +         +V        VV AE+          +R A +++  + +N+  +A   L     VV  ++S  L
Sbjct: 2733 WFARRTAYTRTTAAISMLGHVLGLGDRHGHNILLDTKTGEVVHIDLGVAFELG-RILPVPELVPFRLTRDIVDGMGITKTEGVFRRCCEFTLDALREETYSIMTILDVLRYDPLYSWSMSPLRMARLQNVRVGAGEDDVVEAED----------ERRAGDKKSTKNLNEPSEADRALE----VVRKKLSKTL 2909          
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: ATM_CANGA (Serine/threonine-protein kinase TEL1 OS=Candida glabrata GN=TEL1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.527e-23
Identity = 61/197 (30.96%), Postives = 100/197 (50.76%), Query Frame = 3
Query:  123 WLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRLFNFNEVPQM-SVFANTHVPPVVNAEETAPNRELPQPQRGARERELLQAVNQLGDASEVLNGRAVVVMARMSNKLQDVI 710
            W+  +  YT+ +A  SMVGY+LGLGDRH +N+++   +G+ +HID G  F+      K PE VPFRLTR ++    ++G+EG FR TCE V+ VL  + + VM ++     DPL +W +  F +   M       H+    N  +    +  P+      +    Q+   L    E L+   + + A +   +Q+ +
Sbjct: 2556 WICAKRKYTKGVATSSMVGYILGLGDRHLNNILIDTTTGEPIHIDLGIAFDQG-RLLKIPELVPFRLTRDIIDGFGITGVEGIFRRTCEQVLNVLSRDSEKVMCVLNILKWDPLYSWAVSPFKKHKYMYDDNLEGHMTTATNNSKVIERKLTPKLDSDENQ----QSYRALKGVQEKLDRNGLTIEATVEKLIQEAV 2747          
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: ATM_EMENI (Serine/threonine-protein kinase tel1 OS=Emericella nidulans GN=tel1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.994e-23
Identity = 60/166 (36.14%), Postives = 90/166 (54.22%), Query Frame = 3
Query:  102 KSRTSEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRLFNFNEVPQMSVFANTHVPPVVNAEETAPNRELPQPQRGAR 599
            K    + W  RR +YT+S A +S++G++LGLGDRH  N++L   +G+++HID G  FE        PE VPFRLTR LV  M ++  EG FR  CE  ++ LR    S+M +++   +DPL +W +     + +M     +  PPV+    T   R   +P    R
Sbjct: 2587 KFNNPDDWFGRRLSYTQSTAAISILGHVLGLGDRHGHNILLDERTGEVVHIDLGVAFEQG-RVLPVPEVVPFRLTRDLVDGMGITKTEGVFRRCCEFTLEALRQESYSIMTILDVLRYDPLYSWTVSPL-RMKKMQEQDTSDGPPVLPGSTTDQQRPTNEPSEADR 2750          
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: ATM_KLULA (Serine/threonine-protein kinase TEL1 OS=Kluyveromyces lactis GN=TEL1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.443e-23
Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = 3
Query:  123 WLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRL 479
            W E R  YT+S+   S+VGYLLGLGDRH +N+++   +G+ +HID G  F+        PE VPFRLTR +V    V+GIEG FR+ CE V +VL+  ++ ++ ++     DPL +W++
Sbjct: 2557 WYESRNRYTKSVVTSSIVGYLLGLGDRHLNNILIDIKTGEPIHIDLGVAFDQG-KLLPIPELVPFRLTRDIVDGFGVAGIEGLFRNNCERVFKVLQDEKERLLCVLNVLKWDPLYSWKM 2674          
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: ATM_ASPFU (Serine/threonine-protein kinase tel1 OS=Aspergillus fumigatus GN=tel1 PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.803e-23
Identity = 53/126 (42.06%), Postives = 78/126 (61.90%), Query Frame = 3
Query:  102 KSRTSEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRL 479
