FC931588

Overview
NameFC931588
Unique NameFC931588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931588_ssr25 microsatellite FC931588_ssr25:25..38. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931588_ssr124 microsatellite FC931588_ssr124:124..138. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931588_ssr185 microsatellite FC931588_ssr185:185..196. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10238 contig Ccv1_Contig10238:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL25_ARATH (Probable germin-like protein subfamily 2 member 5 OS=Arabidopsis thaliana GN=At5g26700 PE=2 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 1.941e-48
Identity = 92/149 (61.74%), Postives = 115/149 (77.18%), Query Frame = 1
Query:  187 AAADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIA 627
            A A  EMLQDVCVADL++ +KVNG+ CK     +  DF+   LA  AATN + GS VT ANV+ +PGLNTLG+S++RIDYAP G+NPPH HPRA+EI+FVLEGQL VGF TTA  L++K++ KG+ F FP+GL+HFQKN  N PASV+A
Sbjct:   18 AMASAEMLQDVCVADLSNAVKVNGYTCKDSTQITPEDFYFKGLANIAATNTSTGSVVTGANVEKLPGLNTLGLSMSRIDYAPNGLNPPHVHPRASEIIFVLEGQLYVGFVTTAGKLIAKNLNKGDVFTFPKGLIHFQKNIANSPASVLA 166          

HSP 2 Score: 23.483 bits (49), Expect = 1.941e-48
Identity = 9/19 (47.37%), Postives = 14/19 (73.68%), Query Frame = 3
Query:  633 NSQLQGTQNIALTLFASTP 689
            +SQL GTQ++  +LF + P
Sbjct:  169 DSQLPGTQSLVASLFGALP 187          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL23_ARATH (Germin-like protein subfamily 2 member 3 OS=Arabidopsis thaliana GN=GLP8 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.526e-46
Identity = 91/150 (60.67%), Postives = 114/150 (76.00%), Query Frame = 1
Query:  187 AAADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAAT-NNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIA 627
            A AD  MLQD CVADL++ +KVNG+PCK  A  +  DF+   LA  AAT N++ GS VT ANV+ +PGLNTLGVS++RIDYAPGG+NPPH HPRA+E +FVLEG+L VGF TT   L+SK + KG+ FVFP+ L+HFQ+N    PASV+A
Sbjct:   20 ALADTNMLQDFCVADLSNGLKVNGYPCKDPAKVTPEDFYFIGLATAAATANSSMGSAVTGANVEKVPGLNTLGVSISRIDYAPGGLNPPHLHPRASEAIFVLEGRLFVGFLTTTGKLISKHVNKGDVFVFPKALLHFQQNPNKAPASVLA 169          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL82_ORYSJ (Germin-like protein 8-2 OS=Oryza sativa subsp. japonica GN=GER3 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.837e-41
Identity = 93/154 (60.39%), Postives = 109/154 (70.78%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFF-SDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGL 633
            A+DP  LQD CVADL SP++VNGF CK   N S  DFF +  L KP  TNN  GS VT  NV  +PGLNTLG+S+AR+D+AP G+NPPHTHPRATEI  VLEG L VGF T+   N L+SK + KG+ FVFP GL+HFQ N N + PA  IA L
Sbjct:   24 ASDPSPLQDFCVADLNSPVRVNGFVCKNPMNASADDFFKAAMLDKPRDTNNKVGSNVTLVNVLQLPGLNTLGISIARLDFAPLGLNPPHTHPRATEIFTVLEGTLYVGFVTSNPDNRLLSKVLNKGDVFVFPEGLIHFQFNPNPHKPAVAIAAL 177          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL14_ORYSJ (Germin-like protein 1-4 OS=Oryza sativa subsp. japonica GN=Os01g0952100 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 7.550e-41
Identity = 88/159 (55.35%), Postives = 113/159 (71.07%), Query Frame = 1
Query:  190 AADPEMLQDVCVAD---LTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAA--TNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAP-GGINPPHTHPRATEIVFVLEGQLDVGFFT-----TANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIA 627
            A DP+MLQD+CVAD   L  P++VNGFPCK  AN +  DFF   L KPA   + N  GS VTAA V+ IPGLNTLGVS+AR+DYAP GG NPPH+HPRATEI+FV +G L+VGF        ++ L+++ + KG  FVFPRGL+H++++ G  PA  I+
Sbjct:   27 AGDPDMLQDICVADYKSLQGPLRVNGFPCKPEANVTAEDFFFPGLGKPADVYSGNPMGSAVTAATVERIPGLNTLGVSMARVDYAPWGGANPPHSHPRATEILFVADGLLEVGFVVATAAPASSRLITRVVPKGGVFVFPRGLLHYERSVGEKPAVAIS 185          

