FC931588

Overview
NameFC931588
Unique NameFC931588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931588_ssr25 microsatellite FC931588_ssr25:25..38. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931588_ssr124 microsatellite FC931588_ssr124:124..138. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931588_ssr185 microsatellite FC931588_ssr185:185..196. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10238 contig Ccv1_Contig10238:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL88_ORYSJ (Germin-like protein 8-8 OS=Oryza sativa subsp. japonica GN=Os08g0189700 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.611e-36
Identity = 89/154 (57.79%), Postives = 102/154 (66.23%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPC---KANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGL 633
            A+DP  LQD CVAD  SP+ VNGF C   K   ++  F +  L  P  TN   GS VT  NV  IPGLNTLG+S+ARIDYAP G NPPHTHPRATEI+ VLEG L VGF T+   N L SK + KG+ FVFP GL+HFQ N N + PA  IA L
Sbjct:   22 ASDPSPLQDFCVADKHSPVLVNGFACLDPKYVTADHFFKAAMLDTPRKTNKV-GSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAAL 174          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL89_ORYSJ (Germin-like protein 8-9 OS=Oryza sativa subsp. japonica GN=Os08g0189850 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.104e-36
Identity = 89/154 (57.79%), Postives = 102/154 (66.23%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPC---KANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGL 633
            A+DP  LQD CVAD  SP+ VNGF C   K   ++  F +  L  P  TN   GS VT  NV  IPGLNTLG+S+ARIDYAP G NPPHTHPRATEI+ VLEG L VGF T+   N L SK + KG+ FVFP GL+HFQ N N + PA  IA L
Sbjct:   22 ASDPSPLQDFCVADKHSPVLVNGFACLDPKYVTADHFFKAAMLDTPRKTNKV-GSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLHVGFVTSNPNNTLFSKVLNKGDVFVFPVGLIHFQFNPNPHQPAVAIAAL 174          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL87_ORYSJ (Germin-like protein 8-7 OS=Oryza sativa subsp. japonica GN=GER6 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.104e-36
Identity = 86/153 (56.21%), Postives = 99/153 (64.71%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPC-KANFSEMD-FFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGL 633
            A+DP  LQD CVAD  SP+ VNGF C    +   D FF   +       N  GS VT  NV  IPGLNTLG+S+ARIDYAP G NPPHTHPRATEI+ VLEG L VGF T+   N L SK + KG+ FVFP GL+HFQ N N + PA  +A L
Sbjct:   23 ASDPSPLQDFCVADKHSPVLVNGFACLDPKYVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVALAAL 175          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL121_ORYSJ (Germin-like protein 12-1 OS=Oryza sativa subsp. japonica GN=Os12g0154700 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.104e-36
Identity = 87/158 (55.06%), Postives = 106/158 (67.09%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSD-KLAKPA-ATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT-----ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGL 633
            A DP  LQD CVAD  SP++VNGFPCK   + +  DFF +  L KP   T +  GS VT  NV  + GLNTLG+S+ARIDYAP G NPPHTHPRATEI+ V EG L VGF T+      N L +K++ KG+ FVFP+GL+HFQ N + + PA  IA L
Sbjct:   22 AFDPSPLQDFCVADRNSPVRVNGFPCKDAKDVNVDDFFLEANLDKPMDTTKSKAGSNVTLINVMKLTGLNTLGISMARIDYAPKGQNPPHTHPRATEILTVFEGTLYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAAL 179          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL124_ORYSJ (Putative germin-like protein 12-4 OS=Oryza sativa subsp. japonica GN=Os12g0155000 PE=3 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 6.122e-36