            K  + + W  +R +YTRS A +S++G++LGLGDRH  N++L   +G+++HID G  FE        PE VPFRLTR LV  M ++  EG FR  CE  ++ LR    S+M +++   +DPL +W L
Sbjct: 2590 KFNSPDDWFSKRLSYTRSTAAISILGHVLGLGDRHGHNILLDERTGEVVHIDLGVAFEQG-RVLPVPEVVPFRLTRDLVDGMGITKTEGVFRRCCEFTLEALRQESYSIMTILDVLRYDPLYSWTL 2714          
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: ATM_ASHGO (Serine/threonine-protein kinase TEL1 OS=Ashbya gossypii GN=TEL1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.579e-23
Identity = 51/121 (42.15%), Postives = 75/121 (61.98%), Query Frame = 3
Query:  117 EIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRL 479
            E WL  +  YT+ +   S+VG++LGLGDRH +N++L +++G+ +HID G  F+        PE VPFRLTR +V    V G+EG FR  CE V  +LR  R+ VM ++     DPL +W++
Sbjct: 2568 EEWLLAKATYTKGVVTNSIVGHILGLGDRHLNNILLDKFTGEPIHIDLGVAFDQG-KLLPLPELVPFRLTRDIVDGFGVMGVEGLFRKNCEKVYGLLRKERERVMCVLNVLKWDPLYSWKM 2687          
The following BLAST results are available for this feature:
BLAST of FC931546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ATR_ORYSJ1.381e-2440.63Serine/threonine-protein kinase ATR OS=Oryza sativ... [more]
ATR_ORYSI1.381e-2440.63Serine/threonine-protein kinase ATR OS=Oryza sativ... [more]
ATM_SCHPO2.356e-2444.44Serine/threonine-protein kinase tel1 OS=Schizosacc... [more]
ATR_MOUSE6.855e-2445.22Serine/threonine-protein kinase ATR OS=Mus musculu... [more]
ATM_NEUCR8.953e-2434.38Serine/threonine-protein kinase tel-1 OS=Neurospor... [more]
ATM_CANGA1.527e-2330.96Serine/threonine-protein kinase TEL1 OS=Candida gl... [more]
ATM_EMENI1.994e-2336.14Serine/threonine-protein kinase tel1 OS=Emericella... [more]
ATM_KLULA4.443e-2342.86Serine/threonine-protein kinase TEL1 OS=Kluyveromy... [more]
ATM_ASPFU5.803e-2342.06Serine/threonine-protein kinase tel1 OS=Aspergillu... [more]
ATM_ASHGO7.579e-2342.15Serine/threonine-protein kinase TEL1 OS=Ashbya gos... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34106C09EF PostHarvP1 Citrus clementina cDNA clone C34106C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931546 ID=FC931546; Name=FC931546; organism=Citrus clementina; type=EST; length=716bp
CACCAGATTATGACCATTTGCCTCTCATAGCCAAAGTGGAAGTTTTTGAA
TATGCTCTACAAAATACTGAAGGGAATGATCTGGCCAGGGTGCTTTGGTT
AAAAAGCCGTACTTCTGAAATATGGCTAGAGAGGAGGACGAACTATACCA
GAAGTTTAGCAGTGATGAGCATGGTTGGATACCTTCTTGGTTTAGGGGAT
CGGCACCCAAGTAATCTTATGCTGCACCGCTATAGTGGGAAAATTTTACA
CATAGATTTTGGGGACTGCTTTGAAGCTTCAATGAACCGGGAGAAGTTCC
CTGAAAAGGTTCCTTTTCGCTTGACTAGAATGCTTGTTAAAGCTATGGAG
GTTAGTGGTATTGAGGGCAACTTCCGTTCAACATGCGAAAATGTGATGCA
AGTTCTGCGCTCAAATAGGGATAGTGTTATGGCTATGATGGAGGCCTTTG
TTCATGATCCTCTCATCAATTGGCGTCTTTTCAATTTTAATGAAGTACCG
CAAATGTCAGTGTTTGCAAATACTCATGTCCCTCCTGTTGTGAATGCCGA
AGAAACTGCTCCAAATAGAGAACTTCCTCAACCACAACGGGGTGCTCGTG
AAAGGGAGCTTCTTCAGGCTGTTAATCAACTTGGTGATGCTAGTGAGGTT
TTGAATGGGCGTGCTGTGGTTGTCATGGCTCGGATGAGTAATAAGCTACA
GGACGTGATTCTCATC
back to top