HSP 2 Score: 23.0978 bits (48), Expect = 7.550e-41
Identity = 12/28 (42.86%), Postives = 14/28 (50.00%), Query Frame = 3
Query:  609 PCFCYCWLNSQLQGTQNIALTLFASTPP 692
            P       +SQL GTQ  A  LF S+ P
Sbjct:  180 PAVAISAFDSQLPGTQAAADALFGSSSP 207          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL84_ORYSJ (Germin-like protein 8-4 OS=Oryza sativa subsp. japonica GN=GER1 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.838e-40
Identity = 85/147 (57.82%), Postives = 102/147 (69.39%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSD-KLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT-ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPA 615
            A DP  LQD CVAD+ SP++VNGFPCK     +  DFF+  K   P +T N  GS VT  NV   PGLNTLG+SLARIDYAP G+NPPH HPRATE++ VLEG L VGF T+  N L SK + KG+ FVFP+ ++HFQ N + N PA
Sbjct:   23 AFDPSPLQDFCVADMKSPVRVNGFPCKNPMEVNSDDFFNAAKFDMPRSTMNKVGSNVTNLNVLNFPGLNTLGISLARIDYAPLGVNPPHIHPRATELLTVLEGTLYVGFVTSNPNRLFSKVVHKGDTFVFPKAMIHFQMNLDHNKPA 169          

HSP 2 Score: 27.335 bits (59), Expect = 2.838e-40
Identity = 13/31 (41.94%), Postives = 16/31 (51.61%), Query Frame = 3
Query:  609 PCFCYCWLNSQLQGTQNIALTLFASTPPVAD 701
            P      LNSQ  G   IA  +F S PP++D
Sbjct:  168 PAVAQSSLNSQNPGVITIASAVFGSKPPISD 198          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GLT1_ARATH (Germin-like protein subfamily T member 1 OS=Arabidopsis thaliana GN=GLP1 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 2.357e-39
Identity = 79/145 (54.48%), Postives = 97/145 (66.90%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVI 624
            ++D + LQD CV DL +   +NGFPCK+  S  DFF   L  P  T+N  G TV  ANV T PGLNTLG+S+  ++ APGG+NPPH HPRATE+  V+EG + VGF +T N L SK +  GE FV PRGLVHFQ N G V A +I
Sbjct:   27 SSDSDPLQDFCVGDLKASASINGFPCKSAVSASDFFYSGLGGPLDTSNPNGVTVAPANVLTFPGLNTLGISMNNVELAPGGVNPPHLHPRATEVGTVIEGSVFVGFLSTNNTLFSKVLNAGEAFVIPRGLVHFQWNVGQVKARMI 171          

HSP 2 Score: 21.9422 bits (45), Expect = 2.357e-39
Identity = 10/21 (47.62%), Postives = 12/21 (57.14%), Query Frame = 3
Query:  633 NSQLQGTQNIALTLFASTPPV 695
            NSQL G   +  TLF S P +
Sbjct:  175 NSQLPGAVVLPSTLFGSKPEI 195          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL22_ORYSJ (Putative germin-like protein 2-2 OS=Oryza sativa subsp. japonica GN=Os02g0491700 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.468e-39
Identity = 87/152 (57.24%), Postives = 100/152 (65.79%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGL 633
            A+DP +LQD CV D  S ++VNGFPCK   +    DFF   L     T N  GS VT  NV  IPGLNT+GVSL RIDYAP G+NPPHTHPRATEI  VLEG L VGF  +   N L +K + KG+ FVFP+GLVHFQ NNG   A  +A L
Sbjct:   28 ASDPGLLQDFCVVDKMSQVRVNGFPCKDAKDVVAGDFFFSGLHMAGNTTNKQGSNVTTVNVAQIPGLNTMGVSLVRIDYAPNGLNPPHTHPRATEIPTVLEGSLYVGFVISNPENKLFTKVLNKGDVFVFPQGLVHFQFNNGTNNAVALAAL 179          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GLT2_ARATH (Germin-like protein subfamily T member 2 OS=Arabidopsis thaliana GN=At1g18980 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 4.002e-39
Identity = 78/145 (53.79%), Postives = 98/145 (67.59%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVI 624
            ++D + LQD CV DL +   +NGFPCK++ S  DFF   L  P  T+   G  V+ ANV T PGLNTLG+S+  +++APGG+NPPH+HPRATE   V+EG + VGF TT N L SK +  GE FV PRGLVHFQ N G V A +I
Sbjct:   27 SSDSDPLQDFCVGDLKASPSINGFPCKSSVSASDFFFSGLGGPLNTSTPNGVAVSPANVLTFPGLNTLGLSMNNVEFAPGGVNPPHSHPRATEAGVVIEGSVFVGFLTTNNTLFSKVLNAGEMFVVPRGLVHFQWNVGKVKARLI 171          

