FC931546

Overview
NameFC931546
Unique NameFC931546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9385 contig Ccv1_Contig9385:73..788. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: ATR_CAEEL (Serine/threonine-protein kinase ATR OS=Caenorhabditis elegans GN=atl-1 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.060e-16
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 3
Query:  123 WLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSN 416
            W   R  + +S AVMS++GY+ GLGDRH  NLM+H  +GK +H+DF   F         PE VPFRLT+ ++  M    ++G FR+ CE  ++V R N
Sbjct: 2346 WFASRKLFAKSTAVMSVIGYIFGLGDRHTKNLMVHT-TGKCIHVDFDMIFNKGETLGT-PELVPFRLTQNMINGMGEVALDGEFRTVCEQALRVFREN 2441          
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: PRKDC_CHICK (DNA-dependent protein kinase catalytic subunit OS=Gallus gallus GN=PRKDC PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.261e-16
Identity = 47/136 (34.56%), Postives = 80/136 (58.82%), Query Frame = 3
Query:   78 DLARVLWLKSRTS-EIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRLF 482
            DL R  ++K  TS E +L  R+++  S A+M +  ++LG+GDRH SN M+++ +G ++ IDFG  F ++      PE +PFRLTR  V  M      G   S   + ++  R++ D +++ M+ FV +P ++W+ F
Sbjct: 3887 DLLRRAFVKMSTSPEAFLALRSHFVSSHALMCVSHWILGIGDRHLSNFMINKETGGMVGIDFGHAFGSATQFLPVPELMPFRLTRQFVNLMMPVKEWGLIYSVMVHALRAYRADPDLLISTMDVFVKEPSLDWKNF 4022          
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: PRKDC_DICDI (DNA-dependent protein kinase catalytic subunit OS=Dictyostelium discoideum GN=dnapkcs PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.871e-16
Identity = 41/133 (30.83%), Postives = 70/133 (52.63%), Query Frame = 3
Query:   75 NDLARVLWLKSRTSEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINW 473
            N L   +W  S + E +L  R ++ RSLA  S+  Y++G+GDRH  N ++ +  G+++ IDFG  F  +      PE +PFRLTR     +      G         +  L++ ++ ++  M+ FV +PL++W
Sbjct: 4054 NLLQNGIWSLSSSPESYLFIRNSFARSLASFSVCSYVIGIGDRHLENFLISQRDGRLIGIDFGHAFGTATQFLPIPELMPFRLTRQFTSFLRPLDSVGLLNHNMTYTLTALQNQKEILLTTMDVFVKEPLLDW 4186          
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: PRKDC_XENLA (DNA-dependent protein kinase catalytic subunit OS=Xenopus laevis GN=prkdc PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.973e-16
Identity = 45/134 (33.58%), Postives = 78/134 (58.21%), Query Frame = 3
Query:   78 DLARVLWLK-SRTSEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWR 476
            DL R  ++K S T E +L  R+++ RS A++ +  +++G+GDRH SN M++  +G ++ IDFG  F  +      PE +PFRLTR +V  M      G F S   + ++  RS+   ++  M+ F+ +P ++W+
Sbjct: 3899 DLLRRAFVKMSTTPEAFLSLRSHFARSHALLCVSHWIVGIGDRHLSNFMINMETGGMIGIDFGHAFGTATQFLPVPELMPFRLTRQIVNLMLPMKDSGLFDSVMVHSLRAYRSDPGLLVTTMDVFIKEPSLDWK 4032          
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: PRKDC_CANFA (DNA-dependent protein kinase catalytic subunit OS=Canis familiaris GN=PRKDC PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13
Identity = 44/136 (32.35%), Postives = 73/136 (53.68%), Query Frame = 3
Query:   78 DLARVLWLKSRTSEI-WLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRLF 482
            DL +  +LK  T    +L  R+++  S A+M +  ++LG+GDRH +N M+   +G ++ IDFG  F ++      PE +PFRLTR  +  M      G   S   + ++  RS+ D +   M+ FV +P  +W+ F