Identity = 87/158 (55.06%), Postives = 106/158 (67.09%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFF-SDKLAKPA-ATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT-----ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGL 633
            A+DP  LQD CVAD  SP++VNG PCK   + S  DFF +  L KP   T +  GS VT  NV  + GLNTL +S+ARIDYAP G NPPHTHPRATEI+ VLEG L VGF T+      N L +K++ KG+ FVFP+GL+HFQ N + + PA  IA L
Sbjct:   22 ASDPSPLQDFCVADKHSPVRVNGLPCKDAKDVSVDDFFLAANLDKPMDTTKSKAGSNVTLINVMKLAGLNTLSISMARIDYAPKGQNPPHTHPRATEILTVLEGSLYVGFVTSNQANRENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAAL 179          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL811_ORYSJ (Germin-like protein 8-11 OS=Oryza sativa subsp. japonica GN=Os08g0190100 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.995e-36
Identity = 85/153 (55.56%), Postives = 98/153 (64.05%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPC--KANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGL 633
            A+DP  LQD CVAD+ SP+ VNGF C    + +   FF   +       N  GS VT  NV  IPGLNTLG+S+ARIDYAP G NPPHTHPRATEI+ VLEG L VGF T+   N   SK + KG+ FVFP GL+HFQ N N   PA  IA L
Sbjct:   22 ASDPSPLQDFCVADMHSPVLVNGFACLNPKDVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNPDNKFFSKVLNKGDVFVFPVGLIHFQFNPNPYKPAVAIAAL 174          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL38_ORYSJ (Germin-like protein 3-8 OS=Oryza sativa subsp. japonica GN=Os03g0804700 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.104e-35
Identity = 78/158 (49.37%), Postives = 101/158 (63.92%), Query Frame = 1
Query:  181 NTAAADPEMLQDVCVADL--------TSPIKVNGFPCKANFSEM--DFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVI 624
            +T  ADPE +QD CVA +         +     GFPCK   + +  DFF   LA  + T+N FG  VTAAN +T PGLNTLGVS+ R+D APGG+NP H+HPRATE++ V+ G++  GF +TA    SK + +GE FV PRG++HFQ N G V A VI
Sbjct:   21 STCIADPEPVQDFCVAVVPRAGDAAAAACPAYPGFPCKPASTVVSDDFFFAGLAVASDTDNRFGFNVTAANAETFPGLNTLGVSIGRVDLAPGGVNPLHSHPRATELIHVVAGRVLAGFVSTAGEFYSKVLGEGETFVVPRGMIHFQYNVGGVAAQVI 178          

HSP 2 Score: 22.7126 bits (47), Expect = 7.104e-35
Identity = 10/23 (43.48%), Postives = 12/23 (52.17%), Query Frame = 3
Query:  633 NSQLQGTQNIALTLFASTPPVAD 701
            NSQ+ G      TLF S P + D
Sbjct:  182 NSQMPGVVAAGSTLFGSDPEIPD 204          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: OXO2_HORVU (Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.570e-34
Identity = 77/151 (50.99%), Postives = 96/151 (63.58%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSP-IKVNGFPCKANFSEMD--FFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGF---FTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVI 624
            A+DP+ LQD CVADL    + VNG PCK      D   FS KLAK   T+   GS VT  +V   PG NTLGVS+ R+D+APGG NPPH HPRATEI  V++G+L VG      + N L S+ ++ GE F+ PRGL+HFQ N G   AS++
Sbjct:   23 ASDPDPLQDFCVADLDGKAVSVNGHPCKPMSEAGDDFLFSSKLAKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHVHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMV 173          

HSP 2 Score: 25.0238 bits (53), Expect = 1.570e-34
Identity = 11/21 (52.38%), Postives = 13/21 (61.90%), Query Frame = 3
Query:  633 NSQLQGTQNIALTLFASTPPV 695
            NSQ  G   + LTLF S PP+
Sbjct:  177 NSQNPGIVFVPLTLFGSNPPI 197          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL33_ORYSJ (Germin-like protein 3-3 OS=Oryza sativa subsp. japonica GN=Os03g0693700 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.469e-34
