FC931588

Overview
NameFC931588
Unique NameFC931588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931588_ssr25 microsatellite FC931588_ssr25:25..38. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931588_ssr124 microsatellite FC931588_ssr124:124..138. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931588_ssr185 microsatellite FC931588_ssr185:185..196. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10238 contig Ccv1_Contig10238:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL85_ORYSJ (Germin-like protein 8-5 OS=Oryza sativa subsp. japonica GN=Os08g0189400 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.008e-38
Identity = 91/155 (58.71%), Postives = 107/155 (69.03%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMD----FFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGL 633
            A+DP  LQD CVAD+ SP++VNGF C  N  E++    F + KL  P  TN   GS VT  NV  IPGLNTLG+S+ARIDYAP G NPPHTHPRATEI+ VLEG L VGF T+   N L SK + KG+ FVFP+GL+HFQ N N + PA  IA L
Sbjct:   22 ASDPSPLQDFCVADMHSPVRVNGFAC-LNPMEVNADHFFKAAKLDTPRKTNKV-GSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPQGLIHFQFNPNPHQPAVAIAAL 174          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL21_ORYSJ (Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica GN=Os02g0491600 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.116e-37
Identity = 84/155 (54.19%), Postives = 100/155 (64.52%), Query Frame = 1
Query:  181 NTAAADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGL 633
            N  A+DP  LQD CVAD  S + VNGF CK  A  +  DFF   L     T+N  GS VT  NV  I GLNTLG+SLAR+DYAP G+NPPH HPRATEI+ +LEG L VGF T+   N L +K + KG+ FVFP+GL+HFQ N G      +A L
Sbjct:   18 NAFASDPSQLQDFCVADKMSQVLVNGFACKDPAAITVEDFFFSGLHMAGNTSNRQGSAVTGVNVAQISGLNTLGISLARVDYAPYGLNPPHIHPRATEILTILEGSLYVGFVTSNPENKLFTKVLNKGDVFVFPQGLIHFQFNYGTKDVIALAAL 172          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL812_ORYSJ (Germin-like protein 8-12 OS=Oryza sativa subsp. japonica GN=Os08g0231400 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.457e-37
Identity = 84/155 (54.19%), Postives = 103/155 (66.45%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSD-KLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT-ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGLIAS 642
            A DP  LQD CVAD+ SP++VNGF CK   + S  DFF+  K   P  T N  GS VT  NV   PGLNTLG+SLARIDYAP G+NPPH HPRATE++ VLEG L VGF T+  N L SK + KG+ FVFP+ ++HFQ N  +   +V    ++S
Sbjct:   23 AYDPSPLQDFCVADMNSPVRVNGFACKNPMDVSSEDFFNAAKFDMPRNTFNKLGSNVTNLNVMEFPGLNTLGISLARIDYAPMGVNPPHIHPRATELLTVLEGTLYVGFVTSNPNKLFSKVVCKGDVFVFPKAMIHFQMNLDHDKPAVAQSALSS 177          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL12_ORYSJ (Germin-like protein 1-2 OS=Oryza sativa subsp. japonica GN=Os01g0705100 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.457e-37
Identity = 80/149 (53.69%), Postives = 100/149 (67.11%), Query Frame = 1
Query:  187 AAADPEMLQDVCVADLTSPIKVNGFPCKANFSEM--DFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIA 627
            A AD   LQD+CVADL +   V+GFPCK   S +  DFF D + +  +T+N FG   T A V   PGLNTLG+S+ R D APGG+NPPH+HPRA+E+V VL G++ VGF T AN L SK +++ E FV PRGL HFQ N G   AS +A
