FC931551

Overview
NameFC931551
Unique NameFC931551
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length647
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15351 contig Ccv1_Contig15351:1..647. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931551 vs. ExPASy Swiss-Prot
Match: PCKA_MARMM (Phosphoenolpyruvate carboxykinase [ATP] OS=Maricaulis maris (strain MCS10) GN=pckA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.320e-41
Identity = 91/217 (41.94%), Postives = 128/217 (58.99%), Query Frame = 2
Query:    2 DPEHRIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDG-DVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIK-FGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 646
            D +HR+ VR+V+  A+HSLF+ ++   P +EE   F   +FTI N   F  +   H   S T I ++ AR+ ++I GT YAGE KK +F++++YL+P + ++ +H   N   +G D                 D +R L+GDDEH WS NG+ N EGGCYAK I LS E EP+I    K +GTVLEN+V D  TR +D  D S+ EN+R AYP+  I
Sbjct:  114 DLDHRLPVRVVNELAWHSLFIRHLLRVPAAEEYAGFAA-EFTIINLPSFKADPARHGCRSETVIGVDFARRIVLIGGTSYAGETKKSVFTILNYLLPAKGVMPMHCSVNSNPNGEDATIFFGLSGTGKTTLSADASRTLVGDDEHGWSPNGLFNFEGGCYAKMIRLSAEAEPEIHATTKMWGTVLENVVMDPQTRVLDLDDDSLAENSRGAYPLSAI 329          
BLAST of FC931551 vs. ExPASy Swiss-Prot
Match: PCKA_HAMD5 (Phosphoenolpyruvate carboxykinase [ATP] OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=pckA PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.751e-41
Identity = 92/212 (43.40%), Postives = 124/212 (58.49%), Query Frame = 2
Query:   14 RIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHY-MTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 646
            R++VR ++  A+ + F+ NM IRP+ EEL  F  PDF + N  +     +    + S   +  NL  +  +I GT Y GEMKKGLFS+M+Y +P ++I ++H   N+G  GDVA               D  R LIGDDEH W D GV N EGGCYAK I+LS   EPDI++AIK   +LEN+V       VD+ D S T+NTR +YPI +I
Sbjct:  131 RLQVRFITEVAWQAHFVKNMFIRPSEEELTRFH-PDFVVMNGAKCTNPNWKEQGLHSKNFVAFNLTERIQLIGGTWYGGEMKKGLFSMMNYFLPLKRIAAMHCSANVGVKGDVAVFFGLSGTGKTTLSADPKRQLIGDDEHGWDDEGVFNFEGGCYAKTIELSESDEPDIYHAIKRDALLENVVVLPDA-TVDFNDSSKTQNTRVSYPIYHI 340          
BLAST of FC931551 vs. ExPASy Swiss-Prot
Match: PCKA_GRAFK (Phosphoenolpyruvate carboxykinase [ATP] OS=Gramella forsetii (strain KT0803) GN=pckA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.172e-39
Identity = 85/217 (39.17%), Postives = 131/217 (60.37%), Query Frame = 2
Query:    2 DPEHRIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQ-ILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWS-DNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 646
            D ++R+ +R+++   + +LF  NM +RP ++EL++F   D+ + NA  F  N             +N ++K  +I GT Y GE+KKG+FS +++++P  +  L +H   N+G+DGD A               D  R LIGDDEH W+ +N + N EGGCYAK I+LS E EPDI+ AIK G +LEN+  D +  +VD+ D ++T+NTR +YPI +I
Sbjct:  117 DEKYRLNIRVLNEYPWSNLFAFNMFLRPENQELDNF-KEDWLVLNAPGFKANPEVDGTRQENFAILNFSKKIALIGGTGYTGEIKKGIFSALNFVLPVYENTLPMHCSANVGEDGDTAIFFGLSGTGKTTLSADPERKLIGDDEHGWTKENTIFNFEGGCYAKVINLSEENEPDIYKAIKPGAILENVALDAN-GDVDFEDVTITQNTRVSYPINHI 331          
BLAST of FC931551 vs. ExPASy Swiss-Prot
Match: PCKA_BAUCH (Phosphoenolpyruvate carboxykinase [ATP] OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=pckA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.834e-36
Identity = 84/212 (39.62%), Postives = 123/212 (58.02%), Query Frame = 2
Query:   14 RIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHY-MTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 646
            R++VR V+  A+ + F+ NM I+P + +L  F  P+F + N  +     +    M S   I +NL     +I GT Y GEMKKGLF++M+Y +P + I S+H   N+G + DVA               D NR LIGDDEH W ++G+ N+EGGCYAK I+L  E EP+I+ AI+   +LEN++       V+Y D S T+N R +YP+ +I
Sbjct:  130 RLRVRFVTEVAWQAHFVKNMFIQPDAIDLISF-EPEFIVLNGAKCTNPNWREQNMHSENFIALNLTEGMQLIAGTWYGGEMKKGLFTVMNYHLPLKGIASMHCSANVGINKDVALFFGLSGTGKTTLSHDTNRALIGDDEHGWDNDGIFNLEGGCYAKTINLKPELEPEIFQAIRCNALLENVMV-RADGSVNYHDNSKTDNARVSYPLNHI 339          
The following BLAST results are available for this feature:
BLAST of FC931551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
PCKA_MARMM2.320e-4141.94Phosphoenolpyruvate carboxykinase [ATP] OS=Maricau... [more]
PCKA_HAMD56.751e-4143.40Phosphoenolpyruvate carboxykinase [ATP] OS=Hamilto... [more]
PCKA_GRAFK2.172e-3939.17Phosphoenolpyruvate carboxykinase [ATP] OS=Gramell... [more]
PCKA_BAUCH3.834e-3639.62Phosphoenolpyruvate carboxykinase [ATP] OS=Baumann... [more]

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Properties
Property NameValue
Genbank descriptionC34106D04EF PostHarvP1 Citrus clementina cDNA clone C34106D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931551 ID=FC931551; Name=FC931551; organism=Citrus clementina; type=EST; length=647bp
GGACCCAGAACACCGGATCAAAGTCCGAATTGTTTCTGCCAGAGCTTACC
ATTCCTTGTTCATGCACAACATGTGCATCCGACCCACGTCAGAAGAATTA
GAAGATTTTGGTACTCCGGACTTCACAATATACAATGCTGGGCAGTTTCC
TTGCAACCGTTACACCCACTATATGACTTCCTCTACTAGCATTGACATAA
ATCTTGCTAGGAAAGAAATGGTCATTCTTGGCACCCAGTATGCCGGAGAA
ATGAAGAAAGGTCTATTCAGCTTAATGCATTACCTAATGCCTAAACGTCA
AATCCTCTCCCTCCACTCTGGCTGCAATATGGGAAAAGATGGGGATGTTG
CCCTTTTCTTCGGACTATCCGGTACTGGGAAGACAACTCTGTCTACTGAT
CATAACCGGTACTTAATTGGAGATGATGAGCACTGCTGGAGTGATAATGG
AGTATCAAACATTGAAGGCGGGTGCTATGCCAAATGCATTGATCTTTCAA
GGGAGAAGGAGCCTGATATCTGGAATGCCATCAAATTCGGGACTGTGCTA
GAAAACATTGTGTTTGATGAGCATACACGAGAAGTGGACTACTTGGACAA
ATCTGTCACGGAGAACACTCGTGCCGCGTATCCCATAGAGTATATCC
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