HSP 2 Score: 23.0978 bits (48), Expect = 4.002e-39
Identity = 10/21 (47.62%), Postives = 13/21 (61.90%), Query Frame = 3
Query:  633 NSQLQGTQNIALTLFASTPPV 695
            NSQL G+  +  TLF S P +
Sbjct:  175 NSQLPGSAVLPSTLFGSNPTI 195          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL83_ORYSJ (Germin-like protein 8-3 OS=Oryza sativa subsp. japonica GN=GER2 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.009e-38
Identity = 86/147 (58.50%), Postives = 102/147 (69.39%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSD-KLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT-ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPA 615
            A DP  LQD CVAD+ SP++VNGFPCK   N +  DFF+  K   P  T N  GS VT  NV   PGLNTLG+SLARIDYAP G+NPPH HPRATE++ VLEG L VGF T+  N L SK + KG+ FVFP+ ++HFQ N + N PA
Sbjct:   23 AFDPSPLQDFCVADMASPVRVNGFPCKNPMNVTSDDFFNAAKFDMPRNTMNKVGSNVTNLNVINFPGLNTLGISLARIDYAPMGVNPPHVHPRATELLTVLEGTLYVGFVTSNPNRLFSKVVHKGDVFVFPKAMIHFQMNLDHNKPA 169          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL23_ORYSJ (Putative germin-like protein 2-3 OS=Oryza sativa subsp. japonica GN=Os02g0491800 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.009e-38
Identity = 87/152 (57.24%), Postives = 101/152 (66.45%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGL 633
            A+DP  LQD+CVAD  S ++VNG  CK   + +  DFF   L     T N  GS VTA NV  +PGLNTLG+SLARIDYA  G+NPPHTHPRATEI+ VLEG L VGF T+   N L +K I KG+ FVFP+GLVHFQ N G   A  I  L
Sbjct:   28 ASDPSHLQDLCVADKASTVRVNGVACKDGEDVAAEDFFFSGLHMAGNTTNKQGSAVTAVNVAQVPGLNTLGISLARIDYALHGLNPPHTHPRATEILTVLEGSLYVGFVTSNPENKLFTKVINKGDVFVFPKGLVHFQFNYGTTDAVAIVAL 179          
The following BLAST results are available for this feature:
BLAST of FC931588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GL25_ARATH1.941e-4861.74Probable germin-like protein subfamily 2 member 5 ... [more]
GL23_ARATH6.526e-4660.67Germin-like protein subfamily 2 member 3 OS=Arabid... [more]
GL82_ORYSJ2.837e-4160.39Germin-like protein 8-2 OS=Oryza sativa subsp. jap... [more]
GL14_ORYSJ7.550e-4155.35Germin-like protein 1-4 OS=Oryza sativa subsp. jap... [more]
GL84_ORYSJ2.838e-4057.82Germin-like protein 8-4 OS=Oryza sativa subsp. jap... [more]
GLT1_ARATH2.357e-3954.48Germin-like protein subfamily T member 1 OS=Arabid... [more]
GL22_ORYSJ3.468e-3957.24Putative germin-like protein 2-2 OS=Oryza sativa s... [more]
GLT2_ARATH4.002e-3953.79Germin-like protein subfamily T member 2 OS=Arabid... [more]
GL83_ORYSJ1.009e-3858.50Germin-like protein 8-3 OS=Oryza sativa subsp. jap... [more]
GL23_ORYSJ1.009e-3857.24Putative germin-like protein 2-3 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC34106G09EF PostHarvP1 Citrus clementina cDNA clone C34106G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931588 ID=FC931588; Name=FC931588; organism=Citrus clementina; type=EST; length=723bp
GGTCAACAAATCAACACCAACTTTTCTCTCTCTCTCTCTTTCTCCATCTC
TATCTTTTCTTCTTTCTTTATCTTCGCCTGCAGCAATAACAAGATCATAA
TTGAACTTACTTTTGTAACCATGGCTGCTGCTGCTGCTGGTGCTTTGACA
CTTTTTGTTGTCACTGTTGCTGTGATCTTGAACACTGCTGCTGCTGATCC
CGAAATGCTTCAAGATGTTTGTGTGGCAGACCTCACTTCCCCTATTAAAG
TCAATGGGTTCCCCTGCAAAGCAAACTTTTCAGAGATGGACTTTTTCTCA
GACAAATTAGCAAAGCCAGCAGCCACAAACAACACGTTTGGTTCAACAGT
AACAGCAGCCAATGTCCAAACAATCCCAGGCCTAAATACTCTTGGTGTCT
CACTCGCACGCATTGACTATGCCCCCGGCGGCATAAACCCGCCGCACACG
CACCCCCGTGCCACCGAGATCGTCTTTGTCCTCGAGGGTCAACTCGACGT
AGGCTTCTTCACTACTGCCAACGTTTTGGTATCAAAATCCATCAAAAAGG
GTGAAAACTTCGTGTTTCCAAGAGGGTTGGTGCATTTCCAGAAGAACAAT
GGAAATGTCCCTGCTTCTGTTATTGCTGGCTTAATAGCCAGCTGCAGGGG
ACTCAGAACATTGCTCTTACATTGTTTGCATCTACGCCGCCAGTGGCGGA
TATGTATGACTAGACTTTCAGAT
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