Sbjct:   27 AVADSPPLQDICVADLRAATAVDGFPCKPTASVVSDDFFCDAIVQAPSTSNPFGVNSTRATVSAFPGLNTLGLSITRTDLAPGGLNPPHSHPRASELVLVLSGEVMVGFTTAANRLFSKVVREKELFVVPRGLQHFQLNVGAGNASFVA 175          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL41_ORYSJ (Germin-like protein 4-1 OS=Oryza sativa subsp. japonica GN=Os04g0617900 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.903e-37
Identity = 86/156 (55.13%), Postives = 101/156 (64.74%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDK-LAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT-----ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGL 633
            A+DP  LQD CVAD  S + VNGF CK     +  DFF  K L  P  T N  GS VT   V  +PGLNTLG+S ARID+AP G NPPHTHPRATEI+ VL+G L VGF T+      N+  +K +  G+ FVFP+GL+HFQ NNG VPA  IA L
Sbjct:   27 ASDPSQLQDFCVADKLSAVFVNGFVCKNPKQVTANDFFLPKALGVPGNTVNAQGSAVTPVTVNELPGLNTLGISFARIDFAPNGQNPPHTHPRATEILTVLQGTLLVGFVTSNQPGGGNLQFTKLLGPGDVFVFPQGLIHFQLNNGAVPAVAIAAL 182          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL86_ORYSJ (Germin-like protein 8-6 OS=Oryza sativa subsp. japonica GN=Os08g0189500 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.485e-37
Identity = 88/155 (56.77%), Postives = 101/155 (65.16%), Query Frame = 1
Query:  184 TAAADPEMLQDVCVADLTSPIKVNGFPC--KANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGL 633
            T A+DP  LQD CVAD  SP+ VNGF C    + +   FF   +       N  GS VT  NV  IPGLNTLG+S+ARIDYAP G NPPHTHPRATEI+ VLEG L VGF T+   N L SK +KKG+ FVFP GL+HFQ N N + PA  IA L
Sbjct:   21 TIASDPSPLQDFCVADEHSPVLVNGFACLDPKHVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLKKGDVFVFPVGLIHFQFNPNPHQPAVAIAAL 175          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL81_ORYSJ (Putative germin-like protein 8-1 OS=Oryza sativa subsp. japonica GN=Os08g0188900 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.485e-37
Identity = 85/142 (59.86%), Postives = 99/142 (69.72%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFF-SDKLAKPAATN-NTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKN 597
            AA+P  LQD CVADL S ++VNGF CK   N S  DFF +  L KP  T  N  GS +T  NV  IPGLNTLG+S+ R+DYAP G+NPPHTHPRATEI  VLEG L VGF T+   N L SK + KG+ FVFP+GL+HFQ N
Sbjct:   23 AAEPSPLQDFCVADLNSAVRVNGFACKNPTNVSADDFFKAAMLDKPRDTAVNKVGSNITLINVMEIPGLNTLGISIVRVDYAPLGLNPPHTHPRATEIFTVLEGTLYVGFVTSNPDNKLFSKVLNKGDVFVFPKGLIHFQFN 164          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL123_ORYSJ (Putative germin-like protein 12-3 OS=Oryza sativa subsp. japonica GN=Os12g0154900 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.246e-37
Identity = 87/158 (55.06%), Postives = 108/158 (68.35%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFF-SDKLAKPA-ATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT-----ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGL 633
            A+DP  LQD+CVAD  SP++VNGFPCK   + S  DFF +  L KP   T +  GS VT  NV  + GLNTLG+S+ARIDYAP G NPPHTHPRATEI+ V+EG L VGF T+      N L +K++ KG+ FVFP GL+HFQ N + + PA+ I  L
Sbjct:   22 ASDPSPLQDLCVADKNSPVRVNGFPCKDAKDVSVDDFFLAANLDKPMDITKSKAGSNVTLINVMKLAGLNTLGISMARIDYAPKGQNPPHTHPRATEILSVIEGSLYVGFVTSNQANGENKLFTKTLNKGDVFVFPEGLIHFQFNPSYDKPAAAIVAL 179          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL810_ORYSJ (Germin-like protein 8-10 OS=Oryza sativa subsp. japonica GN=GLP2 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.240e-37