Sbjct: 3897 DLLKRAFLKMSTGPAAFLALRSHFASSHALMCISHWILGIGDRHLNNFMVSMETGGLIGIDFGHAFGSATQFLPVPELMPFRLTRQFINLMLPMKEAGVVYSIMVHALRAFRSHSDLLTNTMDVFVKEPSFDWKNF 4032          
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: PRKDC_MOUSE (DNA-dependent protein kinase catalytic subunit OS=Mus musculus GN=Prkdc PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13
Identity = 45/136 (33.09%), Postives = 73/136 (53.68%), Query Frame = 3
Query:   78 DLARVLWLKSRTS-EIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRLF 482
            DL +  ++K  TS E +L  R+++  S A++ +  +LLG+GDRH +N M+   +G ++ IDFG  F ++      PE +PFRLTR  V  M      G   +   + ++  RS    +   ME FV +P  +W+ F
Sbjct: 3881 DLLKRAFVKMSTSPEAFLALRSHFASSHALLCISHWLLGIGDRHLNNFMVAMETGSVIGIDFGHAFGSATQFLPVPELMPFRLTRQFVSLMLPMKETGLMCTVMVHALRAFRSCAGLLTDTMEIFVKEPSFDWKSF 4016          
BLAST of FC931546 vs. ExPASy Swiss-Prot
Match: PRKDC_HUMAN (DNA-dependent protein kinase catalytic subunit OS=Homo sapiens GN=PRKDC PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 42/136 (30.88%), Postives = 74/136 (54.41%), Query Frame = 3
Query:   78 DLARVLWLKSRTS-EIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRLF 482
            DL +  +++  TS E +L  R+++  S A++ +  ++LG+GDRH +N M+   +G ++ IDFG  F ++      PE +PFRLTR  +  M      G   S   + ++  RS+   +   M+ FV +P  +W+ F
Sbjct: 3881 DLLKRAFVRMSTSPEAFLALRSHFASSHALICISHWILGIGDRHLNNFMVAMETGGVIGIDFGHAFGSATQFLPVPELMPFRLTRQFINLMLPMKETGLMYSIMVHALRAFRSDPGLLTNTMDVFVKEPSFDWKNF 4016          
The following BLAST results are available for this feature:
BLAST of FC931546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ATR_CAEEL1.060e-1642.86Serine/threonine-protein kinase ATR OS=Caenorhabdi... [more]
PRKDC_CHICK5.261e-1634.56DNA-dependent protein kinase catalytic subunit OS=... [more]
PRKDC_DICDI6.871e-1630.83DNA-dependent protein kinase catalytic subunit OS=... [more]
PRKDC_XENLA8.973e-1633.58DNA-dependent protein kinase catalytic subunit OS=... [more]
PRKDC_CANFA1.097e-1332.35DNA-dependent protein kinase catalytic subunit OS=... [more]
PRKDC_MOUSE1.433e-1333.09DNA-dependent protein kinase catalytic subunit OS=... [more]
PRKDC_HUMAN7.110e-1330.88DNA-dependent protein kinase catalytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34106C09EF PostHarvP1 Citrus clementina cDNA clone C34106C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931546 ID=FC931546; Name=FC931546; organism=Citrus clementina; type=EST; length=716bp
CACCAGATTATGACCATTTGCCTCTCATAGCCAAAGTGGAAGTTTTTGAA
TATGCTCTACAAAATACTGAAGGGAATGATCTGGCCAGGGTGCTTTGGTT
AAAAAGCCGTACTTCTGAAATATGGCTAGAGAGGAGGACGAACTATACCA
GAAGTTTAGCAGTGATGAGCATGGTTGGATACCTTCTTGGTTTAGGGGAT
CGGCACCCAAGTAATCTTATGCTGCACCGCTATAGTGGGAAAATTTTACA
CATAGATTTTGGGGACTGCTTTGAAGCTTCAATGAACCGGGAGAAGTTCC
CTGAAAAGGTTCCTTTTCGCTTGACTAGAATGCTTGTTAAAGCTATGGAG
GTTAGTGGTATTGAGGGCAACTTCCGTTCAACATGCGAAAATGTGATGCA
AGTTCTGCGCTCAAATAGGGATAGTGTTATGGCTATGATGGAGGCCTTTG
TTCATGATCCTCTCATCAATTGGCGTCTTTTCAATTTTAATGAAGTACCG
CAAATGTCAGTGTTTGCAAATACTCATGTCCCTCCTGTTGTGAATGCCGA
AGAAACTGCTCCAAATAGAGAACTTCCTCAACCACAACGGGGTGCTCGTG
AAAGGGAGCTTCTTCAGGCTGTTAATCAACTTGGTGATGCTAGTGAGGTT
TTGAATGGGCGTGCTGTGGTTGTCATGGCTCGGATGAGTAATAAGCTACA
GGACGTGATTCTCATC
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