Identity = 77/151 (50.99%), Postives = 96/151 (63.58%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMD--FFSDKLAKPAATN-NTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGF---FTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVI 624
            A DP+ LQD CVADL S + +NG+PCK   +  D   FS +LA     N N  GS VT  +V   PG+NTLGVS+ RID+APGG NPPH HPRATE+  VL G+L VG      T N   S+ ++ GE FV PRGL+HFQ N G   A+++
Sbjct:   26 ANDPDPLQDFCVADLDSEVTLNGYPCKPTPAAGDEFLFSSRLATGGDVNANPNGSNVTQLDVAGWPGVNTLGVSMNRIDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGSLDTGNRYYSRVVRGGETFVIPRGLMHFQFNVGKTEATMV 176          

HSP 2 Score: 25.0238 bits (53), Expect = 3.469e-34
Identity = 11/21 (52.38%), Postives = 13/21 (61.90%), Query Frame = 3
Query:  633 NSQLQGTQNIALTLFASTPPV 695
            NSQ  G   + LTLF S PP+
Sbjct:  180 NSQNPGIVFVPLTLFGSNPPI 200          
BLAST of FC931588 vs. ExPASy Swiss-Prot
Match: GL18_ARATH (Germin-like protein subfamily 1 member 8 OS=Arabidopsis thaliana GN=GLP9 PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 9.774e-34
Identity = 82/156 (52.56%), Postives = 98/156 (62.82%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSP--IKVNGFPCKAN---FSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGL 633
            A+DP  LQD CV   T    + VNG  CK     F++ DFF   L +P  TNN  GS VT  NV  + GLNTLG+SL RIDYAP G NPPHTHPRATEI+ V +G L VGF ++    N L +K++  G+ FVFP GL+HFQ N G  PA  IA L
Sbjct:   24 ASDPSPLQDFCVGVNTPADGVFVNGKFCKDPRIVFAD-DFFFSSLNRPGNTNNAVGSNVTTVNVNNLGGLNTLGISLVRIDYAPNGQNPPHTHPRATEILVVQQGTLLVGFISSNQDGNRLFAKTLNVGDVFVFPEGLIHFQFNLGGTPAVAIAAL 178          
The following BLAST results are available for this feature:
BLAST of FC931588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GL88_ORYSJ1.611e-3657.79Germin-like protein 8-8 OS=Oryza sativa subsp. jap... [more]
GL89_ORYSJ2.104e-3657.79Germin-like protein 8-9 OS=Oryza sativa subsp. jap... [more]
GL87_ORYSJ2.104e-3656.21Germin-like protein 8-7 OS=Oryza sativa subsp. jap... [more]
GL121_ORYSJ2.104e-3655.06Germin-like protein 12-1 OS=Oryza sativa subsp. ja... [more]
GL124_ORYSJ6.122e-3655.06Putative germin-like protein 12-4 OS=Oryza sativa ... [more]
GL811_ORYSJ7.995e-3655.56Germin-like protein 8-11 OS=Oryza sativa subsp. ja... [more]
GL38_ORYSJ7.104e-3549.37Germin-like protein 3-8 OS=Oryza sativa subsp. jap... [more]
OXO2_HORVU1.570e-3450.99Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1[more]
GL33_ORYSJ3.469e-3450.99Germin-like protein 3-3 OS=Oryza sativa subsp. jap... [more]
GL18_ARATH9.774e-3452.56Germin-like protein subfamily 1 member 8 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionC34106G09EF PostHarvP1 Citrus clementina cDNA clone C34106G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931588 ID=FC931588; Name=FC931588; organism=Citrus clementina; type=EST; length=723bp
GGTCAACAAATCAACACCAACTTTTCTCTCTCTCTCTCTTTCTCCATCTC
TATCTTTTCTTCTTTCTTTATCTTCGCCTGCAGCAATAACAAGATCATAA
TTGAACTTACTTTTGTAACCATGGCTGCTGCTGCTGCTGGTGCTTTGACA
CTTTTTGTTGTCACTGTTGCTGTGATCTTGAACACTGCTGCTGCTGATCC
CGAAATGCTTCAAGATGTTTGTGTGGCAGACCTCACTTCCCCTATTAAAG
TCAATGGGTTCCCCTGCAAAGCAAACTTTTCAGAGATGGACTTTTTCTCA
GACAAATTAGCAAAGCCAGCAGCCACAAACAACACGTTTGGTTCAACAGT
AACAGCAGCCAATGTCCAAACAATCCCAGGCCTAAATACTCTTGGTGTCT
CACTCGCACGCATTGACTATGCCCCCGGCGGCATAAACCCGCCGCACACG
CACCCCCGTGCCACCGAGATCGTCTTTGTCCTCGAGGGTCAACTCGACGT
AGGCTTCTTCACTACTGCCAACGTTTTGGTATCAAAATCCATCAAAAAGG
GTGAAAACTTCGTGTTTCCAAGAGGGTTGGTGCATTTCCAGAAGAACAAT
GGAAATGTCCCTGCTTCTGTTATTGCTGGCTTAATAGCCAGCTGCAGGGG
ACTCAGAACATTGCTCTTACATTGTTTGCATCTACGCCGCCAGTGGCGGA
TATGTATGACTAGACTTTCAGAT
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