Identity = 87/153 (56.86%), Postives = 100/153 (65.36%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPC-KANFSEMD-FFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGL 633
            A+DP  LQD CVAD+ SP+ VNGF C    +   D FF   +       N  GS VT  NV  IPGLNTLG+S+ARIDYAP G NPPHTHPRATEI+ VLEG L VGF T+   N L SK + KG+ FVFP GL+HFQ N N + PA  IA L
Sbjct:   22 ASDPSPLQDFCVADMHSPVLVNGFACLDPKYVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAAL 174          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL122_ORYSJ (Germin-like protein 12-2 OS=Oryza sativa subsp. japonica GN=Os12g0154800 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.445e-37
Identity = 88/158 (55.70%), Postives = 107/158 (67.72%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFF-SDKLAKPA-ATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT-----ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGL 633
            A+DP  LQD CVAD  SP+ VNGFPCK   + +  DFF +  L KP   T +  GS VT  NV  + GLNTLG+S+ARIDYAP G NPPHTHPRATEI+ VLEG L VGF T+      N L +K++ KG+ FVFP+GL+HFQ N + + PA  IA L
Sbjct:   22 ASDPSPLQDFCVADRNSPVHVNGFPCKDAKDVNVDDFFLAANLDKPMDTTKSKAGSNVTLINVMKLAGLNTLGISMARIDYAPKGQNPPHTHPRATEILTVLEGTLYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAAL 179          
The following BLAST results are available for this feature:
BLAST of FC931588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GL85_ORYSJ5.008e-3858.71Germin-like protein 8-5 OS=Oryza sativa subsp. jap... [more]
GL21_ORYSJ1.116e-3754.19Putative germin-like protein 2-1 OS=Oryza sativa s... [more]
GL812_ORYSJ1.457e-3754.19Germin-like protein 8-12 OS=Oryza sativa subsp. ja... [more]
GL12_ORYSJ1.457e-3753.69Germin-like protein 1-2 OS=Oryza sativa subsp. jap... [more]
GL41_ORYSJ1.903e-3755.13Germin-like protein 4-1 OS=Oryza sativa subsp. jap... [more]
GL86_ORYSJ2.485e-3756.77Germin-like protein 8-6 OS=Oryza sativa subsp. jap... [more]
GL81_ORYSJ2.485e-3759.86Putative germin-like protein 8-1 OS=Oryza sativa s... [more]
GL123_ORYSJ3.246e-3755.06Putative germin-like protein 12-3 OS=Oryza sativa ... [more]
GL810_ORYSJ4.240e-3756.86Germin-like protein 8-10 OS=Oryza sativa subsp. ja... [more]
GL122_ORYSJ9.445e-3755.70Germin-like protein 12-2 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionC34106G09EF PostHarvP1 Citrus clementina cDNA clone C34106G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931588 ID=FC931588; Name=FC931588; organism=Citrus clementina; type=EST; length=723bp
GGTCAACAAATCAACACCAACTTTTCTCTCTCTCTCTCTTTCTCCATCTC
TATCTTTTCTTCTTTCTTTATCTTCGCCTGCAGCAATAACAAGATCATAA
TTGAACTTACTTTTGTAACCATGGCTGCTGCTGCTGCTGGTGCTTTGACA
CTTTTTGTTGTCACTGTTGCTGTGATCTTGAACACTGCTGCTGCTGATCC
CGAAATGCTTCAAGATGTTTGTGTGGCAGACCTCACTTCCCCTATTAAAG
TCAATGGGTTCCCCTGCAAAGCAAACTTTTCAGAGATGGACTTTTTCTCA
GACAAATTAGCAAAGCCAGCAGCCACAAACAACACGTTTGGTTCAACAGT
AACAGCAGCCAATGTCCAAACAATCCCAGGCCTAAATACTCTTGGTGTCT
CACTCGCACGCATTGACTATGCCCCCGGCGGCATAAACCCGCCGCACACG
CACCCCCGTGCCACCGAGATCGTCTTTGTCCTCGAGGGTCAACTCGACGT
AGGCTTCTTCACTACTGCCAACGTTTTGGTATCAAAATCCATCAAAAAGG
GTGAAAACTTCGTGTTTCCAAGAGGGTTGGTGCATTTCCAGAAGAACAAT
GGAAATGTCCCTGCTTCTGTTATTGCTGGCTTAATAGCCAGCTGCAGGGG
ACTCAGAACATTGCTCTTACATTGTTTGCATCTACGCCGCCAGTGGCGGA
TATGTATGACTAGACTTTCAGAT
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